CDD: A curated Entrez database of conserved domain alignments

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 383-387

  Marchler Bauer, Aron ^a   Anderson, John B ^a   DeWeese Scott, Carol ^a   Fedorova, Natalie D ^a   Geer, Lewis Y ^a   He, Siqian ^a   Hurwitz, David I ^a   Jackson, John D ^a   Jacobs, Aviva R ^a   Lanczycki, Christopher J ^a   Liebert, Cynthia A ^a   Liu, Chunlei ^a   Madej, Thomas ^a   Marchler, Gabriele H ^a   Mazumder, Raja ^a   Nikolskaya, Anastasia N ^a   Panchenko, Anna R ^a   Rao, Bachoti S ^a   Shoemaker, Benjamin A ^a   Simonyan, Vahan ^a   Song, James S ^a   Thiessen, Paul A ^a   Vasudevan, Sona ^a   Wang, Yanli ^a   Yamashita, Roxanne A ^a   Yin, Jodie J ^a   Bryant, Stephen H ^a   more..

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN DERIVATIVE;

ACCESS TO INFORMATION; ALGORITHM; AUTOMATION; CALCULATION; COMPUTER PROGRAM; CONSERVED DOMAIN DATABASE; GENETIC CONSERVATION; INTERNET; MEDLINE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STRUCTURE; REVIEW; SCORING SYSTEM; SEQUENCE ALIGNMENT; SEQUENCE DATABASE; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; CONSERVED SEQUENCE; DATABASES, PROTEIN; INFORMATION STORAGE AND RETRIEVAL; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT;

EID: 0037252683     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg087     Document Type: Review

References (11)

1. Bateman,A., Birney,E., Cerruti,L., Durbin,R., Etwiller,L., Eddy,S.R., Griffiths-Jones,S., Howe,K.L., Marshall,M. and Sonnhammer,E.L. (2002) The Pfam protein families database. Nucleic Acids Res., 30, 276-280.
2. Letunic,I., Goodstadt,L., Dickens,N.J., Doerks,T., Schultz,J., Mott,R., Ciccarelli,F., Copley,R.R., Ponting,C.P. and Bork,P. (2002) Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res., 30, 242-244.
3. Marchler-Bauer,A., Panchenko,A.R., Shoemaker,B.A., Thiessen,P.A., Geer,L.Y. and Bryant,S.H. (2002) CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res., 30, 281-283.
4. Marchler-Bauer,A., Panchenko,A.R., Ariel,N. and Bryant,S.H. (2002) Comparison of sequence and structure alignments for protein domains. Proteins, 48, 439-446.
5. Wheeler,D.L., Church,D.M., Lash,A.E., Leipe,D.D., Madden,T.L., Pontius,J.U., Schuler,G.D., Schriml,L.M., Tatusova,T.A., Wagner,L. and Rapp,B.A. (2002) Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res., 30, 13-16.
6. Geer,L.Y., Domrachev,M., Lipman,D.J. and Bryant,S.H. (2002) CDART: Protein Homology by Domain Architecture. Genome Res., 12, 1619-1623.
7. Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
8. Chen,J., Anderson,J.B., DeWeese-Scott,C., Fedorova,N.D., Geer,L.Y., He,S., Hurwitz,D.I., Jackson,J.D., Jacobs,A.R., Lanczycki,C.J., Liebert,C.A., Madej,T., Marchler-Bauer,A., Marchler,G.H., Mazumder,R., Nikolskaya,A.N., Rao,B.S., Panchenko,A.R., Shoemaker,B.A., Song,J.S., Thiessen,P.A., Vasudevan,S., Wang,Y., Yamashita,R.A., Yin,J.J. and Bryant,S.H. (2003) MMDB: Entrez's 3D-Structure Database. Nucleic Acids Res., 31, 474-477.
9. http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml.
10. Singleton,M.R., Hakannson,K., Timson,D.J. and Wigley,D.B. (1999) Structure of the adenylation domain of an NAD+-dependent DNA ligase. Struct. Fold. Des., 15, 35-42.
11. Aravind,L. and Koonin,E.V. (1999) Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. J. Mol. Biol., 287, 1023-1040.