-
3
-
-
0028965968
-
Molecular dynamics simulations of protein unfolding and limited refolding: Characterization of partially unfolded states of ubiquitin in 60% methanol and in water
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 501-520
-
-
Alonso, D.1
Daggett, V.2
-
25
-
-
0032539209
-
A combined molecular dynamics and φ-value analysis of structure-reactivity relationships in the transition state and pathway of barnase: The structural basis of Hammond and anti-Hammond effects
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 12540-12554
-
-
Daggett, V.1
Li, A.2
Fersht, A.R.3
-
27
-
-
0032561237
-
Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
-
(1998)
Science
, vol.282
, pp. 740-744
-
-
Duan, Y.1
Kollman, P.A.2
-
32
-
-
0027163998
-
Protein folding and stability: The pathway of folding of barnase
-
(1993)
FEBS Letters
, vol.325
, pp. 5-16
-
-
Fersht, A.R.1
-
33
-
-
0029653905
-
Mapping the structures of transition states and intermediates in folding: Delineation of pathways at high resolution
-
(1995)
Phil. Trans. Roy. Soc.
, vol.348
, pp. 11-15
-
-
Fersht, A.R.1
-
36
-
-
0028787226
-
Structural and dynamic characterization of the urea denatured state of the immunoglobulin binding domain of streptococcal protein G by multidimensional heteronuclear NMR spectroscopy
-
(1995)
Protein Sci.
, vol.4
, pp. 2605-2615
-
-
Frank, M.K.1
Clore, G.M.2
Gronenborn, A.M.3
-
40
-
-
0031585990
-
Characterization of long-range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 158-169
-
-
Gillespie, J.R.1
Shortle, D.2
-
41
-
-
0031585992
-
Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 170-184
-
-
Gillespie, J.R.1
Shortle, D.2
-
43
-
-
0008065648
-
-
NBS/NRC Steam Tables: Thermodynamic and Transport Properties and Computer Programs for Vapor and Liquid States of Water in SI Units, Hemisphere Publication Corporation, Washington, DC
-
(1984)
-
-
Haar, L.1
Gallagher, J.S.2
Kell, G.S.3
-
44
-
-
85031602001
-
-
NACCESS, Computer Program, Department of Biochemistry and Molecular BiologyUniversity College, London
-
(1993)
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
45
-
-
0028938022
-
Protein backbone dynamics revealed by quasi spectral density function analysis of amide N-15 nuclei
-
(1995)
Biochemistry
, vol.34
, pp. 3162-3171
-
-
Ishima, R.1
Nagayama, K.2
-
58
-
-
0031465967
-
'New view' of protein folding reconciled with the old through multiple unfolding simulations
-
(1997)
Science
, vol.278
, pp. 1928-1931
-
-
Lazaridis, T.1
Karplus, M.2
-
59
-
-
0008068823
-
-
ENCAD, Computer program, Energy Calculations and Dynamics, Molecular Applications Group, Palo Alto, CA and Yeda, Rehovot, Israel
-
(1990)
-
-
Levitt, M.1
-
63
-
-
0029963345
-
Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 using molecular dynamics simulations
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 412-429
-
-
Li, A.1
Daggett, V.2
-
65
-
-
33646719091
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
66
-
-
33845553743
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
70
-
-
0029041315
-
Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: Observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for the structural elements for unfolding/folding of barnase
-
(1995)
Biochemistry
, vol.34
, pp. 6805-6814
-
-
Matthews, J.M.1
Fersht, A.R.2
-
71
-
-
0033582680
-
Probing residual structure and backbone dynamics on the milli- to picosecond timescale in a urea-denatured fibronectin type III domain
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 579-592
-
-
Meekhof, A.E.1
Freund, S.M.V.2
-
78
-
-
0027980588
-
Thermodynamic study of the acid denaturation of barnase and its dependence on ionic strength: Evidence for residual electrostatic interactions in the acid/thermally denatured state
-
(1994)
Biochemistry
, vol.33
, pp. 8826-8832
-
-
Oliveberg, M.1
Vuilleumier, S.2
Fersht, A.R.3
-
79
-
-
0028983182
-
pK(a) values of carboxyl groups in the native and denatured states of barnase: The pK(a) values of the denatured state are on average 0.4 units lower than those of model compounds
-
(1995)
Biochemistry
, vol.34
, pp. 9424-9433
-
-
Oliveberg, M.1
Arcus, V.L.2
Fersht, A.R.3
-
82
-
-
0026784152
-
Mapping of the spectral densities of N-H bond motions in eglin c using heteronuclear relaxation experiments
-
(1992)
Biochemistry
, vol.31
, pp. 8571-8586
-
-
Peng, J.W.1
Wagner, G.2
-
83
-
-
0029623152
-
Frequency spectrum of NH bonds in eglin c from spectral density mapping at multiple fields
-
(1995)
Biochemistry
, vol.34
, pp. 16733-16752
-
-
Peng, J.W.1
Wagner, G.2
-
84
-
-
0030726550
-
NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 152-159
-
-
Penkett, C.J.1
Redfield, C.2
Dodd, I.3
Hubbard, J.4
McBay, D.L.5
Mossakowska, D.E.6
Smith, R.A.G.7
Dobson, C.M.8
Smith, L.J.9
-
85
-
-
0029562951
-
Molecular dynamics simulation of E. coli ribonuclease H1 in solution: Correlation with NMR and X-ray data and insights into biological function
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 771-792
-
-
Philippopoulos, M.1
Lim, C.2
-
89
-
-
0030759665
-
Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea
-
(1997)
Biochemistry
, vol.36
, pp. 8977-8991
-
-
Schwalbe, H.1
Fiebig, K.M.2
Buck, M.3
Jones, J.A.4
Grimshaw, S.B.5
Spencer, A.6
Glaser, S.J.7
Smith, L.J.8
Dobson, C.M.9
-
97
-
-
0028856228
-
The equilibrium folding pathway of staphylococcal nuclease: Identification of the most stable main-chain interactions by NMR and CD spectroscopy
-
(1995)
Biochemistry
, vol.34
, pp. 15895-15905
-
-
Wang, Y.1
Shortle, D.2
-
98
-
-
0029786948
-
A dynamic bundle of four adjacent hydrophobic segments in the denatured state of Staphylococcal nuclease
-
(1996)
Protein Sci.
, vol.5
, pp. 1898-1906
-
-
Wang, Y.1
Shortle, D.2
-
99
-
-
0032508370
-
Barstar has a highly dynamic hydrophobic core: Evidence from molecular dynamics simulations and nuclear magnetic resonance relaxation data
-
(1998)
Biochemistry
, vol.37
, pp. 11182-11192
-
-
Wong, K.B.1
Daggett, V.2
-
102
-
-
0008107479
-
-
NMR of Proteins and Nucleic Acids, John Wiley and Sons, Inc., New York
-
(1986)
-
-
Wuthrich, K.1
|