-
1
-
-
0037235952
-
Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing
-
V.S. Pande, I. Baker, J. Chapman, S.P. Elmer, S. Khaliq, and S.M. Larson Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing Biopolymers 68 2003 91 109
-
(2003)
Biopolymers
, vol.68
, pp. 91-109
-
-
Pande, V.S.1
Baker, I.2
Chapman, J.3
Elmer, S.P.4
Khaliq, S.5
Larson, S.M.6
-
2
-
-
0037154980
-
Protein folding and unfolding at atomic resolution
-
A.R. Fersht, and V. Daggett Protein folding and unfolding at atomic resolution Cell 108 2002 573 582
-
(2002)
Cell
, vol.108
, pp. 573-582
-
-
Fersht, A.R.1
Daggett, V.2
-
3
-
-
0036968512
-
Increasing temperature accelerates protein unfolding without changing the pathway of unfolding
-
R. Day, B.J. Bennion, S. Ham, and V. Daggett Increasing temperature accelerates protein unfolding without changing the pathway of unfolding J. Mol. Biol. 322 2002 189 203
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 189-203
-
-
Day, R.1
Bennion, B.J.2
Ham, S.3
Daggett, V.4
-
4
-
-
0037686252
-
The present view of the mechanism of protein folding
-
V. Daggett, and A. Fersht The present view of the mechanism of protein folding Nature Rev. Mol. Cell Biol. 4 2003 497 502
-
(2003)
Nature Rev. Mol. Cell Biol.
, vol.4
, pp. 497-502
-
-
Daggett, V.1
Fersht, A.2
-
5
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
U. Mayor, N.R. Guydosh, C.M. Johnson, J.G. Grossman, S. Sato, and G.S. Jas The complete folding pathway of a protein from nanoseconds to microseconds Nature 421 2003 863
-
(2003)
Nature
, vol.421
, pp. 863
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossman, J.G.4
Sato, S.5
Jas, G.S.6
-
6
-
-
0345255608
-
Unifying features in protein-folding mechanisms
-
S. Gianni, N.R. Guydosh, F. Khan, T.D. Caldas, U. Mayor, and G.W.N. White Unifying features in protein-folding mechanisms Proc. Natl Acad. Sci. USA 100 2003 13286 13291
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13286-13291
-
-
Gianni, S.1
Guydosh, N.R.2
Khan, F.3
Caldas, T.D.4
Mayor, U.5
White, G.W.N.6
-
7
-
-
2542599277
-
Phi-value analysis and the nature of protein-folding transition states
-
A.R. Fersht, and S. Sato Phi-value analysis and the nature of protein-folding transition states Proc. Natl Acad. Sci. USA 101 2004 7976 7981
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 7976-7981
-
-
Fersht, A.R.1
Sato, S.2
-
8
-
-
0034610360
-
Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation
-
U. Mayor, C.M. Johnson, V. Daggett, and A.R. Fersht Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation Proc. Natl Acad. Sci. USA 97 2000 13518 13522
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 13518-13522
-
-
Mayor, U.1
Johnson, C.M.2
Daggett, V.3
Fersht, A.R.4
-
9
-
-
0035818563
-
Using flexible loop mimetics to extend Phi-value analysis to secondary structure interactions
-
N. Ferguson, J.R. Pires, F. Toepert, C.M. Johnson, Y.P. Pan, and V. Daggett Using flexible loop mimetics to extend Phi-value analysis to secondary structure interactions Proc. Natl Acad. Sci. USA 98 2001 13008 13013
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13008-13013
-
-
Ferguson, N.1
Pires, J.R.2
Toepert, F.3
Johnson, C.M.4
Pan, Y.P.5
Daggett, V.6
-
10
-
-
0026579572
-
The folding of an enzyme.3. Structure of the transition-state for unfolding of barnase analyzed by a protein engineering procedure
-
L. Serrano, A. Matouschek, and A.R. Fersht The folding of an enzyme.3. Structure of the transition-state for unfolding of barnase analyzed by a protein engineering procedure J. Mol. Biol. 224 1992 805 818
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 805-818
-
-
Serrano, L.1
Matouschek, A.2
Fersht, A.R.3
-
11
-
-
0028868995
-
The structure of the transition-state for folding of chymotrypsin inhibitor-2 analyzed by protein engineering methods - Evidence for a nucleation-condensation mechanism for protein-folding
-
L.S. Itzhaki, D.E. Otzen, and A.R. Fersht The structure of the transition-state for folding of chymotrypsin inhibitor-2 analyzed by protein engineering methods - evidence for a nucleation-condensation mechanism for protein-folding J. Mol. Biol. 254 1995 260 288
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
12
-
-
0032555115
-
Synergy between simulation and experiment in describing the energy landscape of protein folding
-
A.G. Ladurner, L.S. Itzhaki, V. Daggett, and A.R. Fersht Synergy between simulation and experiment in describing the energy landscape of protein folding Proc. Natl Acad. Sci. USA 95 1998 8473 8478
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 8473-8478
-
-
Ladurner, A.G.1
Itzhaki, L.S.2
Daggett, V.3
Fersht, A.R.4
-
13
-
-
0029963345
-
Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations
-
A.J. Li, and V. Daggett Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations J. Mol. Biol. 257 1996 412 429
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 412-429
-
-
Li, A.J.1
Daggett, V.2
-
14
-
-
0030584659
-
Protein-protein interactions in the pyruvate dehydrogenase mulitenzyme complex:dihydrolipoaimde dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase
-
S.S. Mande, S. Sarfaty, M.D. Allen, R.N. Perham, and W.G.J. Hol Protein-protein interactions in the pyruvate dehydrogenase mulitenzyme complex:dihydrolipoaimde dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase Structure 4 1996 277 286
-
(1996)
Structure
, vol.4
, pp. 277-286
-
-
Mande, S.S.1
Sarfaty, S.2
Allen, M.D.3
Perham, R.N.4
Hol, W.G.J.5
-
15
-
-
2642644904
-
Multienzyme complexes
-
L.J. Reed Multienzyme complexes Accts. Chem. Res. 7 1974 40 46
-
(1974)
Accts. Chem. Res.
, vol.7
, pp. 40-46
-
-
Reed, L.J.1
-
16
-
-
7444244934
-
One-state downhill versus conventional protein folding
-
N. Ferguson, P.J. Schartau, T.D. Sharpe, S. Sato, and A.R. Fersht One-state downhill versus conventional protein folding J. Mol. Biol. 344 2004 295 301
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 295-301
-
-
Ferguson, N.1
Schartau, P.J.2
Sharpe, T.D.3
Sato, S.4
Fersht, A.R.5
-
17
-
-
0027404572
-
The high resolution structure of the peripheral subunit binding domain of the dihydrolipoamide acetyltransferase from the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus
-
Y.N. Kalia, S.M. Brocklehurst, D.S. Hipp, E. Apella, K. Sakaguchi, and N.J. Perham The high resolution structure of the peripheral subunit binding domain of the dihydrolipoamide acetyltransferase from the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus J. Mol. Biol. 230 1993 323 341
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 323-341
-
-
Kalia, Y.N.1
Brocklehurst, S.M.2
Hipp, D.S.3
Apella, E.4
Sakaguchi, K.5
Perham, N.J.6
-
18
-
-
0026578578
-
3-Dimensional solution structure of the e3-binding domain of the dihydrolipoamide succinyl transferase core from the 2- oxoglutarate dehydrogenase multienzyme complex of Escherichia coli
-
M.A. Robien, G.M. Clore, J.G. Omichinski, R.N. Perham, E. Appella, K. Sakaguchi, and A.M. Gronenborn 3-Dimensional solution structure of the e3-binding domain of the dihydrolipoamide succinyl transferase core from the 2- oxoglutarate dehydrogenase multienzyme complex of Escherichia coli Biochemistry 31 1992 3463 3471
-
(1992)
Biochemistry
, vol.31
, pp. 3463-3471
-
-
Robien, M.A.1
Clore, G.M.2
Omichinski, J.G.3
Perham, R.N.4
Appella, E.5
Sakaguchi, K.6
Gronenborn, A.M.7
-
19
-
-
0032548905
-
Cooperative folding of a protein mini domain: The peripheral subunit-binding domain of the pyruvate dehydrogenase multienzyme complex
-
S. Spector, B. Kuhlman, R. Fairman, E. Wong, J.A. Boice, and D.P. Raleigh Cooperative folding of a protein mini domain: the peripheral subunit-binding domain of the pyruvate dehydrogenase multienzyme complex J. Mol. Biol. 276 1998 479 489
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 479-489
-
-
Spector, S.1
Kuhlman, B.2
Fairman, R.3
Wong, E.4
Boice, J.A.5
Raleigh, D.P.6
-
20
-
-
0033527587
-
Submillisecond folding of the peripheral subunit-binding domain
-
S. Spector, and D.P. Raleigh Submillisecond folding of the peripheral subunit-binding domain J. Mol. Biol. 293 1999 763 768
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 763-768
-
-
Spector, S.1
Raleigh, D.P.2
-
21
-
-
0033616732
-
Nativelike structure and stability in a truncation mutant of a protein minidomain: The peripheral subunit-binding domain
-
S. Spector, P. Young, and D.P. Raleigh Nativelike structure and stability in a truncation mutant of a protein minidomain: the peripheral subunit-binding domain Biochemistry 38 1999 4128 4136
-
(1999)
Biochemistry
, vol.38
, pp. 4128-4136
-
-
Spector, S.1
Young, P.2
Raleigh, D.P.3
-
22
-
-
0026511656
-
The folding of an enzyme. 1. Theory of protein engineering analysis of stability and pathway of protein folding
-
A.R. Fersht, A. Matouschek, and L. Serrano The folding of an enzyme. 1. Theory of protein engineering analysis of stability and pathway of protein folding J. Mol. Biol. 224 1992 771 782
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
23
-
-
0028856785
-
Optimization of rates of protein-folding - The nucleation-condensation mechanism and its implications
-
A.R. Fersht Optimization of rates of protein-folding - the nucleation-condensation mechanism and its implications Proc. Natl Acad. Sci. USA 92 1995 10869 10873
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 10869-10873
-
-
Fersht, A.R.1
-
24
-
-
0028174643
-
Quantitative-determination of helical propensities from trifluoroethanol titration curves
-
A. Jasanoff, and A.R. Fersht Quantitative-determination of helical propensities from trifluoroethanol titration curves Biochemistry 33 1994 2129 2135
-
(1994)
Biochemistry
, vol.33
, pp. 2129-2135
-
-
Jasanoff, A.1
Fersht, A.R.2
-
25
-
-
0031127043
-
Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: Comparison with Zimm-Bragg and Lifson-Roig formalisms
-
V. Munoz, and L. Serrano Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: Comparison with Zimm-Bragg and Lifson-Roig formalisms Biopolymers 41 1997 495 509
-
(1997)
Biopolymers
, vol.41
, pp. 495-509
-
-
Munoz, V.1
Serrano, L.2
-
26
-
-
0032905913
-
Conformational analysis of peptide fragments derived from the peripheral subunit binding domain from the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus: Evidence for nonrandom structure in the unfolded state
-
S. Spector, M. Rosconi, and D.P. Raleigh Conformational analysis of peptide fragments derived from the peripheral subunit binding domain from the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus: evidence for nonrandom structure in the unfolded state Biopolymers 49 1999 29 40
-
(1999)
Biopolymers
, vol.49
, pp. 29-40
-
-
Spector, S.1
Rosconi, M.2
Raleigh, D.P.3
-
27
-
-
0027980588
-
Thermodynamic study of the acid denaturation of barnase and its dependence on ionic strength - Evidence for residual electrostatic interactions in the acid/thermally denatured state
-
M. Oliveberg, S. Vuilleumier, and A.R. Fersht Thermodynamic study of the acid denaturation of barnase and its dependence on ionic strength - evidence for residual electrostatic interactions in the acid/thermally denatured state Biochemistry 33 1994 8826 8832
-
(1994)
Biochemistry
, vol.33
, pp. 8826-8832
-
-
Oliveberg, M.1
Vuilleumier, S.2
Fersht, A.R.3
-
29
-
-
0347722841
-
Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients
-
M. Sattler, J. Schleucher, and C. Griesinger Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients Prog. Nucl. Mag. Res. Spec. 34 1999 93 158
-
(1999)
Prog. Nucl. Mag. Res. Spec.
, vol.34
, pp. 93-158
-
-
Sattler, M.1
Schleucher, J.2
Griesinger, C.3
-
31
-
-
0026597879
-
The chemical-shift index - A fast and simple method for the assignment of protein secondary structure through NMR-spectroscopy
-
D.S. Wishart, B.D. Sykes, and F.M. Richards The chemical-shift index - a fast and simple method for the assignment of protein secondary structure through NMR-spectroscopy Biochemistry 31 1992 1647 1651
-
(1992)
Biochemistry
, vol.31
, pp. 1647-1651
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
32
-
-
0023697408
-
Unfolding free-energy changes determined by the linear extrapolation method.1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants
-
M.M. Santoro, and D.W. Bolen Unfolding free-energy changes determined by the linear extrapolation method.1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants Biochemistry 27 1988 8063 8068
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
-
33
-
-
0026345750
-
Folding of Chymotrypsin Inhibitor-2. 1. Evidence for a 2-state transition
-
S.E. Jackson, and A.R. Fersht Folding of Chymotrypsin Inhibitor-2. 1. Evidence for a 2-state transition Biochemistry 30 1991 10428 10435
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
34
-
-
0029981188
-
Structure of the transition state for folding of a protein derived from experiment and simulation
-
V. Daggett, A.J. Li, L.S. Itzhaki, D.E. Otzen, and A.R. Fersht Structure of the transition state for folding of a protein derived from experiment and simulation J. Mol. Biol. 257 1996 430 440
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 430-440
-
-
Daggett, V.1
Li, A.J.2
Itzhaki, L.S.3
Otzen, D.E.4
Fersht, A.R.5
-
35
-
-
0028958601
-
Characterizing transition-states in protein-folding - An essential step in the puzzle
-
A.R. Fersht Characterizing transition-states in protein-folding - an essential step in the puzzle Curr. Opin. Struct. Biol. 5 1995 79 84
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 79-84
-
-
Fersht, A.R.1
-
36
-
-
2442683149
-
The folding transition state of the cold shock protein is strongly polarized
-
M.M. Garcia-Mira, D. Boehringer, and F.X. Schmid The folding transition state of the cold shock protein is strongly polarized J. Mol. Biol. 339 2004 555 569
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 555-569
-
-
Garcia-Mira, M.M.1
Boehringer, D.2
Schmid, F.X.3
-
37
-
-
0032812796
-
Mapping the interactions present in the transition state for unfolding/folding of FKBP12
-
K.F. Fulton, E.R.G. Main, V. Daggett, and S.E. Jackson Mapping the interactions present in the transition state for unfolding/folding of FKBP12 J. Mol. Biol. 291 1999 445 461
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 445-461
-
-
Fulton, K.F.1
Main, E.R.G.2
Daggett, V.3
Jackson, S.E.4
-
38
-
-
0034984382
-
Mapping the folding pathway of an immunoglobulin domain: Structural detail from phi value analysis and movement of the transition state
-
S.B. Fowler, and J. Clarke Mapping the folding pathway of an immunoglobulin domain: structural detail from phi value analysis and movement of the transition state Structure 9 2001 355 366
-
(2001)
Structure
, vol.9
, pp. 355-366
-
-
Fowler, S.B.1
Clarke, J.2
-
39
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of lm7 and lm9: Similarities and differences in the folding of homologous proteins
-
C.T. Friel, A.P. Capaldi, and S.E. Radford Structural analysis of the rate-limiting transition states in the folding of lm7 and lm9: similarities and differences in the folding of homologous proteins J. Mol. Biol. 326 2003 293 305
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi, A.P.2
Radford, S.E.3
-
41
-
-
0021504608
-
The use of double mutants to detect structural-changes in the active-site of the tyrosyl-transfer RNA-synthetase (Bacillus stearothermophilus)
-
P.J. Carter, G. Winter, A.J. Wilkinson, and A.R. Fersht The use of double mutants to detect structural-changes in the active-site of the tyrosyl-transfer RNA-synthetase (Bacillus stearothermophilus) Cell 38 1984 835 840
-
(1984)
Cell
, vol.38
, pp. 835-840
-
-
Carter, P.J.1
Winter, G.2
Wilkinson, A.J.3
Fersht, A.R.4
-
42
-
-
0025126043
-
Strategy for analyzing the cooperativity of intramolecular interactions in peptides and proteins
-
A. Horovitz, and A.R. Fersht Strategy for analyzing the cooperativity of intramolecular interactions in peptides and proteins J. Mol. Biol. 214 1990 613 617
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 613-617
-
-
Horovitz, A.1
Fersht, A.R.2
-
43
-
-
0026587310
-
Cooperative interactions during protein folding
-
A. Horovitz, and A.R. Fersht Cooperative interactions during protein folding J. Mol. Biol. 224 1992 733 740
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 733-740
-
-
Horovitz, A.1
Fersht, A.R.2
-
44
-
-
0021828928
-
Hydrogen-bonding and biological specificity analyzed by protein engineering
-
A.R. Fersht, J.P. Shi, J. Knilljones, D.M. Lowe, A.J. Wilkinson, and D.M. Blow Hydrogen-bonding and biological specificity analyzed by protein engineering Nature 314 1985 235 238
-
(1985)
Nature
, vol.314
, pp. 235-238
-
-
Fersht, A.R.1
Shi, J.P.2
Knilljones, J.3
Lowe, D.M.4
Wilkinson, A.J.5
Blow, D.M.6
-
45
-
-
0030059689
-
Forces contributing to the conformational stability of proteins
-
C.N. Pace, B.A. Shirley, M. McNutt, and K. Gajiwala Forces contributing to the conformational stability of proteins FASEB J. 10 1996 75 83
-
(1996)
FASEB J.
, vol.10
, pp. 75-83
-
-
Pace, C.N.1
Shirley, B.A.2
McNutt, M.3
Gajiwala, K.4
-
46
-
-
3042848873
-
Context-dependent contributions of backbone hydrogen bonding to beta-sheet folding energetics
-
S. Deechongkit, H. Nguyen, E.T. Powers, P.E. Dawson, M. Gruebele, and J.W. Kelly Context-dependent contributions of backbone hydrogen bonding to beta-sheet folding energetics Nature 430 2004 101 105
-
(2004)
Nature
, vol.430
, pp. 101-105
-
-
Deechongkit, S.1
Nguyen, H.2
Powers, E.T.3
Dawson, P.E.4
Gruebele, M.5
Kelly, J.W.6
-
47
-
-
0037032225
-
Smaller and faster: The 20-residue Trp-cage protein folds in 4 μs
-
L.L. Qiu, S.A. Pabit, A.E. Roitberg, and S.J. Hagen Smaller and faster: the 20-residue Trp-cage protein folds in 4 μs J. Am. Chem. Soc. 124 2002 12952 12953
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 12952-12953
-
-
Qiu, L.L.1
Pabit, S.A.2
Roitberg, A.E.3
Hagen, S.J.4
-
48
-
-
0038054301
-
Experimental tests of villin subdomain folding simulations
-
J. Kubelka, W.A. Eaton, and J. Hofrichter Experimental tests of villin subdomain folding simulations J. Mol. Biol. 329 2003 625 630
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 625-630
-
-
Kubelka, J.1
Eaton, W.A.2
Hofrichter, J.3
-
49
-
-
0035818471
-
Ultrafast folding of WW domains without structured aromatic clusters in the denatured state
-
N. Ferguson, C.M. Johnson, M. Macias, H. Oschkinat, and A.R. Fersht Ultrafast folding of WW domains without structured aromatic clusters in the denatured state Proc. Natl Acad. Sci. USA 98 2001 13002 13007
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13002-13007
-
-
Ferguson, N.1
Johnson, C.M.2
MacIas, M.3
Oschkinat, H.4
Fersht, A.R.5
-
51
-
-
0035005366
-
Preorganized secondary structure as an important determinant of fast protein folding
-
J.K. Myers, and T.G. Oas Preorganized secondary structure as an important determinant of fast protein folding Nature Struct. Biol. 8 2001 552 558
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 552-558
-
-
Myers, J.K.1
Oas, T.G.2
-
52
-
-
0346734133
-
Ultrafast folding of alpha(3): A de novo designed three-helix bundle protein
-
Y. Zhu, D.O.V. Alonso, K. Maki, C.Y. Huang, S.J. Lahr, and V. Daggett Ultrafast folding of alpha(3): a de novo designed three-helix bundle protein Proc. Natl Acad. Sci. USA 100 2003 15486 15491
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15486-15491
-
-
Zhu, Y.1
Alonso, D.O.V.2
Maki, K.3
Huang, C.Y.4
Lahr, S.J.5
Daggett, V.6
-
53
-
-
0037117477
-
Unspecific hydrophobic stabilization of folding transition states
-
A.R. Viguera, C. Vega, and L. Serrano Unspecific hydrophobic stabilization of folding transition states Proc. Natl Acad. Sci. USA 99 2002 5349 5354
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 5349-5354
-
-
Viguera, A.R.1
Vega, C.2
Serrano, L.3
-
54
-
-
0037221599
-
Is there a unifying mechanism for protein folding?
-
V. Daggett, and A.R. Fersht Is there a unifying mechanism for protein folding? Trends Biochem. Sci. 28 2003 18 25
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 18-25
-
-
Daggett, V.1
Fersht, A.R.2
-
55
-
-
0031853167
-
Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain
-
V.P. Grantcharova, D.S. Riddle, J.V. Santiago, and D. Baker Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain Nature Struct. Biol. 5 1998 714 720
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 714-720
-
-
Grantcharova, V.P.1
Riddle, D.S.2
Santiago, J.V.3
Baker, D.4
-
56
-
-
0031815749
-
How do small single-domain proteins fold?
-
S.E. Jackson How do small single-domain proteins fold? Fold. Des. 3 1998 R81 R91
-
(1998)
Fold. Des.
, vol.3
-
-
Jackson, S.E.1
-
57
-
-
0037073934
-
Experimental identification of downhill protein folding
-
M.M. Garcia-Mira, M. Sadqi, N. Fischer, J.M. Sanchez-Ruiz, and V. Munoz Experimental identification of downhill protein folding Science 298 2002 2191 2195
-
(2002)
Science
, vol.298
, pp. 2191-2195
-
-
Garcia-Mira, M.M.1
Sadqi, M.2
Fischer, N.3
Sanchez-Ruiz, J.M.4
Munoz, V.5
-
58
-
-
0034515845
-
Ansig for windows: An interactive computer program for semiautomatic assignment of protein NMR spectra
-
M. Helgstrand, P. Kraulis, P. Allard, and T. Hard Ansig for windows: an interactive computer program for semiautomatic assignment of protein NMR spectra J. Biomol. NMR 18 2000 329 336
-
(2000)
J. Biomol. NMR
, vol.18
, pp. 329-336
-
-
Helgstrand, M.1
Kraulis, P.2
Allard, P.3
Hard, T.4
-
59
-
-
0026410969
-
Relationship between nuclear-magnetic-resonance chemical-shift and protein secondary structure
-
D.S. Wishart, B.D. Sykes, and F.M. Richards Relationship between nuclear-magnetic-resonance chemical-shift and protein secondary structure J. Mol. Biol. 222 1991 311 333
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 311-333
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
60
-
-
0043194015
-
Rapid amyloid fiber formation from the fast-folding WW domain FBP28
-
N. Ferguson, J. Berriman, M. Petrovich, T.D. Sharpe, J.T. Finch, and A.R. Fersht Rapid amyloid fiber formation from the fast-folding WW domain FBP28 Proc. Natl Acad. Sci. USA 100 2003 9814 9819
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9814-9819
-
-
Ferguson, N.1
Berriman, J.2
Petrovich, M.3
Sharpe, T.D.4
Finch, J.T.5
Fersht, A.R.6
-
61
-
-
0003540405
-
-
Molecular Applications Group, Palo alto, CA and Yeda, Rehovot, Israel.
-
Levitt, M. (1990) ENCAD, Computer program, energy calculations and dynamics. Molecular Applications Group, Palo alto, CA and Yeda, Rehovot, Israel.
-
(1990)
ENCAD, Computer Program, Energy Calculations and Dynamics
-
-
Levitt, M.1
-
62
-
-
0029633167
-
Potential-energy function and parameters for simulations of the molecular-dynamics of proteins and nucleic-acids in solution
-
M. Levitt, M. Hirshberg, R. Sharon, and V. Daggett Potential-energy function and parameters for simulations of the molecular-dynamics of proteins and nucleic-acids in solution Comput. Phys. Commun. 91 1995 215 231
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 215-231
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Daggett, V.4
-
63
-
-
0000125216
-
Calibration and testing of a water model for simulation of the molecular dynamics of proteins and nucleic acids in solution
-
M. Levitt, M. Hirshberg, R. Sharon, K.E. Laidig, and V. Daggett Calibration and testing of a water model for simulation of the molecular dynamics of proteins and nucleic acids in solution J. Phys. Chem. B 101 1997 5051 5061
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 5051-5061
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Laidig, K.E.4
Daggett, V.5
-
65
-
-
84887006810
-
A nonlinear mapping for data structure analysis
-
J. Sammon A nonlinear mapping for data structure analysis IEEE Trans Comput. 18 1969 401 409
-
(1969)
IEEE Trans Comput.
, vol.18
, pp. 401-409
-
-
Sammon, J.1
-
66
-
-
0028143603
-
Characterization of the transition-state of protein unfolding by use of molecular-dynamics - Chymotrypsin inhibitor-2
-
A.J. Li, and V. Daggett Characterization of the transition-state of protein unfolding by use of molecular-dynamics - chymotrypsin inhibitor-2 Proc. Natl Acad. Sci. USA 91 1994 10430 10434
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 10430-10434
-
-
Li, A.J.1
Daggett, V.2
-
68
-
-
0020997912
-
Dictionary of protein secondary structure - Pattern-recognition of hydrogen-bonded and geometrical features
-
W. Kabsch, and C. Sander Dictionary of protein secondary structure - pattern-recognition of hydrogen-bonded and geometrical features Biopolymers 22 1983 2577 2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
69
-
-
0024358426
-
Mapping the transition-state and pathway of protein folding by protein engineering
-
A. Matouschek, J.T. Kellis, L. Serrano, and A.R. Fersht Mapping the transition-state and pathway of protein folding by protein engineering Nature 340 1989 122 126
-
(1989)
Nature
, vol.340
, pp. 122-126
-
-
Matouschek, A.1
Kellis, J.T.2
Serrano, L.3
Fersht, A.R.4
-
70
-
-
0345304461
-
Origin of unusual Phi-values in protein folding: Evidence against specific nucleation sites
-
I.E. Sanchez, and T. Kiefhaber Origin of unusual Phi-values in protein folding: evidence against specific nucleation sites J. Mol. Biol. 334 2003 1077 1085
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 1077-1085
-
-
Sanchez, I.E.1
Kiefhaber, T.2
|