Homology-dependent methylation in primate repetitive DNA

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 15, 2005, Pages 5471-5476

  Meunier, Julien ^a   Khelifi, Adel ^a   Navratil, Vincent ^a   Duret, Laurent ^a  

^a UNIVERSITÉ LYON 1   (France)

Author keywords

CpG; RNA interference; Substitution rate; Transposable element

Indexed keywords

REPETITIVE DNA;

ARTICLE; CPG ISLAND; GENE SEQUENCE; GENE SILENCING; GENETIC TRANSCRIPTION; GERM LINE; HUMAN; MAMMALIAN GENETICS; METHYLATION; NONHUMAN; PRIMATE; PRIORITY JOURNAL; PSEUDOGENE; RNA INTERFERENCE; SEQUENCE HOMOLOGY; TRANSPOSON;

ANIMALS; CPG ISLANDS; DNA; DNA METHYLATION; EVOLUTION, MOLECULAR; HUMANS; MODELS, GENETIC; PAN TROGLODYTES; PAPIO; POINT MUTATION; PRIMATES; PSEUDOGENES; REPETITIVE SEQUENCES, NUCLEIC ACID; SELECTION (GENETICS); SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SHORT INTERSPERSED NUCLEOTIDE ELEMENTS;

ILEX COOKII; MAMMALIA; PRIMATES;

EID: 17244367011     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408986102     Document Type: Article

References (38)

1. Yoder, J. A., Walsh, C. P., Bestor, T. H., Woodcock, D. M., Lawler, C. B., Linsenmeyer, M. E., Doherty, J. P. & Warren, W. D. (1997) Trends Genet. 13, 335-340.
2. Selker, E. U., Cambareri, E. B., Jensen, B. C. & Haack, K. R. (1987) Cell 51, 741-752.
3. Selker, E. U. (2002) Adv. Genet. 46, 439-450.
4. Selker, E. U., Tountas, N. A., Cross, S. H., Margolin, B. S., Murphy, J. G., Bird, A. P. & Freitag, M. (2003) Nature 422, 893-897.
5. Selker, E. U. (1990) Annu. Rev. Genet. 24, 579-613.
6. Mautino, M. R. & Rosa, A. L. (1998) J. Theor. Biol. 192, 61-71.
7. Miura, A., Yonebayashi, S., Watanabe, K., Toyama, T., Shimada, H. & Kakutani, T. (2001) Nature 411, 212-214.
8. Rabinowicz, P. D., Palmer, L. E., May, B. P., Hemann, M. T., Lowe, S. W., McCombie, W. R. & Martienssen, R. A. (2003) Genome Res. 13, 2658-2664.
9. Kricker, M. C., Drake, J. W. & Radman, M. (1992) Proc. Natl. Acad. Sci. USA 89, 1075-1079.
10. Hellmann-Blumberg, U., Hintz, M. F., Gatewood, J. M. & Schmid, C. W. (1993) Mol. Cell. Biol. 13, 4523-4530.
11. Chesnokov, I. N. & Schmid, C. W. (1995) J. Biol. Chem. 270, 18539-18542.
12. Yates, P. A., Burman, R. W., Mummaneni, P., Krussel, S. & Turker, M. S. (1999) J. Biol. Chem. 274, 36357-36361.
13. Liang, G., Chan, M. F., Tomigahara, Y., Tsai, Y. C., Gonzales, F. A., Li, E., Laird, P. W., Jones, P. A., Gruenbaum, Y., Stein, R., et al. (2002) Mol. Cell. Biol. 22, 480-491.
14. Lees-Murdock, D. J., De Felici, M. & Walsh, C. P. (2003) Genomics 82, 230-237.
15. Jeltsch, A. (2002) Chembiochem 3, 274-293.
16. Holn, M., Kurtz, S. & Ohlebusch, E. (2002) Bioinformatics 18, Suppl. 1, S312-S320.
17. Meunier, J. & Duret, L. (2004) Mol. Biol. Evol. 21, 984-990.
18. Khelifi, A., Duret, L. & Mouchiroud, D. (2005) Nucleic Acids Res. 33, D59-D66.
19. Duret, L., Mouchiroud, D. & Gouy, M. (1994) Nucleic Acids Res. 22, 2360-2365.
20. Ellegren, H., Smith, N. G. C. & Webster, M. T. (2003) Curr. Opin. Genet. Dev. 13, 562-568.
21. Arndt, P. F., Petrov, D. A. & Hwa, T. (2003) Mol. Biol. Evol. 20, 1887-1896.
22. Smit, A. F. A. (1999) Curr. Opin. Genet. Dev. 9, 657-663.
23. Waterson, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., et al. (2002) Nature 420, 520-562.
24. Elnitski, L., Hardison, R. C., Li, J., Yang, S., Kolbe, D., Eswara, P., O'Connor, M. J., Schwartz, S., Miller, W. & Chiaromonte, F. (2003) Genome Res. 13, 64-72.
25. Selker, E. U. (1999) Cell 97, 157-160.
26. Bender, J. (1998) Trends Biochem. Sci. 23, 252-256.
27. Lippman, Z. J. & Martienssen, R. (2004) Nature 431, 364-370.
28. Matzke, M., Aufsatz, W., Kanno, T., Daxinger, L., Papp, I., Mette, M. F. & Matzke, A. J. M. (2004) Biochim. Biophys. Acta 1677, 129-141.
29. Kawasaki, H., Taira, K. & Morris, K. V. (2005) Cell Cycle 4, e22-e28.
30. van de Lagemaat, L. N., Landry, J. R., Mager, D. L. & Medstrand, P. (2003) Trends Genet. 19, 530-536.
31. Semon, M. & Duret, L. (2004) Trends Genet. 20, 229-232.
32. Kawasaki, H. & Taira, K. (2004) Nature 431, 211-217.
33. Morris, K. V., Chan, S. W. L., Jacobsen, S. E. & Looney, D. J. (2004) Science 305, 1289-1292.
34. Tamaru, H. & Selker, E. U. (2001) Nature 414, 277-283.
35. Cao, X., Aufsatz, W., Zilberman, D., Mette, M. F., Huang, M. S., Matzke, M. & Jacobsen, S. E. (2003) Curr. Biol. 13, 2212-2217.
36. Lippman, Z. J., Grendel, A.-V, Black, M., Vaughn, M., Dedhia, N., McCombie, W. R., Lavine, K., Mittal, V., May, B., Kasschau, K. D., et al. (2004) Nature 430, 471-476.
37. Tufarelli, C., Stanley, J. A. S., Garrick, D., Sharpe, J. A., Ayyub, H., Wood, W. G. & Higgs, D. R. (2003) Nat. Genet. 34, 157-165.
38. Jurka, J. (2000) Trends Genet. 16, 418-420.