-
1
-
-
0242659321
-
DNA sequence evolution with neighbor-dependent mutation
-
6th Annual International Conference on Computational Biology. Washington, D. C.
-
Arndt, P. F., C. B. Burge, and T. Hwa. 2002. DNA sequence evolution with neighbor-dependent mutation. 6th Annual International Conference on Computational Biology. Washington, D. C. J. Comp. Biol. 10:313-322.
-
(2002)
J. Comp. Biol.
, vol.10
, pp. 313-322
-
-
Arndt, P.F.1
Burge, C.B.2
Hwa, T.3
-
2
-
-
0022914759
-
Compositional constraints and genome evolution
-
Bernardi, G. 1986. Compositional constraints and genome evolution. J. Mol. Evol. 24:1-11.
-
(1986)
J. Mol. Evol.
, vol.24
, pp. 1-11
-
-
Bernardi, G.1
-
3
-
-
0027395841
-
The vertebrate genome: Isochores and evolution
-
-. 1993. The vertebrate genome: isochores and evolution. Mol. Biol. Evol. 10:186-204.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 186-204
-
-
-
4
-
-
0025081043
-
Compositional transitions in the nuclear genomes of cold-blooded vertebrates
-
-. 1990. Compositional transitions in the nuclear genomes of cold-blooded vertebrates. J. Mol. Evol. 31:282-293.
-
(1990)
J. Mol. Evol.
, vol.31
, pp. 282-293
-
-
-
5
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
-. 2000. Isochores and the evolutionary genomics of vertebrates. Gene 241:3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
-
6
-
-
0031029793
-
The major compositional transitions in the vertebrate genome
-
Bernardi, G., S. Hughes, and D. Mouchiroud. 1997. The major compositional transitions in the vertebrate genome. J. Mol. Evol. 44:S44-51.
-
(1997)
J. Mol. Evol.
, vol.44
-
-
Bernardi, G.1
Hughes, S.2
Mouchiroud, D.3
-
7
-
-
0028340205
-
Evidence that most human Alu sequences were inserted in a process that ceased about 30 million years ago
-
Britten, R. J. 1994. Evidence that most human Alu sequences were inserted in a process that ceased about 30 million years ago. Proc. Natl. Acad. Sci. USA 91:6148-6150.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6148-6150
-
-
Britten, R.J.1
-
8
-
-
0342596934
-
Sources and evolution of human Alu repeated sequences
-
Britten, R. J., W. F. Baron, D. B. Stout, and E. H. Davidson. 1988. Sources and evolution of human Alu repeated sequences. Proc. Natl. Acad. Sci. USA 85:4770-4774.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 4770-4774
-
-
Britten, R.J.1
Baron, W.F.2
Stout, D.B.3
Davidson, E.H.4
-
9
-
-
0018185292
-
Molecular basis of base substitution hotspots in Escherichia coli
-
Coulondre, C., J. H. Miller, P. J. Farabaugh, and W. Gilbert. 1978. Molecular basis of base substitution hotspots in Escherichia coli. Nature 274:775-780.
-
(1978)
Nature
, vol.274
, pp. 775-780
-
-
Coulondre, C.1
Miller, J.H.2
Farabaugh, P.J.3
Gilbert, W.4
-
10
-
-
0036959203
-
Vanishing GC-rich isochores in mammalian genomes
-
Duret, L., M. Semon, G. Piganeau, D. Mouchiroud, and N. Galtier. 2002. Vanishing GC-rich isochores in mammalian genomes. Genetics 162:1837-1847.
-
(2002)
Genetics
, vol.162
, pp. 1837-1847
-
-
Duret, L.1
Semon, M.2
Piganeau, G.3
Mouchiroud, D.4
Galtier, N.5
-
11
-
-
0033486370
-
Molecular evidence for the early divergence of placental mammals
-
discussion 1059
-
Easteal, S. 1999. Molecular evidence for the early divergence of placental mammals. Bioessays 21:1052-1058; discussion 1059.
-
(1999)
Bioessays
, vol.21
, pp. 1052-1058
-
-
Easteal, S.1
-
12
-
-
0027183991
-
Recombination and mammalian genome evolution
-
Eyre-Walker, A. 1993. Recombination and mammalian genome evolution. Proc. R. Soc. Lond. B. Biol. Sci. 252:237-243.
-
(1993)
Proc. R. Soc. Lond. B. Biol. Sci.
, vol.252
, pp. 237-243
-
-
Eyre-Walker, A.1
-
13
-
-
0033018384
-
Evidence of selection on silent site base composition in mammals: Potential implications for the evolution of isochores and junk DNA
-
-. 1999. Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA. Genetics 152:675-683.
-
(1999)
Genetics
, vol.152
, pp. 675-683
-
-
-
15
-
-
0015895045
-
An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation
-
Filipski, J., J. P. Thiery, and G. Bernardi. 1973. An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation. J. Mol. Biol. 80:177-197.
-
(1973)
J. Mol. Biol.
, vol.80
, pp. 177-197
-
-
Filipski, J.1
Thiery, J.P.2
Bernardi, G.3
-
16
-
-
0031762570
-
Isochore evolution in mammals: A human-like ancestral structure
-
Galtier, N., and D. Mouchiroud. 1998. Isochore evolution in mammals: a human-like ancestral structure. Genetics 150:1577-1584.
-
(1998)
Genetics
, vol.150
, pp. 1577-1584
-
-
Galtier, N.1
Mouchiroud, D.2
-
17
-
-
0034707206
-
Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence
-
Gu, Z., H. Wang, A. Nekrutenko, and W. H. Li. 2000. Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence. Gene 259:81-88.
-
(2000)
Gene
, vol.259
, pp. 81-88
-
-
Gu, Z.1
Wang, H.2
Nekrutenko, A.3
Li, W.H.4
-
18
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
19
-
-
0029669270
-
Continental breakup and the ordinal diversification of birds and mammals
-
Hedges, S. B., P. H. Parker, C. G. Sibley, and S. Kumar. 1996. Continental breakup and the ordinal diversification of birds and mammals. Nature 381:226-229.
-
(1996)
Nature
, vol.381
, pp. 226-229
-
-
Hedges, S.B.1
Parker, P.H.2
Sibley, C.G.3
Kumar, S.4
-
20
-
-
0026890665
-
Chromosome bands, their chromatin flavors, and their functional features
-
Holmquist, G. P. 1992. Chromosome bands, their chromatin flavors, and their functional features. Am. J. Hum. Genet. 51:17-37.
-
(1992)
Am. J. Hum. Genet.
, vol.51
, pp. 17-37
-
-
Holmquist, G.P.1
-
21
-
-
0032736988
-
Warm-blooded isochore structure in Nile crocodile and turtle
-
Hughes, S., D. Zelus, and D. Mouchiroud. 1999. Warm-blooded isochore structure in Nile crocodile and turtle. Mol. Biol. Evol. 16:1521-1527.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1521-1527
-
-
Hughes, S.1
Zelus, D.2
Mouchiroud, D.3
-
22
-
-
0034284437
-
Repbase update: A database and an electronic joumal of repetitive elements
-
Jurka, J. 2000. Repbase update: a database and an electronic joumal of repetitive elements. Trends Genet. 16:418-420.
-
(2000)
Trends Genet.
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
23
-
-
0025736539
-
Reconstruction and analysis of human Alu genes
-
Jurka, J., and A. Milosavljevic. 1991. Reconstruction and analysis of human Alu genes. J. Mol. Evol. 32:105-121.
-
(1991)
J. Mol. Evol.
, vol.32
, pp. 105-121
-
-
Jurka, J.1
Milosavljevic, A.2
-
24
-
-
0342298816
-
A fundamental division in the Alu family of repeated sequences
-
Jurka, J., and T. Smith. 1988. A fundamental division in the Alu family of repeated sequences. Proc. Natl. Acad. Sci. USA 85:4775-4778.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 4775-4778
-
-
Jurka, J.1
Smith, T.2
-
25
-
-
0030045979
-
The age of Alu subfamilies
-
Kapitonov, V., and J. Jurka. 1996. The age of Alu subfamilies. J. Mol. Evol. 42:59-65.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 59-65
-
-
Kapitonov, V.1
Jurka, J.2
-
26
-
-
0001464973
-
Estimation of evolutionary distances between homologous nucleotide sequences
-
Kimura, M. 1981. Estimation of evolutionary distances between homologous nucleotide sequences. Proc Natl. Acad. Sci. USA 78:454-458.
-
(1981)
Proc Natl. Acad. Sci. USA
, vol.78
, pp. 454-458
-
-
Kimura, M.1
-
27
-
-
0032580152
-
A molecular timescale for vertebrate evolution
-
Kumar, S., and S. B. Hedges. 1998. A molecular timescale for vertebrate evolution. Nature 392:917-920.
-
(1998)
Nature
, vol.392
, pp. 917-920
-
-
Kumar, S.1
Hedges, S.B.2
-
28
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S., L. M. Linton, B. Birren et al. (256 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
30
-
-
0023765518
-
The compositional distribution of coding sequences and DNA molecules in humans and murids
-
Mouchiroud, D., C. Gautier, and G. Bemardi. 1988. The compositional distribution of coding sequences and DNA molecules in humans and murids. J. Mol. Evol. 27:311-320.
-
(1988)
J. Mol. Evol.
, vol.27
, pp. 311-320
-
-
Mouchiroud, D.1
Gautier, C.2
Bemardi, G.3
-
31
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
Murphy, W. J., E. Eizirik, W. E. Johnson, Y. P. Zhang, O. A. Ryder, and S. J. O'Brien. 2001. Molecular phylogenetics and the origins of placental mammals. Nature 409:614-618.
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.E.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
32
-
-
0004161838
-
-
Cambridge University Press, Cambridge
-
Press, W. H., S. A. Teukolsky, W. T. Vetterling, and B. P. Flannery. 1992. Numerical recipes in C, the art of scientific computing. Cambridge University Press, Cambridge.
-
(1992)
Numerical Recipes in C, the Art of Scientific Computing
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
33
-
-
0037910313
-
Pattern of transitional mutation biases within and among mammalian genomes
-
Rosenberg, M. S., S. Subramanian, and S. Kumar. 2003. Pattern of transitional mutation biases within and among mammalian genomes. Mol. Biol. Evol. 20:988-993.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 988-993
-
-
Rosenberg, M.S.1
Subramanian, S.2
Kumar, S.3
-
34
-
-
0028804572
-
MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation
-
Smit, A. F., and A. D. Riggs. 1995. MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res. 23:98-102.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 98-102
-
-
Smit, A.F.1
Riggs, A.D.2
-
35
-
-
0028920059
-
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
-
Smit, A. F., G. Toth, A. D. Riggs, and J. Jurka, 1995. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J. Mol. Biol. 246:401-417.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 401-417
-
-
Smit, A.F.1
Toth, G.2
Riggs, A.D.3
Jurka, J.4
-
36
-
-
0023991945
-
Directional mutation pressure and neutral molecular evolution
-
Sueoka, N. 1988. Directional mutation pressure and neutral molecular evolution. Proc. Natl. Acad. Sci. USA 85:2653-2657.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2653-2657
-
-
Sueoka, N.1
-
37
-
-
0037326506
-
Compositional evolution of noncoding DNA in the human and chimpanzee genomes
-
Webster, M. T., N. G. Smith, and H. Ellegren. 2003. Compositional evolution of noncoding DNA in the human and chimpanzee genomes. Mol. Biol. Evol. 20:278-286.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 278-286
-
-
Webster, M.T.1
Smith, N.G.2
Ellegren, H.3
-
38
-
-
0024497416
-
Mutation rates differ among regions of the mammalian genome
-
Wolfe, K. H., P. M. Sharp, and W. H. Li. 1989. Mutation rates differ among regions of the mammalian genome. Nature 337:283-285.
-
(1989)
Nature
, vol.337
, pp. 283-285
-
-
Wolfe, K.H.1
Sharp, P.M.2
Li, W.H.3
-
39
-
-
0036897666
-
Slow molecular clocks in old world monkeys, apes, and humans
-
Yi, S., D. L. Ellsworth, and W. H. Li. 2002. Slow molecular clocks in old world monkeys, apes, and humans. Mol. Biol. Evol. 19:2191-2198.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2191-2198
-
-
Yi, S.1
Ellsworth, D.L.2
Li, W.H.3
-
40
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder, J. A., C. P. Walsh, and T. H. Bestor. 1997. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13:335-340.
-
(1997)
Trends Genet.
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
|