Physical mechanisms and biological significance of supramolecular protein self-assembly

Current Protein and Peptide Science

Volumn 5, Issue 2, 2004, Pages 125-134

  Kentsis, Alex ^a   Borden, Katherine L B ^a  

^a NEW YORK UNIVERSITY   (United States)

Author keywords

Complex network; Mesoscale scaffold; Metabolic channeling; Supramolecular assembly

Indexed keywords

ACTIN; BRCA1 PROTEIN; CAPSID PROTEIN; CLATHRIN; MONOMER; ONCOPROTEIN; POLYMER; PROMYELOCYTIC LEUKEMIA PROTEIN; PYRUVATE DEHYDROGENASE; TUBULIN; TUMOR SUPPRESSOR PROTEIN;

CELL GROWTH; CELL MATURATION; CELL METABOLISM; CHEMICAL PARAMETERS; CHEMICAL REACTION; COWPEA; HUMAN; KINETICS; MAIZE CHLOROTIC MOTTLE; MOLECULAR INTERACTION; MOLECULAR MECHANICS; MOLECULAR SIZE; NONHUMAN; PLANT VIRUS; PROTEIN AGGREGATION; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FUNCTION; PROTEIN STRUCTURE; REGULATORY MECHANISM; REVIEW; STRUCTURE ANALYSIS; THEORY; THERMODYNAMICS; VIRUS CAPSID;

ACTINS; ALGORITHMS; ANIMALS; BIOPHYSICS; CAPSID PROTEINS; CLATHRIN; HUMANS; KINETICS; MACROMOLECULAR SUBSTANCES; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; PROTEINS; PYRUVATE DEHYDROGENASE COMPLEX; THERMODYNAMICS; TUBULIN; ZINC FINGERS;

COWPEA CHLOROTIC MOTTLE VIRUS;

EID: 1642410379     PISSN: 13892037     EISSN: None     Source Type: Journal    
DOI: 10.2174/1389203043486856     Document Type: Review

References (73)

1. Pauling, L. (1935) Proc. Natl. Acad. Sci. USA, 21, 186-91.
2. Goodsell, D. S. (1991) Trends Biochem. Sci., 16, 203-206.
3. Klotz, I. M., Langerman, N. R., and Darnall, D. W. (1970) Annu. Rev. Biochem., 39, 25-62.
4. Monod, J., Wyman, J., and Changeux, J. P. (1965) J. Mol. Biol., 12, 88-118.
5. Caspar, D. L. D., and Klug, A. (1962) Cold Spring Harbor Symp. Quant. Biol., 27, 1-24.
6. Goodsell, D. S., and Olson, A. J. (2000) Annu. Rev. Biophys. Biomol. Struct., 29, 105-53.
7. Fink, A. L. (1998) Fold Des., 3, R9-23.
8. Egelman, E. H. (2003) Curr. Opin. Struct. Biol., 13, 244-8.
9. Addinall, S. G., and Holland, B. (2002) J. Mol. Biol., 318, 219-236.
10. Welch, M. D., and Mullins, R. D. (2002) Annu. Rev. Cell. Dev. Biol., 18, 247-88.
11. Desai, A., and Mitchison, T. J. (1997) Annu. Rev. Cell. Dev. Biol., 13, 83-117.
12. Pollard, T. D., Blanchoin, L., and Mullins, R. D. (2000) Annu. Rev. Biophys. Biomol. Struct., 29, 545-76.
13. Frieden, C. (1983) Proc. Natl. Acad. Sci. USA, 80, 6513-7.
14. Sept, D., and MacCammon, J. A. (2001) Biophys. J., 81, 667-74.
15. Pollard, T. D. (1986) J. Cell. Biol., 103, 2747-54.
16. Frieden, C. (1985) Annu. Rev. Biophys. Chem., 14, 189-210.
17. Kabsch, W., Mannherz, H. G., Suck, D., Pai, E. F., and Holmes, K. C. (1990) Nature, 347, 37-44.
18. Dawson, J. F., Sablin, E. P., Spuduch, J. A., and Fletterick, R. J. (2003) J. Biol. Chem., 278, 1229-38.
19. Chik, J. K., Lindberg, U., and Schutt, C. E. (1996) J. Mol. Biol., 263, 607-23.
20. Walker, R. A., O'Brien, E. T., Pryer, N. K., Soboeiro, M. F., and Voter, M. A. (1988) J. Cell. Biol., 107, 1437-48.
21. Diaz, J. F., Menendez, M., and Andreu, J. M. (1993) Biochemistry, 32, 10067-77.
22. Nogales, E., Wolf, S. G., and Downing, K. H. (1998) Nature, 391, 199-203.
23. Brodsky, F. M., Chen, C. Y., Knuehl, C., Towler, M. C., and Wakeham, D. E. (2001) Annu. Rev. Cell. Dev. Biol., 17, 517-68.
24. Kirchhausen, T. (2000) Annu. Rev. Biochem., 69, 699-727.
25. Lord, E. A., and Wilson, C. B. (1984) The mathematical description of shape and form, Halsted Press, New York.
26. Nossal, R. (2001) Traffic, 2, 138-147.
27. Pearse, B. M. F., Smith, C. J., and Owen, D. J. (2000) Curr. Opin. Struct. Biol., 10, 220-228.
28. Keen, J. H., Willingham, M. C., and Pastan, I. H. (1979) Cell, 16, 303-12.
29. Ybe, J. A., Brodsky, F. M., Hoffman, K., Lin, K., Liu, S. H., Chen, L., Earnest, T. N., Fletterick, R. J., and Hwang, P. K. (1999) Nature, 399, 371-5.
30. Smith, C. J., Grigorieff, N., and Pearse, B. M. F. (1998) EMBO J., 17, 4943-4953.
31. Harrison, S. C. (2001) Curr. Opin. Struct. Biol., 11, 195-199.
32. Speir, J. A., Munshi, S., Wang, G., Baker, T. S., and Johnson, J. E. (1995) Structure, 3, 63-78.
33. Zlotnick, A., Aldrich, R., Johnson, J. E., Ceres, P., and Young, M. J. (2000) Virology, 277, 450-465.
34. Zlotnick, A., Johnson, J. E., Wingfield, P. W., Stahl, S. J., and Endres, D. (1999) Biochemistry, 38, 14644-14652.
35. Hartwell, L. H., Hopfield, J. J., Leibler, S., and Murray, A. W. (1999) Nature, 402, C47-52.
36. Ravasz, E., Somera, A. L., Mongru, D. A., Oltvai, Z. N., and Barabasi, A. L. (2002) Science, 297, 1551-5.
37. Mooney, B. P., Miernyk, J. A., and Randall, D. D. (2002) Annu. Rev. Plant. Biol., 53, 357-75.
38. Sugden, M. C., and Holness, M. J. (2003) Am. J. Physiol. Endocrinol. Metab., 284, E855-E862.
39. Perham, R. N. (1991) Biochemistry, 30, 8501-8512.
40. Berg, A., Westphal, A. H., Bosma, H. J., and de Kok, A. (1998) Eur J Biochem 252, 45-50.
41. Green, J. D. F., Perham, R. N., Ullrich, S. J., and Appella, E. (1992) J. Biol. Chem., 267, 23484-8.
42. Milne, J. L. S., Shi, D., Rosenthal, P. B., Sunshine, J. S., Domingo, G. J., Wu, X., Brooks, B. R., Perham, R. N., Henderson, R., and Subramaniam, S. (2002) EMBO J., 21, 5587-98.
43. Packman, L. C., Stanley, C. J., and Perham, R. N. (1983) Biochem. J., 213, 331-8.
44. Modak, J., Deckwer, W. F., and Zeng, A. P. (2002) Biotechnol. Prog., 18, 1157-1169.
45. Ermakov, G. L., and Golstein, B. N. (1997) Biochemistry (Moscow), 62, 583-595.
46. Saurin, A. J., Borden, K. L., Boddy, M. N., and Freemont, P. S. (1996) Trends Biochem. Sci., 21, 208-14.
47. Borden, K. L., and Freemont, P. S. (1996) Curr. Opin. Struct. Biol., 6, 395-401.
48. Kentsis, A., Gordon, R. E., and Borden, K. L. (2002) Proc. Natl. Acad. Sci. USA, 99, 15404-9.
49. Kentsis, A., and Borden, K. L. B. (2000) Current Protein and Peptide Science, 1, 49-73.
50. Borden, K. L. (2002) Mol. Cell. Biol., 22, 5259-69.
51. Kentsis, A., Gordon, R. E., and Borden, K. L. (2002) Proc. Natl. Acad. Sci. USA, 99, 667-72.
52. Jin, Y., Xu, X. L., Yang, M. C., Wei, F., Ayi, T. C., Bowcock, A. M., and Baer, R. (1997) Proc. Natl. Acad. Sci. USA, 94, 12075-80.
53. Baer, R., and Ludwig, T. (2002) Curr. Opin. Genet. Dev., 12, 86-91.
54. Zheng, N., Wang, P., Jeffrey, P. D., and Pavletich, N. P. (2000) Cell, 102, 533-9.
55. Wegner, A. (1982) Nature. 296, 266-7.
56. Frigon, R. P., and Timasheff, S. N. (1975) Biochemistry, 14, 4567-73.
57. Moritz, M., Braunfeld, M. B., Guenebaut, V., Heuser, J., and Agard, D. A. (2000) Nat. Cell. Biol., 2, 365-70.
58. Grazi, E., Ferri, A., and Cino, S. (1983) Biochem. J., 213, 727-32.
59. Yanagida, T., and Oosawa, F. (1975) Eur. J. Biochem., 56, 547-56.
60. Crane, H. R. (1950) Scientific Monthly, 5, 376-389.
61. Schlunegger, M. P., Bennett, M. J., and Eisenberg, D. (1997) Adv. Protein Chem., 50, 61-122.
62. Bennett, M. J., and Eisenberg, D. (1994) Protein Sci., 3, 1464-1475.
63. Rousseau, F., Schymkowitz, J. W., and Itzhaki, L. S. (2003) Structure (Camb), 11, 243-51.
64. Pasta, S. Y., Raman, B., Ramakrishna, T., and Rao, C. M. (2002) J. Biol. Chem., 277, 45821-8.
65. Lomas, D. A., Evans, D. L., Stone, S. R., Chang, W. S., and Carrell, R. W. (1993) Biochemistry, 32, 500-8.
66. Moran, L. B., Schneider, J. P., Kentsis, A., Reddy, G. A., and Sosnick, T. R. (1999) Proc. Natl. Acad. Sci. USA, 96, 10699-704.
67. Robinson, R. C., Turbedsky, K., Kaiser, D. A., Marchand, J. B., Higgs, H. N., Choe, S., and Pollard, T. D. (2001) Science, 294, 1679-84.
68. Thirumalai, D., Klimov, D. K., and Dima, R. I. (2003) Curr. Opin. Struct. Biol., 13, 146-159.
69. Merlini, G., and Bellotti, V. (2003) N. Engl. J. Med., 349, 583-96.
70. Schirmer, E. C., and Lindquist, S. L. (1997) Proc. Natl. Acad. Sci. USA, 94, 13932-7.
71. Hegde, R. S., Mastrianni, J. A., Scott, M. R., DeFea, K. A., Tremblay, P., Torchia, M., DeArmond, S. J., Prusiner, S. B., and Lingappa, V. R. (1998) Science, 279, 827-34.
72. Lashuel, H. A., Hartley, D., Petre, B. M., Walz, T., and Lansbury, P. T. J. (2002) Nature, 418, 291.
73. Mozzarelli, A., Hofrichter, J., and Eaton, W. A. (1987) Science, 237, 500-6.