-
1
-
-
0028998836
-
High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer
-
Abele U, Schulz GE. 1995. High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer. Protein Sci 4:1262-1271.
-
(1995)
Protein Sci
, vol.4
, pp. 1262-1271
-
-
Abele, U.1
Schulz, G.E.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0021118489
-
Evolution and the tertiary structure of proteins
-
Bajaj M, Blundell T. 1984. Evolution and the tertiary structure of proteins. Annu Rev Biophys Bioeng 13:451-492.
-
(1984)
Annu Rev Biophys Bioeng
, vol.13
, pp. 451-492
-
-
Bajaj, M.1
Blundell, T.2
-
5
-
-
0028361218
-
Archaea and eukaryotes grow closer
-
Barinaga M. 1994. Archaea and eukaryotes grow closer. Science 264:1251.
-
(1994)
Science
, vol.264
, pp. 1251
-
-
Barinaga, M.1
-
6
-
-
0023067286
-
The origin of eukaryote and archaebacterial cells
-
Cavalier-Smith T. 1987. The origin of eukaryote and archaebacterial cells. Ann NY Acad Sci USA 503:17-54.
-
(1987)
Ann NY Acad Sci USA
, vol.503
, pp. 17-54
-
-
Cavalier-Smith, T.1
-
7
-
-
0029870267
-
A component of the 26S proteasome binds on orphan member of the nuclear hormone receptor superfamily
-
Choi HS, Seol W, Moore DD. 1996. A component of the 26S proteasome binds on orphan member of the nuclear hormone receptor superfamily. J Steroid Biochem Mol Biol 56:23-30.
-
(1996)
J Steroid Biochem Mol Biol
, vol.56
, pp. 23-30
-
-
Choi, H.S.1
Seol, W.2
Moore, D.D.3
-
8
-
-
0015987426
-
Prediction of protein conformation
-
Chou PY, Fasman GD. 1974. Prediction of protein conformation. Biochemistry 13:22-245.
-
(1974)
Biochemistry
, vol.13
, pp. 22-245
-
-
Chou, P.Y.1
Fasman, G.D.2
-
9
-
-
0029328549
-
A 200-amino acid ATPase module in search of a basic function
-
Confalonieri F, Duguet M. 1995. A 200-amino acid ATPase module in search of a basic function. Bioessays 17:639-650.
-
(1995)
Bioessays
, vol.17
, pp. 639-650
-
-
Confalonieri, F.1
Duguet, M.2
-
10
-
-
0028140593
-
SAV, an archaebacterial gene with extensive homolgy to a family of highly conserved eukaryotic ATPases
-
Confalonieri F, Marsault J, Duguet M. 1994. SAV, an archaebacterial gene with extensive homolgy to a family of highly conserved eukaryotic ATPases. J Mol Biol 235:396-401.
-
(1994)
J Mol Biol
, vol.235
, pp. 396-401
-
-
Confalonieri, F.1
Marsault, J.2
Duguet, M.3
-
12
-
-
10144261887
-
Unified nomenclature for peroxisome biogenesis factors
-
Distel B, Erdmann R, Gould SJ, Blobel G, Crane DI, Cregg JM, Dodt G, Fujiki Y, Goodman JM, Just WW, Kiel JAKW, Kunau WH, Lazarow PB, Mannaerts GP, Moser HW, Osumi T, Rachubinski RA, Roscher A, Subramani S, Tabak HF, Tsukamoto T, Valle D, Vanderklei I, Vanveldhoven PP, Veenhuis M. 1996. Unified nomenclature for peroxisome biogenesis factors. J Cell Biol 135:1-3.
-
(1996)
J Cell Biol
, vol.135
, pp. 1-3
-
-
Distel, B.1
Erdmann, R.2
Gould, S.J.3
Blobel, G.4
Crane, D.I.5
Cregg, J.M.6
Dodt, G.7
Fujiki, Y.8
Goodman, J.M.9
Just, W.W.10
Kiel, J.A.K.W.11
Kunau, W.H.12
Lazarow, P.B.13
Mannaerts, G.P.14
Moser, H.W.15
Osumi, T.16
Rachubinski, R.A.17
Roscher, A.18
Subramani, S.19
Tabak, H.F.20
Tsukamoto, T.21
Valle, D.22
Vanderklei, I.23
Vanveldhoven, P.P.24
Veenhuis, M.25
more..
-
13
-
-
0026486168
-
Subunit 4 of the 26S protease is a member of a novel eukaryotic ATPase family
-
Dubiel W, Ferrell K, Pratt G, Rechsteiner MC. 1992. Subunit 4 of the 26S protease is a member of a novel eukaryotic ATPase family. J Biol Chem 267:22699-22702.
-
(1992)
J Biol Chem
, vol.267
, pp. 22699-22702
-
-
Dubiel, W.1
Ferrell, K.2
Pratt, G.3
Rechsteiner, M.C.4
-
14
-
-
0024094923
-
Characterization of a component of the yeast secretion machinery: Identification of the SEC18 gene product
-
Eakle KA, Bernstein M, Emr SD. 1988. Characterization of a component of the yeast secretion machinery: Identification of the SEC18 gene product. Mol Cell Biol 8:4098-4109.
-
(1988)
Mol Cell Biol
, vol.8
, pp. 4098-4109
-
-
Eakle, K.A.1
Bernstein, M.2
Emr, S.D.3
-
15
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
16
-
-
0028881024
-
The ATPase activity of purified Cdc48p from Saccharomyces cerevisiae shows complex dependence on ATP-, ADP-, and NADH-concentrations and is completely inhibited by NEM
-
Fröhlich KU, Fries HW, Peters JM, Mecke D. 1995. The ATPase activity of purified Cdc48p from Saccharomyces cerevisiae shows complex dependence on ATP-, ADP-, and NADH-concentrations and is completely inhibited by NEM. Biochim Biophys Acta 1253:25-32.
-
(1995)
Biochim Biophys Acta
, vol.1253
, pp. 25-32
-
-
Fröhlich, K.U.1
Fries, H.W.2
Peters, J.M.3
Mecke, D.4
-
17
-
-
0017873321
-
Identification of predictive sequence motifs limited by protein structure data base size
-
Garnier J, Osgusthorpe DJ, Robson B. 1978. Identification of predictive sequence motifs limited by protein structure data base size. J Mol Biol 120:97-120.
-
(1978)
J Mol Biol
, vol.120
, pp. 97-120
-
-
Garnier, J.1
Osgusthorpe, D.J.2
Robson, B.3
-
18
-
-
0019463779
-
Globin evolution was apparently very rapid in early vertebrates: A reasonable case against the rate-constancy hypothesis
-
Goodman M. 1981. Globin evolution was apparently very rapid in early vertebrates: A reasonable case against the rate-constancy hypothesis. J Mol Evol 17:114-120.
-
(1981)
J Mol Evol
, vol.17
, pp. 114-120
-
-
Goodman, M.1
-
19
-
-
0026671777
-
Isolation of a yeast gene encoding a protein homologous to the human Tat-binding protein TBP-1
-
Goyer C, Lee HS, Malo D, Sonenberg N. 1992. Isolation of a yeast gene encoding a protein homologous to the human Tat-binding protein TBP-1. DNA Cell Biol 11:579-585.
-
(1992)
DNA Cell Biol
, vol.11
, pp. 579-585
-
-
Goyer, C.1
Lee, H.S.2
Malo, D.3
Sonenberg, N.4
-
20
-
-
0026325708
-
Playing with blocks: Some pitfalls of forcing multiple alignments
-
Henikoff S. 1991. Playing with blocks: Some pitfalls of forcing multiple alignments. New Biol 3:1148-1154.
-
(1991)
New Biol
, vol.3
, pp. 1148-1154
-
-
Henikoff, S.1
-
21
-
-
0026410103
-
Automated assembly of protein blocks for database searching
-
Henikoff S, Henikoff JG. 1991. Automated assembly of protein blocks for database searching. Nucleic Acids Res 19:6565-6572.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 6565-6572
-
-
Henikoff, S.1
Henikoff, J.G.2
-
22
-
-
0026605537
-
CLUSTAL V: Improved software for multiple sequence alignment
-
Higgins DJ, Bleasby AJ, Fuchs R. 1992. CLUSTAL V: Improved software for multiple sequence alignment. Comput Appl Biosci 8:189-191.
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 189-191
-
-
Higgins, D.J.1
Bleasby, A.J.2
Fuchs, R.3
-
23
-
-
0024358140
-
Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
-
Iwabe N, Kuma KI, Hasegawa M, Osawa S, Miyata T. 1989. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc Natl Acad Sci USA 86:9355-9359.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 9355-9359
-
-
Iwabe, N.1
Kuma, K.I.2
Hasegawa, M.3
Osawa, S.4
Miyata, T.5
-
24
-
-
0023461218
-
Molecular evolutionary clock and the neutral theory
-
Kimura M. 1987. Molecular evolutionary clock and the neutral theory. J Mol Evol 26:24-33.
-
(1987)
J Mol Evol
, vol.26
, pp. 24-33
-
-
Kimura, M.1
-
25
-
-
0027299142
-
Two complementary approaches to study peroxisome biogenesis in Saccharomyces cerevisiae: Forward and reversed genetics
-
Kunau W-H, Beyer A, Franken T, Gölte K, Marzioch M, Saidowsky J, Skaletz-Rorowski A, Wiebel FF. 1993. Two complementary approaches to study peroxisome biogenesis in Saccharomyces cerevisiae: Forward and reversed genetics. Biochimie 75:209-224.
-
(1993)
Biochimie
, vol.75
, pp. 209-224
-
-
Kunau, W.-H.1
Beyer, A.2
Franken, T.3
Gölte, K.4
Marzioch, M.5
Saidowsky, J.6
Skaletz-Rorowski, A.7
Wiebel, F.F.8
-
26
-
-
0026686760
-
AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP-1 family of ATPases
-
Lee YJ, Wickner RB. 1992. AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP-1 family of ATPases. Yeast 8:787-790.
-
(1992)
Yeast
, vol.8
, pp. 787-790
-
-
Lee, Y.J.1
Wickner, R.B.2
-
27
-
-
0028500688
-
Molecular evolution: Codes, clocks, genes and genomes
-
MacIntyre RJ. 1994. Molecular evolution: Codes, clocks, genes and genomes. Bioessays 16:699-703.
-
(1994)
Bioessays
, vol.16
, pp. 699-703
-
-
MacIntyre, R.J.1
-
28
-
-
0029977889
-
Structures of the rat proteasomal ATPases - Determination of highly conserved structural motifs and rules for their spacing
-
Makino Y, Yogosawa S, Kanemaki M, Yoshida T, Yamano K, Kishimoto T, Moncollin V, Egly JM, Muramatsu M, Tamura T. 1996. Structures of the rat proteasomal ATPases - Determination of highly conserved structural motifs and rules for their spacing. Biochem Biophys Res Commun 220:1049-1054.
-
(1996)
Biochem Biophys Res Commun
, vol.220
, pp. 1049-1054
-
-
Makino, Y.1
Yogosawa, S.2
Kanemaki, M.3
Yoshida, T.4
Yamano, K.5
Kishimoto, T.6
Moncollin, V.7
Egly, J.M.8
Muramatsu, M.9
Tamura, T.10
-
29
-
-
0027408305
-
Sequence similarities between cell regulation factors, heat shock proteins and RNA helicases
-
Mian I. 1993. Sequence similarities between cell regulation factors, heat shock proteins and RNA helicases. Trends Biochem Sci 18:125-127.
-
(1993)
Trends Biochem Sci
, vol.18
, pp. 125-127
-
-
Mian, I.1
-
30
-
-
0028149757
-
The ATPase activity of N-ethylmaleimide-sensitive fusion protein (NSF) is regulated by soluble NSF attachment proteins
-
Morgan A, Dimaline R, Burgoyne RD. 1994. The ATPase activity of N-ethylmaleimide-sensitive fusion protein (NSF) is regulated by soluble NSF attachment proteins. J Biol Chem 269:29347-29350.
-
(1994)
J Biol Chem
, vol.269
, pp. 29347-29350
-
-
Morgan, A.1
Dimaline, R.2
Burgoyne, R.D.3
-
31
-
-
0026563170
-
Evolution of organellar proton-ATPases
-
Nelson N. 1992. Evolution of organellar proton-ATPases. Biochim Biophys Acta 1100:109-124.
-
(1992)
Biochim Biophys Acta
, vol.1100
, pp. 109-124
-
-
Nelson, N.1
-
32
-
-
0026702012
-
BCS1, a novel gene required for the expression of functional Rieske iron-sulfur protein in Saccharomyces cerevisiae
-
Nobrega FG, Nobrega MP, Tzagoloff A. 1992. BCS1, a novel gene required for the expression of functional Rieske iron-sulfur protein in Saccharomyces cerevisiae. EMBO J 11:3821-3829.
-
(1992)
EMBO J
, vol.11
, pp. 3821-3829
-
-
Nobrega, F.G.1
Nobrega, M.P.2
Tzagoloff, A.3
-
33
-
-
0023822631
-
Relationships between gene trees and species trees
-
Pamilo P, Nei M. 1988. Relationships between gene trees and species trees. Mol Biol Evol 5:568-583.
-
(1988)
Mol Biol Evol
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
34
-
-
0025272240
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
Pearson WR. 1990. Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 183:63-98.
-
(1990)
Methods Enzymol
, vol.183
, pp. 63-98
-
-
Pearson, W.R.1
-
37
-
-
0024078021
-
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins
-
Rooman MJ, Wodak SJ. 1988. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. Nature 335:45-49.
-
(1988)
Nature
, vol.335
, pp. 45-49
-
-
Rooman, M.J.1
Wodak, S.J.2
-
38
-
-
0027169638
-
Improved prediction of protein secondary structure by use of sequence profiles and neural networks
-
Rost B, Sander C. 1993a. Improved prediction of protein secondary structure by use of sequence profiles and neural networks. Proc Natl Acad Sci USA 90:7558-7562.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 7558-7562
-
-
Rost, B.1
Sander, C.2
-
39
-
-
0027291015
-
Prediction of protein structure at better than 70% accuracy
-
Rost B, Sander C. 1993b. Prediction of protein structure at better than 70% accuracy. J Mol Biol 232:584-599.
-
(1993)
J Mol Biol
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
40
-
-
0028158628
-
An automatic mail server for protein secondary structure prediction
-
Rost B, Sander C, Schneider R. 1994. An automatic mail server for protein secondary structure prediction. Comput Appl Biosci 10:53-60.
-
(1994)
Comput Appl Biosci
, vol.10
, pp. 53-60
-
-
Rost, B.1
Sander, C.2
Schneider, R.3
-
41
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M, 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
43
-
-
0028071874
-
Identification of a set of yeast genes coding for a novel family of putative ATPases with high similarity to constituents of the 26S protease complex
-
Schnall R, Mannhaupt G, Stucka R, Tauer R, Ehnle S, Schwarzlose C, Vetter I, Feldmann H. 1994. Identification of a set of yeast genes coding for a novel family of putative ATPases with high similarity to constituents of the 26S protease complex. Yeast 10:1141-1155.
-
(1994)
Yeast
, vol.10
, pp. 1141-1155
-
-
Schnall, R.1
Mannhaupt, G.2
Stucka, R.3
Tauer, R.4
Ehnle, S.5
Schwarzlose, C.6
Vetter, I.7
Feldmann, H.8
-
44
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider TD, Stephens RM. 1990. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res 15:6097-6100.
-
(1990)
Nucleic Acids Res
, vol.15
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
45
-
-
0026100921
-
A workbench for multiple alignment construction and analysis
-
Schuler GD, Altschul SF, Lipman DJ. 1991. A workbench for multiple alignment construction and analysis. Proteins 9:180-190.
-
(1991)
Proteins
, vol.9
, pp. 180-190
-
-
Schuler, G.D.1
Altschul, S.F.2
Lipman, D.J.3
-
46
-
-
12944300317
-
Binding of nucleotides by proteins
-
Schulz GE. 1992. Binding of nucleotides by proteins. Curr Opin Struct Biol 2:61-67.
-
(1992)
Curr Opin Struct Biol
, vol.2
, pp. 61-67
-
-
Schulz, G.E.1
-
47
-
-
0029914905
-
Active site comparisons highlight structural similarities between myosin and other p-loop proteins
-
Smith CA, Rayment I. 1996. Active site comparisons highlight structural similarities between myosin and other p-loop proteins. Biophys J 70:1590-1602
-
(1996)
Biophys J
, vol.70
, pp. 1590-1602
-
-
Smith, C.A.1
Rayment, I.2
-
48
-
-
0030062797
-
A member of the phylogenetically conserved CAD family of transcriptional regulators is dramatically up-regulated during the programmed cell death of skeletal muscle in the tobacco hawkmoth Manduca Sexta
-
Sun DH, Sathyanarayana UG, Johnston SA, Schwartz LM. 1996. A member of the phylogenetically conserved CAD family of transcriptional regulators is dramatically up-regulated during the programmed cell death of skeletal muscle in the tobacco hawkmoth Manduca Sexta. Dev Biol 173:499-509.
-
(1996)
Dev Biol
, vol.173
, pp. 499-509
-
-
Sun, D.H.1
Sathyanarayana, U.G.2
Johnston, S.A.3
Schwartz, L.M.4
-
49
-
-
0026681291
-
Alterations in a yeast protein resembling HIV Tat-binding protein relieve requirement for an acidic activation domain in GAL4
-
Swaffield JC, Bromberg JF, Johnston SA. 1992. Alterations in a yeast protein resembling HIV Tat-binding protein relieve requirement for an acidic activation domain in GAL4. Nature 357:698-700.
-
(1992)
Nature
, vol.357
, pp. 698-700
-
-
Swaffield, J.C.1
Bromberg, J.F.2
Johnston, S.A.3
-
50
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
51
-
-
0029046744
-
An assessment of amino acid exchange matrices in aligning protein sequences: The twilight zone revisited
-
Vogt G, Etzold T, Argos P. 1995. An assessment of amino acid exchange matrices in aligning protein sequences: The twilight zone revisited. J Mol Biol 249:816-831.
-
(1995)
J Mol Biol
, vol.249
, pp. 816-831
-
-
Vogt, G.1
Etzold, T.2
Argos, P.3
-
52
-
-
0001607723
-
Distantly related sequences in the alpha- and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker JE, Saraste M, Runswick MJ, Gay NJ. 1982. Distantly related sequences in the alpha-and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1:945-951.
-
(1982)
EMBO J
, vol.1
, pp. 945-951
-
-
Walker, J.E.1
Saraste, M.2
Runswick, M.J.3
Gay, N.J.4
-
53
-
-
0028846974
-
Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins
-
West MW, Hecht MH. 1995. Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins. Protein Sci 4:2032-2039.
-
(1995)
Protein Sci
, vol.4
, pp. 2032-2039
-
-
West, M.W.1
Hecht, M.H.2
-
54
-
-
0028132782
-
N-ethylmaleimide-sensitive fusion protein: A trimeric ATPase whose hydrolysis of ATP is required for membrane fusion
-
Whiteheart SW. 1994. N-ethylmaleimide-sensitive fusion protein: A trimeric ATPase whose hydrolysis of ATP is required for membrane fusion. J Cell Biol 126:945-954.
-
(1994)
J Cell Biol
, vol.126
, pp. 945-954
-
-
Whiteheart, S.W.1
-
56
-
-
0024342254
-
A fusion protein required for vesicle-mediated transport in both mammalian cells and yeast
-
Wilson DW, Wilcox CA, Flynn GC, Chen E, Kuang WJ, Henzel WJ, Block MR, Ullrich A, Rothman JE. 1989. A fusion protein required for vesicle-mediated transport in both mammalian cells and yeast. Nature 339:355-359.
-
(1989)
Nature
, vol.339
, pp. 355-359
-
-
Wilson, D.W.1
Wilcox, C.A.2
Flynn, G.C.3
Chen, E.4
Kuang, W.J.5
Henzel, W.J.6
Block, M.R.7
Ullrich, A.8
Rothman, J.E.9
-
57
-
-
0028008360
-
Similarity between putative ATP-binding sites in land plant plastid ORF2280 proteins and the FtsH/CDC48 family of ATPases
-
Wolle KH. 1994. Similarity between putative ATP-binding sites in land plant plastid ORF2280 proteins and the FtsH/CDC48 family of ATPases. Curr Genet 25:379-383.
-
(1994)
Curr Genet
, vol.25
, pp. 379-383
-
-
Wolle, K.H.1
-
58
-
-
0001673027
-
Jackknife, bootstrap and other resampling plans in regression analysis
-
Wu CFJ. 1986. Jackknife, bootstrap and other resampling plans in regression analysis. Ann Stat 14:1261-1295.
-
(1986)
Ann Stat
, vol.14
, pp. 1261-1295
-
-
Wu, C.F.J.1
|