메뉴 건너뛰기




Volumn 64, Issue 10, 1998, Pages 3683-3689

Estimation of the relative abundance of different Bacteroides and Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR- amplified 16S rRNA gene sequences

Author keywords

[No Author keywords available]

Indexed keywords

RESTRICTION ENDONUCLEASE; RNA 16S;

EID: 0031691877     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.64.10.3683-3689.1998     Document Type: Article
Times cited : (107)

References (38)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amman, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amman, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 3
    • 0028299632 scopus 로고
    • Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen
    • Avguštin, G., F. Wright, and H. J. Flint. 1994. Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen. Int. J. Syst. Bacteriol. 44:246-255.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 246-255
    • Avguštin, G.1    Wright, F.2    Flint, H.J.3
  • 4
    • 0043113323 scopus 로고    scopus 로고
    • Phenotypic diversity among rumen isolates of Prevotella ruminicola: Proposal for Prevotella brevis sp. nov., Prevotella bryantii sp. nov., Prevotella albensis sp. nov., and redefinition of Prevotella ruminicola
    • Avguštin, G., R. J. Wallace, and H. J. Flint. 1997. Phenotypic diversity among rumen isolates of Prevotella ruminicola: proposal for Prevotella brevis sp. nov., Prevotella bryantii sp. nov., Prevotella albensis sp. nov., and redefinition of Prevotella ruminicola. Int. J. Syst. Bacteriol. 47:284-288.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 284-288
    • Avguštin, G.1    Wallace, R.J.2    Flint, H.J.3
  • 6
    • 0026467696 scopus 로고
    • Use of DNA probes to monitor nutritional effects on the ruminal prokaryotes and Fibrobacter succinogenes S85
    • Briesacher, S. L., T. May, K. N. Grigsby, M. S. Kerley, R. V. Anthony, and J. A. Paterson. 1992. Use of DNA probes to monitor nutritional effects on the ruminal prokaryotes and Fibrobacter succinogenes S85. J. Anim. Sci. 70: 289-295.
    • (1992) J. Anim. Sci. , vol.70 , pp. 289-295
    • Briesacher, S.L.1    May, T.2    Grigsby, K.N.3    Kerley, M.S.4    Anthony, R.V.5    Paterson, J.A.6
  • 7
    • 0019513663 scopus 로고
    • Gene organisation and primary structure of a ribosomal DNA operon from Escherichia coli
    • Brosius, J., T. J. Dull, D. Sleeter, and H. F. Noller. 1981. Gene organisation and primary structure of a ribosomal DNA operon from Escherichia coli. J. Mol. Biol. 148:107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.3    Noller, H.F.4
  • 8
    • 0015464618 scopus 로고
    • Commentary on the Hungate technique for culture of anaerobic bacteria
    • Bryant, M. P. 1972. Commentary on the Hungate technique for culture of anaerobic bacteria. Am. J. Clin. Nutr. 25:1324-1328.
    • (1972) Am. J. Clin. Nutr. , vol.25 , pp. 1324-1328
    • Bryant, M.P.1
  • 9
    • 0002032609 scopus 로고
    • Bacteroides ruminicola n. sp. and Succinimonas amylolytica, the new species and genus
    • Bryant, M. P., N. Small, C. Bouma, and H. Chu. 1958. Bacteroides ruminicola n. sp. and Succinimonas amylolytica, the new species and genus. J. Bacteriol. 76:15-23.
    • (1958) J. Bacteriol. , vol.76 , pp. 15-23
    • Bryant, M.P.1    Small, N.2    Bouma, C.3    Chu, H.4
  • 11
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 13
    • 0002094193 scopus 로고    scopus 로고
    • Bacteria, fungi and protozoa of the rumen
    • R. I. Mackie, B. A. White, and R. E. Isaacson (ed.), Chapman and Hall, New York, N.Y.
    • Hespell, R. B., D. E. Akin, and B. A. Dehority. 1996. Bacteria, fungi and protozoa of the rumen, p. 59-141. In R. I. Mackie, B. A. White, and R. E. Isaacson (ed.), Gastrointestinal microbiology, vol. 2. Chapman and Hall, New York, N.Y.
    • (1996) Gastrointestinal Microbiology , vol.2 , pp. 59-141
    • Hespell, R.B.1    Akin, D.E.2    Dehority, B.A.3
  • 14
    • 0029864203 scopus 로고    scopus 로고
    • An rRNA approach for assessing the role of obligate amino acid-fermenting bacteria in ruminal amino acid deamination
    • Krause, D. O., and J. B. Russell. 1996. An rRNA approach for assessing the role of obligate amino acid-fermenting bacteria in ruminal amino acid deamination. Appl. Env. Microbiol. 62:815-821.
    • (1996) Appl. Env. Microbiol. , vol.62 , pp. 815-821
    • Krause, D.O.1    Russell, J.B.2
  • 15
    • 0027952597 scopus 로고
    • Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • Laguerre, G., M.-R. Allard, F. Revoy, and N. Amrger. 1994. Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol. 60:56-63.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 56-63
    • Laguerre, G.1    Allard, M.-R.2    Revoy, F.3    Amrger, N.4
  • 16
    • 0020174804 scopus 로고
    • Diurnal variations in bacterial numbers and fluid parameters in ruminal contents of animals fed low- or high-forage diets
    • Leedle, J. A. Z., M. P. Bryant, and R. B. Hespell. 1982. Diurnal variations in bacterial numbers and fluid parameters in ruminal contents of animals fed low-or high-forage diets. Appl. Environ. Microbiol. 44:402-412.
    • (1982) Appl. Environ. Microbiol. , vol.44 , pp. 402-412
    • Leedle, J.A.Z.1    Bryant, M.P.2    Hespell, R.B.3
  • 18
    • 0025955787 scopus 로고
    • Taxonomic relationships among strains of the anaerobic bacterium Bacteroides ruminicola determined by DNA and extracellular polysaccharide analysis
    • Mannarelli, B. M., L. D. Ericsson, and R. J. Stack. 1991. Taxonomic relationships among strains of the anaerobic bacterium Bacteroides ruminicola determined by DNA and extracellular polysaccharide analysis. Appl. Environ. Microbiol. 57:2975-2980.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 2975-2980
    • Mannarelli, B.M.1    Ericsson, L.D.2    Stack, R.J.3
  • 19
    • 0027120740 scopus 로고
    • Selective isolation of bacteria with dipeptidyl aminopeptidase I activity from the rumen
    • McKain, N., R. J. Wallace, and N. D. Watt. 1992. Selective isolation of bacteria with dipeptidyl aminopeptidase I activity from the rumen. FEMS Microbiol. Lett. 95:169-174.
    • (1992) FEMS Microbiol. Lett. , vol.95 , pp. 169-174
    • McKain, N.1    Wallace, R.J.2    Watt, N.D.3
  • 20
    • 0027163875 scopus 로고
    • Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantification of the ruminal bacterium Synergistes jonesii in a mixed population chemostat
    • McSweeney, C. S., R. I. Mackie, A. A. Odenyo, and D. A. Stahl. 1993. Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantification of the ruminal bacterium Synergistes jonesii in a mixed population chemostat. Appl. Environ. Microbiol. 59: 1607-1612.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1607-1612
    • McSweeney, C.S.1    Mackie, R.I.2    Odenyo, A.A.3    Stahl, D.A.4
  • 21
    • 0019820465 scopus 로고
    • Long-term nutrient starvation of continuously cultured (nutrient limited) Selenomonas ruminantium
    • Mink, R. W., and R. B. Hespell. 1981. Long-term nutrient starvation of continuously cultured (nutrient limited) Selenomonas ruminantium. J. Bacteriol. 148:541-546.
    • (1981) J. Bacteriol. , vol.148 , pp. 541-546
    • Mink, R.W.1    Hespell, R.B.2
  • 23
    • 0028184602 scopus 로고
    • Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs, and D. M. Karl. 1994. Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 60:871-879.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 871-879
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 24
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of gene encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel, U., B. Engelen, A. Felske, J. Snaidar, A. Weishuber, R. I. Amann, W. Ludwig, and H. Backhaus. 1996. Sequence heterogeneities of gene encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178:5636-5643.
    • (1996) J. Bacteriol. , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidar, J.4    Weishuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 27
    • 0021719465 scopus 로고
    • Characterization of predominant bacteria from the colons of normal and dysenteric pigs
    • Robinson, I. M., S. C. Whipp, J. A. Bucklin, and M. J. Allison. 1984. Characterization of predominant bacteria from the colons of normal and dysenteric pigs. Appl. Environ. Microbiol. 48:964-969.
    • (1984) Appl. Environ. Microbiol. , vol.48 , pp. 964-969
    • Robinson, I.M.1    Whipp, S.C.2    Bucklin, J.A.3    Allison, M.J.4
  • 28
    • 0000240137 scopus 로고
    • The genus Bacteroides and related taxa
    • A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Scheifer (ed.), Springer-Verlag, New York, N.Y.
    • Shah, H. N. 1992. The genus Bacteroides and related taxa, p. 3593-3607. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Scheifer (ed.), The prokaryotes: a handbook on the biology of bacteria, isolation, identification, application, 2nd ed. Springer-Verlag, New York, N.Y.
    • (1992) The Prokaryotes: A Handbook on the Biology of Bacteria, Isolation, Identification, Application, 2nd Ed. , pp. 3593-3607
    • Shah, H.N.1
  • 29
    • 0025344613 scopus 로고
    • Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides
    • Shah, H. N., and M. D. Collins. 1990. Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int. J. Syst. Bacteriol. 40:205-208.
    • (1990) Int. J. Syst. Bacteriol. , vol.40 , pp. 205-208
    • Shah, H.N.1    Collins, M.D.2
  • 30
    • 0024005650 scopus 로고
    • Use of phylogenetically based hybridization probes for studies in ruminal microbial ecology
    • Stahl, D. A., B. Flesher, H. R. Mansfield, and L. Montgomery. 1988. Use of phylogenetically based hybridization probes for studies in ruminal microbial ecology. Appl. Environ. Microbiol. 54:1079-1084.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.2    Mansfield, H.R.3    Montgomery, L.4
  • 31
    • 0003342811 scopus 로고    scopus 로고
    • The rumen bacteria
    • P. N. Hobson and C. S. Stewart (ed.), Blackie, London, United Kingdom
    • Stewart, C. S., H. J. Flint, and M. P. Bryant. 1997. The rumen bacteria, p. 10-72. In P. N. Hobson and C. S. Stewart (ed.), The rumen microbial ecosystem. Blackie, London, United Kingdom.
    • (1997) The Rumen Microbial Ecosystem , pp. 10-72
    • Stewart, C.S.1    Flint, H.J.2    Bryant, M.P.3
  • 32
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 33
    • 0025198865 scopus 로고
    • Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage based diets
    • van Gylswyk, N. O. 1990. Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage based diets. FEMS Microbiol. Ecol. 73:243-254.
    • (1990) FEMS Microbiol. Ecol. , vol.73 , pp. 243-254
    • Van Gylswyk, N.O.1
  • 34
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • von Wintingerode, F., U. B. Göbel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Von Wintingerode, F.1    Göbel, U.B.2    Stackebrandt, E.3
  • 35
    • 0029881547 scopus 로고    scopus 로고
    • PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
    • Wang, R.-F., W.-W. Cao, and C. E. Cernaglia. 1996. PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62:1242-1247.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1242-1247
    • Wang, R.-F.1    Cao, W.-W.2    Cernaglia, C.E.3
  • 36
  • 37
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson, K. H., and R. B. Blitchington. 1996. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:2273-2278.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2
  • 38
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.