Cell-type-specific regulation of distinct sets of gene targets by Pax3 and Pax3/FKHR

Oncogene

Volumn 24, Issue 11, 2005, Pages 1860-1872

  Begum, Salma ^a   Emani, Nashmil ^a   Cheung, Albert ^a   Wilkins, Olivia ^a   Der, Sandy ^a   Hamel, Paul A ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Gene targets; Microarray; Pax3; Pax3 FKHR; Rhabdomyosarcoma

Indexed keywords

BONE MORPHOGENETIC PROTEIN 4; HYBRID PROTEIN; TRANSCRIPTION FACTOR FKHR; TRANSCRIPTION FACTOR PAX3; DNA BINDING PROTEIN; FORKHEAD TRANSCRIPTION FACTOR; FOXO1A PROTEIN, HUMAN; PAIRED BOX TRANSCRIPTION FACTOR; PAX3 PROTEIN, HUMAN; PRIMER DNA; RNA; TRANSCRIPTION FACTOR;

ARTICLE; CELL TYPE; CHROMATIN; CONTROLLED STUDY; DNA MICROARRAY; EPITHELIUM; GENE CONTROL; GENE EXPRESSION; GENE IDENTIFICATION; GENE TARGETING; HUMAN; HUMAN CELL; HYPOTHESIS; IMMUNOPRECIPITATION; MESENCHYME CELL; OSTEOSARCOMA CELL; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN FUNCTION; RHABDOMYOSARCOMA; SIGNAL TRANSDUCTION; 5' UNTRANSLATED REGION; BONE TUMOR; GENE EXPRESSION REGULATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; OSTEOSARCOMA; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TUMOR CELL LINE;

5' UNTRANSLATED REGIONS; BONE NEOPLASMS; CELL LINE, TUMOR; DNA PRIMERS; DNA-BINDING PROTEINS; FORKHEAD TRANSCRIPTION FACTORS; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; OSTEOSARCOMA; PAIRED BOX TRANSCRIPTION FACTORS; RECOMBINANT FUSION PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RHABDOMYOSARCOMA; RNA, NEOPLASM; TRANSCRIPTION FACTORS;

EID: 16244385890     PISSN: 09509232     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.onc.1208315     Document Type: Article

References (84)

1. Anderson J, Gordon A, Pritchard-Jones K and Shipley J. (1999). Genes Chromosomes Cancer, 26, 275-285.
2. Anderson J, Ramsay A, Gould S and Pritchard-Jones K. (2001). Am. J. Pathol., 159, 1089-1096.
3. Baldwin CT, Lipsky NR, Hoth CF, Cohen T, Mamuya W and Milunsky A. (1994). Hum. Mutat., 3, 205-211.
4. Barrios A, Poole RJ, Durbin L, Brennan C, Holder N and Wilson SW. (2003). Curr. Biol., 13, 1571-1582.
5. Bennicelli JL, Edwards RH and Barr FG. (1996). Proc. Natl. Acad. Sci. USA, 93, 5455-5459.
6. Bernasconi M, Remppis A, Fredericks WJ, Rauscher III FJ and Schafer BW. (1996). Proc. Natl. Acad. Sci. USA, 93, 13164-13169.
7. Blake J and Ziman MR. (2003). Histol. Histopathol., 18, 529-539.
8. Bober E, Franz T, Arnold HH, Gruss P and Tremblay P. (1994). Development, 120, 603-612.
9. Bouizar Z, Spyratos F, Deytieux S, de Vernejoul MC and Jullienne A. (1993). Cancer Res., 53, 5076-5078.
10. Buckley NE, Hansson S, Harta G and Mezey E. (1998). Neuroscience, 82, 1131-1149.
11. Bundred NJ, Walls J and Ratcliffe WA. (1996). Ann. R. Coll. Surg. Engl., 78, 354-358.
12. Cao Y and Wang C. (2000). J. Biol. Chem., 275, 9854-9862.
13. Chalepakis G and Gruss P. (1995). Gene, 162, 267-270.
14. Chalepakis G, Goulding M, Read A, Strachan T and Gruss P. (1994a). Proc. Natl. Acad. Sci. USA, 91, 3685-3689.
15. Chalepakis G, Wijnholds J and Gruss P. (1994b). Nucleic Acids Res., 22, 3131-3137.
16. Chang C, Holtzman DA, Chau S, Chickering T, Woolf EA, Holmgren LM, Bodorova J, Gearing DP, Holmes WE and Brivanlou AH. (2001). Nature, 410, 483-487.
17. Chirgwin JM and Guise TA. (2000). Crit. Rev. Eukaryot. Gene Expr., 10, 159-178.
18. Conway SJ, Henderson DJ and Copp AJ. (1997a). Development, 124, 505-514.
19. Conway SJ, Henderson DJ, Kirby ML, Anderson RH and Copp AJ. (1997b). Cardiovasc. Res., 36, 163-173.
20. De Bellard ME, Ching W, Gossler A and Bronner-Fraser M. (2002). Dev. Biol., 249, 121-130.
21. Dietrich S, Schubert FR and Gruss P. (1993). Mech. Dev., 44, 189-207.
22. Dunbar ME and Wysolmerski JJ. (1999). J. Mammary Gland Biol. Neoplasia, 4, 21-34.
23. Durbin L, Brennan C, Shiomi K, Cooke J, Barrios A, Shanmugalingam S, Guthrie B, Lindberg R and Holder N. (1998). Genes Dev., 12, 3096-3109.
24. Elbashir SM, Lendeckel W and Tuschl T. (2001). Genes Dev., 15, 188-200.
25. Epstein JA, Shapiro DN, Cheng J, Lam PY and Maas RL. (1996). Proc. Natl. Acad. Sci. USA, 93, 4213-4218.
26. Epstein JA, Song B, Lakkis M and Wang C. (1998). Mol. Cell. Biol., 18, 4118-4130.
27. Farquharson C, Jefferies D, Seawright E and Houston B. (2001). Endocrinology, 142, 4131-4140.
28. Foley J, Dann P, Hong J, Cosgrove J, Dreyer B, Rimm D, Dunbar M, Philbrick W and Wysolmerski J. (2001). Development, 128, 513-525.
29. Fortin AS, Underbill DA and Gros P. (1997). Hum. Mol. Genet., 6, 1781-1790.
30. Fredericks WJ, Ayyanathan K and Rauscher III FJ. (2001). Cancer Lett., 162 (Suppl), S23-S32.
31. Fredericks WJ, Galili N, Mukhopadhyay S, Rovera G, Bennicelli J, Barr FG and Rauscher III FJ. (1995). Mol. Cell. Biol., 15, 1522-1535.
32. Gerard M, Abitbol M, Delezoide AL, Dufier JL, Mallet J and Vekemans M. (1995). C. R. Acad. Sci. Ser. III, 318, 57-66.
33. Goulding MD, Chalepakis G, Deutsch U, Erselius JR and Gruss P. (1991). EMBO J., 10, 1135-1147.
34. Guise TA, Yin JJ, Taylor SD, Kumagai Y, Dallas M, Boyce BF, Yoneda T and Mundy GR. (1996). J. Clin. Invest., 98, 1544-1549.
35. He TC, Zhou S, da Costa LT, Yu J, Kinzler KW and Vogelstein B. (1998). Proc. Natl. Acad. Sci. USA, 95, 2509-2514.
36. Hollenbach AD, Sublett JE, McPherson CJ and Grosveld G. (1999). EMBO J., 18, 3702-3711.
37. Hoth CF, Milunsky A, Lipsky N, Sheffer R, Clarren SK and Baldwin CT. (1993). Am. J. Hum. Genet., 52, 455-462.
38. Hu H. (1999). Neuron, 23, 703-711.
39. Johnson J, Rhee J, Parsons SM, Brown D, Olson EN and Rawls A. (2001). Dev. Biol., 229, 176-187.
40. Kaestner KH, Knochel W and Martinez DE. (2000). Genes Dev., 14, 142-146.
41. Kawasaki H, Takayama J, Nagasaki K, Yamaguchi K and Ohira M. (1998). J. Pediatr. Hematol. Oncol., 20, 327-329.
42. Khan J, Bittner ML, Saal LH, Teichmann U, Azorsa DO, Gooden GC, Pavan WJ, Trent JM and Meltzer PS. (1999). Proc. Natl. Acad. Sci. USA, 96, 13264-13269.
43. Khan J, Simon R, Bittner M, Chen Y, Leighton SB, Pohida T, Smith PD, Jiang Y, Gooden GC, Trent JM and Meltzer PS. (1998). Cancer Res., 58, 5009-5013.
44. Kissin MW, Henderson MA, Danks JA, Hayman JA, Bennett RC and Martin TJ. (1993). Eur. J. Surg. Oncol., 19, 134-142.
45. Koblar SA, Krull CE, Pasquale EB, McLennan R, Peale FD, Cerretti DP and Bothwell M. (2000). J. Neurobiol., 42, 437-447.
46. Kwang SJ, Brugger SM, Lazik A, Merrill AE, Wu LY, Liu YH, Ishii M, Sangiorgi FO, Rauchman M, Sucov HM, Maas RL and Maxson Jr RE. (2002). Development, 129, 527-538.
47. Lagutina I, Conway SJ, Sublett J and Grosveld GC. (2002). Mol. Cell. Biol., 22, 7204-7216.
48. Lam PY, Sublett JE, Hollenbach AD and Roussel MF. (1999). Mol. Cell Biol., 19, 594-601.
49. Libura J, Drukala J, Majka M, Tomescu O, Navenot JM, Kucia M, Marquez L, Peiper SC, Barr FG, Janowska-Wieczorek A and Ratajczak MZ. (2002). Blood, 100, 2597-2606.
50. Luo T, Matsuo-Takasaki M, Lim JH and Sargent TD. (2001). Int. J. Dev. Biol., 45, 681-684.
51. Mayanil CS, George D, Freilich L, Miljan EJ, Mania-Farnell B, McLone DG and Bremer EG. (2001). J. Biol. Chem., 276, 49299-49309.
52. Mayanil CS, George D, Mania-Farnell B, Bremer CL, McLone DG and Bremer EG. (2000). J. Biol. Chem., 275, 23259-23266.
53. Nguyen Ba-Charvet KT, Brose K, Marillat V, Kidd T, Goodman CS, Tessier-Lavigne M, Sotelo C and Chedotal A. (1999). Neuron, 22, 463-473.
54. Park GT and Morasso MI. (2002). Nucleic Acids Res., 30, 515-522.
55. Popkin DL, Watson MA, Karaskov E, Dunn GP, Bremner R and Virgin IV HW. (2003). Proc. Natl. Acad. Sci. USA, 100, 14309-14314.
56. Poser I and Bosserhoff AK. (2004). Histol. Histopathol., 19, 173-188.
57. Relaix F, Polimeni M, Rocancourt D, Ponzetto C, Schafer BW and Buckingham M. (2003). Genes Dev., 17, 2950-2965.
58. Ross JJ, Shimmi O, Vilmos P, Petryk A, Kim H, Gaudenz K, Hermanson S, Ekker SC, O'Connor MB and Marsh JL. (2001). Nature, 410, 479-483.
59. Scheidler S, Fredericks WJ, Rauscher III FJ, Barr FG and Vogt PK. (1996). Proc. Natl. Acad. Sci. USA, 93, 9805-9809.
60. Schubert FR, Tremblay P, Mansouri A, Faisst AM, Kammandel B, Lumsden A, Gruss P and Dietrich S. (2001). Dev. Dyn., 222, 506-521.
61. Scott IC, Blitz IL, Pappano WN, Maas SA, Cho KW and Greenspan DS. (2001). Nature, 410, 475-478.
62. Sebag M, Henderson J, Goltzman D and Kremer R. (1994). Am. J. Physiol., 267, C723-C730.
63. Shapiro DN, Sublett JE, Li B, Downing JR and Naeve CW. (1993). Cancer Res., 53, 5108-5112.
64. Song ZH and Zhong M. (2000). J. Pharmacol. Exp. Ther., 294, 204-209.
65. Sublett JE, Jeon IS and Shapiro DN. (1995). Oncogene, 11, 545-552.
66. Tassabehji M, Newton VE, Leverton K, Turnbull K, Seemanova E, Kunze J, Sperling K, Strachan T and Read AP. (1994). Hum. Mol. Genet., 3, 1069-1074.
67. Terzic J and Saraga-Babic M. (1999). Int. J. Dev. Biol., 43, 501-508.
68. Tremblay P, Dietrich S, Mericskay M, Schubert FR, Li Z and Paulin D. (1998). Dev. Biol., 203, 49-61.
69. Tremblay P, Kessel M and Gruss P. (1995). Dev. Biol., 171, 317-329.
70. Underbill DA and Gros P. (1997). J. Biol. Chem., 272, 14175-14182.
71. Underhill DA, Vogan KJ and Gros P. (1995). Proc. Natl. Acad. Sci. USA, 92, 3692-3696.
72. Vachtenheim J and Novotna H. (1999). Cell. Mol. Biol. (Noisy-le-grand), 45, 1075-1082.
73. Vortkamp A, Lee K, Lanske B, Segre GV, Kronenberg HM and Tabin CJ. (1996). Science, 273, 613-622.
74. Wang B, Xiao Y, Ding BB, Zhang N, Yuan X, Gui L, Qian KX, Duan S, Chen Z, Rao Y and Geng JG. (2003). Cancer Cell, 4, 19-29.
75. Wang HU and Anderson DJ. (1997). Neuron, 18, 383-396.
76. Wardle FC, Angerer LM, Angerer RC and Dale L. (1999a). Dev. Biol., 206, 63-72.
77. Wardle FC, Welch JV and Dale L. (1999b). Mech. Dev., 86, 75-85.
78. Weinmann AS, Hartley SM, Zhang T, Zhang MQ and Farnham PJ. (2001). Mol. Cell. Biol., 21, 6820-6832.
79. Wells J, Yan PS, Cechvala M, Huang T and Farnham PJ. (2003). Oncogene, 22, 1445-1460.
80. Wiggan O and Hamel PA. (2002). J. Cell Sci., 115, 531-541.
81. Wiggan O, Fadel MP and Hamel PA. (2002). J. Cell Sci., 115, 517-529.
82. Wiggan O, Taniguchi-Sidle A and Hamel PA. (1998). Oncogene, 16, 227-236.
83. Xia SJ, Pressey JG and Barr FG. (2002). Cancer Biol. Ther., 1, 97-104.
84. Yu K, Srinivasan S, Shimmi O, Biehs B, Rashka KE, Kimelman D, O'Connor MB and Bier E. (2000). Development, 127, 2143-2154.