INVENTORY AND EVOLUTION OF FUNGAL ABC PROTEIN GENES

ABC Proteins: from Bacteria to Man

Volumn , Issue , 2003, Pages 279-293

  Schüller, Christoph ^a   Bauer, Bettina E ^a   Kuchler, Karl ^a  

^a University and Biocenter of Vienna   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 14844282326     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-012352551-2/50015-9     Document Type: Chapter

References (86)

1. R. Allikmets, W.H. Raskind, A. Hutchinson, N.D. Schueck, M. Dean and D.M. Koeller (1999) Mutation of a putative mitochondrial iron transporter gene (ABC7) in X-linked sideroblastic anemia and ataxia (XLSA/A). Hum. Mol. Genet. 8 743-749.
2. A.C. Andrade, G. Del Sorbo, J.G. Van Nistelrooy and M.A. Waard (2000) The ABC transporter atrB from Aspergillus nidulans mediates resistance to all major classes of fungicides and some natural toxic compounds. Microbiology 146 1987-1997.
3. I. Balan, A.M. Alarco and M. Raymond (1997) The Candida albicans CDR3 gene codes for an opaque-phase ABC transporter. J. Bacteriol. 179 7210-7218.
4. E. Balzi, W. Chen, S. Ulaszewski, E. Capieaux and A. Goffeau (1987) The multidrug resistance gene PDR1 from Saccharomyces cerevisiae. J. Biol. Chem. 262 16871-16879.
5. B.E. Bauer, H. Wolfger and K. Kuchler (1999) Inventory and function of yeast ABC proteins: about sex, stress, pleiotropic drug and heavy metal resistance. Biochim. Biophys. Acta 1461 217-236.
6. C. Berkower, D. Loayza and S. Michaelis (1994) Metabolic instability and constitutive endocytosis of STE6, the a- factor transporter of Saccharomyces cerevisiae. Mol. Biol. Cell 5 1185-1198.
7. C. Berkower, D. Taglicht and S. Michaelis (1996) Functional and physical interactions between partial molecules of STE6, a yeast ATP-binding cassette protein. J. Biol. Chem. 271 22983-22989.
8. P.H. Bissinger and K. Kuchler (1994) Molecular cloning and expression of the Saccharomyces cerevisiae STS1 gene product. A yeast ABC transporter conferring mycotoxin resistance. J. Biol. Chem. 269 4180-4186.
9. P. Bossier, L. Fernandes, C. Vilela and C. Rodrigues-Pousada (1994) The yeast YKL741 gene situated on the left arm of chromosome XI codes for a homologue of the human ALD protein. Yeast 10 681-686.
10. B.L. Browne, V. McClendon and D.M. Bedwell (1996) Mutations within the first LSGGQ motif of Ste6p cause defects in a-factor transport and mating in Saccharomyces cerevisiae. J. Bacteriol. 178 1712-1719.
11. H.C. Causton, B. Ren, S.S. Koh, C.T. Harbison, E. Kanin, E.G. Jennings, T.I. Lee, H.L. True, E.S. Lander and R.A. Young (2001) Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell 12 323-337.
12. K. Chakraburtty (1999) Functional interaction of yeast elongation factor 3 with yeast ribosomes. Int. J. Biochem. Cell Biol. 31 163-173.
13. G. Chang and C.B. Roth (2001) Structure of MsbA from E. coli: a homolog of the multidrug resistance ATP-binding cassette (ABC) transporters. Science 293 1793-1800.
14. C.J. Chen, J.E. Chin, K. Ueda, D.P. Clark, I. Pastan, M.M. Gottesman and I.B. Roninson (1986) Internal duplication and homology with bacterial transport proteins in the mdr1 (P-glycoprotein) gene from multidrug-resistant human cells. Cell 47 381-389.
15. P.U. Christensen, J. Davey and O. Nielsen (1997) The Schizosaccharomyces pombe mam1 gene encodes an ABC transporter mediating secretion of M-factor. Mol. Gen. Genet. 255 226-236.
16. P.U. Christensen, K. Davis, O. Nielsen and J. Davey (1997) Abc1: a new ABC transporter from the fission yeast Schizosaccharomyces pombe. FEMS Microbiol. Lett. 147 97-102.
17. M. Corral-Debrinski, C. Blugeon and C. Jacq (2000) In yeast, the 3′ untranslated region or the presequence of ATM1 is required for the exclusive localization of its mRNA to the vicinity of mitochondria. Mol. Cell Biol. 20 7881-7892.
18. J.S. Cox, C.E. Shamu and P. Walter (1993) Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase. Cell 73 1197-1206.
19. Z. Cui, D. Hirata, E. Tsuchiya, H. Osada and T. Miyakawa (1996) The multidrug resistance-associated protein (MRP) subfamily (Yrs1/Yor1) of Saccharomyces cerevisiae is important for the tolerance to a broad range of organic anions. J. Biol. Chem. 271 14712-14716.
20. M. Dean and R. Allikmets (1995) Evolution of ATP-binding cassette transporter genes. Curr. Opin. Genet. Dev. 5 779-785.
21. A. Decottignies and A. Goffeau (1997) Complete inventory of the yeast ABC proteins. Nat. Genet. 15 137-145.
22. G. Del Sorbo, A.C. Andrade, J.G. Van Nistelrooy, J.A. Van Kan, E. Balzi and M.A. De Waard (1997) Multidrug resistance in Aspergillus nidulans involves novel ATP-binding cassette transporters. Mol. Gen. Genet. 254 417-426.
23. J. DeRisi, B. van den Hazel, P. Marc, E. Balzi, P. Brown, C. Jacq and A. Goffeau (2000) Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants. FEBS Lett. 470 156-160.
24. R. Egner, Y. Mahé, R. Pandjaitan, V. Huter, A. Lamprecht and K. Kuchler (1995) Membrane Protein Transport 2 57-96.
25. L. Elia and L. Marsh (1996) Role of the ABC transporter Ste6 in cell fusion during yeast conjugation. J. Cell Biol. 135 741-751.
26. R. Franz, S. Michel and J. Morschhauser (1998) A fourth gene from the Candida albicans CDR family of ABC transporters. Gene 220 91-98.
27. M. Garcia-Barrio, J. Dong, S. Ufano and A.G. Hinnebusch (2000) Association of GCN1-GCN20 regulatory complex with the N-terminus of elF2alpha kinase GCN2 is required for GCN2 activation. EMBO J. 19 1887-1899.
28. J. Gartner and D. Valle (1993) The 70kDa peroxisomal membrane protein: an ATP-binding cassette transporter protein involved in peroxisome biogenesis. Semin. Cell Biol. 4 45-52.
29. A.P. Gasch, P.T. Spellman, C.M. Kao, O. Carmel-Harel, M.B. Eisen, G. Storz, D. Botstein and P.O. Brown (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 11 4241-4257.
30. R.R. Gontarek, H. Li, K. Nurse and C.D. Prescott (1998) The N terminus of eukaryotic translation elongation factor 3 interacts with 18 S rRNA and 80 S ribosomes. J. Biol. Chem. 273 10249-10252.
31. P. Gros, J. Croop and D. Housman (1986) Mammalian multidrug resistance gene: complete cDNA sequence indicates strong homology to bacterial transport proteins. Cell 47 371-380.
32. C.F. Higgins (1992) ABC transporters: from microorganisms to man. Annu. Rev. Cell Biol. 8 67-113.
33. C.F. Higgins (1995) The ABC of channel regulation. Cell 82 693-696.
34. D. Hirata, K. Yano, K. Miyahara and T. Miyakawa (1994) Saccharomyces cerevisiae YDR1, which encodes a member of the ATP-binding cassette (ABC) superfamily, is required for multidrug resistance. Curr. Genet. 26 285-294.
35. A. Holzinger, S. Kammerer and A.A. Roscher (1997) Primary structure of human PMP69, a putative peroxisomal ABC-transporter. Biochem. Biophys. Res. Commun. 237 152-157.
36. A. Holzinger, P. Mayerhofer, J. Berger, P. Lichtner, S. Kammerer and A.A. Roscher (1999) Full length cDNA cloning, promoter sequence, and genomic organization of the human adrenoleukodystrophy related (ALDR) gene functionally redundant to the gene responsible for X-linked adrenoleukodystrophy. Biochem. Biophys. Res. Commun. 258 436-442.
37. T.R. Hughes, M.J. Marton, A.R. Jones, C.J. Roberts, R. Stoughton, C.D. Armour, et al. (2000) Functional discovery via a compendium of expression profiles. Cell 102 109-126.
38. S.A. Jelinsky, P. Estep, G.M. Church and L.D. Samson (2000) Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes. Mol. Cell. Biol. 20 8157-8167.
39. K. Kamijo, T. Kamijo, I. Ueno, T. Osumi and T. Hashimoto (1992) Nucleotide sequence of the human 70 kDa peroxisomal membrane protein: a member of ATP-binding cassette transporters. Biochim. Biophys. Acta 1129 323-327.
40. D.J. Katzmann, T.C. Hallström, M. Voet, W. Wysock, J. Golin, G. Vocckaert and W.S. Moye-Rowley (1995) Expression of an ATP-binding cassette transporter-encoding gene (YOR1) is required for oligomycin resistance in Saccharomyces cerevisiae. Mol. Cell. Biol. 15 6875-6883.
41. R. Kölling and C.P. Hollenberg (1994) The ABC-transporter Ste6 accumulates in the plasma membrane in a ubiquitinated form in endocytosis mutants. EMBO J. 13 3261-3271.
42. A. Kralli, S.P. Bohen and K.R. Yamamoto (1995) LEM1; and ATP-binding-cassette transporter, selectively modulates the biological potency of steroid hormones. Proc. Natl Acad. Sci. USA 92 4701-4705.
43. K. Kuchler (1993) Unusual routes of protein secretion: the easy way out. Trends Cell Biol. 3 421-426.
44. K. Kuchler and R. Egner (1997) Unusual protein secretion and translocation pathways in yeast: implication of ABC transporters. K. Kuchler, A. Rubartelli, B. Holland (Eds) Unusual Secretory Pathways: from Bacteria to Man Austin, TX: Landes Bioscience 49-85.
45. K. Kuchler, R.E. Sterne and J. Thorner (1989) Saccharomyces cerevisiae STE6 gene product: a novel pathway for protein export in eukaryotic cells. EMBO J. 8 3973-3984.
46. K. Kuchler, H.G. Dohlman and J. Thorner (1993) The a-factor transporter (STE6 gene product) and cell polarity in the yeast Saccharomyces cerevisiae. J. Cell Biol. 120 1203-1215.
47. C. Martinand, C. Montavon, T. Salehzada, M. Silhol, B. Lebleu and C. Bisbal (1999) RNase L inhibitor is induced during human immunodeficiency virus type 1 infection and down regulates the 2-5A/RNase L pathway in human T cells. J. Virol. 73 290-296.
48. M.J. Marton, C.R. Vazquez de Aldana, H. Qiu, K. Chakraburtty and A.G. Hinnebusch (1997) Evidence that GCN1 and GCN20, translational regulators of GCN4, function on elongating ribosomes in activation of elF2alpha kinase GCN2. Mol. Cell. Biol. 17 4474-4489.
49. T.C. Maurice, C.E. Mazzucco, C.S. Ramanathan, B.M. Ryan, G.A. Warr and J.W. Puziss (1998) A highly conserved intraspecies homolog of the Saccharomyces cerevisiae elongation factor-3 encoded by the HEF3 gene. Yeast 14 1105-1113.
50. J.P. McGrath and A. Varshavsky (1989) The yeast STE6 gene encodes a homologue of the mammalian multidrug resistance P-glycoprotein. Nature 340 400-404.
51. S. Michaelis (1993) STE6, the yeast a-factor transporter. Semin. Cell Biol. 4 17-27.
52. S. Michaelis and C. Berkower (1995) Sequence comparison of yeast ATP-binding cassette proteins. Cold Spring Harb. Symp. Quant. Biol. 60 291-307.
53. H. Miyazaki, Y. Miyazaki, A. Geber, T. Parkinson, C. Hitchcock, D.J. Falconer, D.J. Ward, K. Marsden and J.E. Bennett (1998) Fluconazole resistance associated with drug efflux and increased transcription of a drug transporter gene, PDH1, in Candida glabrata. Antimicrob. Agents Chemother. 42 1695-1701.
54. R. Nakaune, K. Adachi, O. Nawata, M. Tomiyama, K. Akutsu and T. Hibi (1998) A novel ATP-binding cassette transporter involved in multidrug resistance in the phytopathogenic fungus Penicillium digitatum. Appl. Environ. Microbiol. 64 3983-3988.
55. A. Ogawa, T. Hashida-Okado, M. Endo, H. Yoshioka, T. Tsuruo, K. Takesako and I. Kato (1998) Role of ABC transporters in aureobasidin A resistance. Antimicrob. Agents Chemother. 42 755-761.
56. D.F. Ortiz, M.V. St Pierre, A. Abdulmessih and I.M. Arias (1997) A yeast ATP-binding cassette-type protein mediating ATP-dependent bile acid transport. J. Biol. Chem. 272 15358-15365.
57. W. Pelzer, U. Muhlenhoff, K. Diekert, K. Siegmund, G. Kispal and R. Lill (2000) Mitochondrial Isa2p plays a crucial role in the maturation of cellular iron-sulfur proteins. FEBS Lett. 476 134-139.
58. P. Piper, Y. Mahé, S. Thompson, R. Pandjaitan, C. Holyoak, R. Egner, M. Mühlbauer, P. Coote and K. Kuchler (1998) The Pdr12 ABC transporter is required for the development of weak organic acid resistance in yeast. EMBO J. 17 4257-4265.
59. R. Prasad, P. De Wergifosse, A. Goffeau and E. Balzi (1995) Molecular cloning and characterization of a novel gene of Candida albicans, CDR1, conferring multiple resistance to drugs and antifungals. Curr. Genet. 27 320-329.
60. M. Raymond, P. Gros, M. Whiteway and D.Y. Thomas (1992) Functional complementation of yeast ste6 by a mammalian multidrug resistance mdr gene. Science 256 232-234.
61. M. Raymond, D. Dignard, A.M. Alarco, N. Mainville, B.B. Magee and D.Y. Thomas (1998) A Ste6p/P-glycoprotein homologue from the asexual yeast Candida albicans transports the a-factor mating pheromone in Saccharomyces cerevisiae. Mol. Microbiol. 27 587-598.
62. M.G. Sandbaken, J.A. Lupisella, B. DiDomenico and K. Chakraburtty (1990) Protein synthesis in yeast. Structural and functional analysis of the gene encoding elongation factor 3. J. Biol. Chem. 265 15838-15844.
63. D. Sanglard, F. Ischer, M. Monod and J. Bille (1997) Cloning of Candida albicans genes conferring resistance to azole antifungal agents: characterization of CDR2, a new multidrug ABC transporter gene. Microbiology 143 405-416.
64. A. Santoso, P. Chien, L.Z. Osherovich and J.S. Weissman (2000) Molecular basis of a yeast prion species barrier. Cell 100 277-288.
65. S. Sapperstein, C. Berkower and S. Michaelis (1994) Nucleotide sequence of the yeast STE14 gene, which encodes farnesylcysteine carboxyl methyltransferase, and demonstrates its essential role in a-factor export. Mol. Cell Biol. 14 143814-143849.
66. A.V. Sarthy, T. McGonigal, J.O. Capobianco, M. Schmidt, S.R. Green, C.M. Moehle and R.C. Goldman (1998) Identification and kinetic analysis of a functional homolog of elongation factor 3, YEF3 in Saccharomyces cerevisiae. Yeast 14 239-253.
67. J. Servos, E. Haase and M. Brendel (1993) Gene SNQ2 of Saccharomyces cerevisiae, which confers resistance to 4-nitroquinoline-N-oxide and other chemicals encodes a 169 kDa protein homologous to ATP-dependent permeases. Mol. Gen. Genet. 236 214-218.
68. N. Shani, A. Sapag, P.A. Watkins and D. Valle (1996) An S. cerevisiae peroxisomal transporter, orthologous to the human adrenoleukodystrophy protein, appears to be a heterodimer of two half ABC transporters: Pxa1p and Pxa2p. Ann. NY Acad. Sci. 804 770-772.
69. C. Sidrauski and P. Walter (1997) The transmembrane kinase Ire1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response. Cell 90 1031-1039.
70. E.E. Swartzman, M.N. Viswanathan and J. Thorner (1996) The PAL1 gene product is a peroxisomal ATP-binding cassette transporter in the yeast Saccharomyces cerevisiae. J. Cell Biol. 132 549-563.
71. M.S. Szczypka, J.A. Wemmie, W.S. Moye-Rowley and D.J. Thiele (1994) A yeast metal resistance protein similar to human cystic fibrosis transmembrane conductance regulator (CFTR) and multidrug resistance-associated protein. J. Biol. Chem. 269 22853-22857.
72. D. Taglicht and S. Michaelis (1998) Saccharomyces cerevisiae ABC proteins and their relevance to human health and disease. Methods Enzymol. 292 130-162.
73. M.B. Tobin, R.B. Peery and P.L. Skatrud (1997) Genes encoding multiple drug resistance-like proteins in Aspergillus fumigatus and Aspergillus flavus. Gene 200 11-23.
74. M.F. Tuite, C.R. Mundy and B.S. Cox (1981) Agents that cause a high frequency of genetic change from [psi+] to [psi−] in Saccharomyces cerevisiae. Genetics 98 691-711.
75. T.G. Turi and J.K. Rose (1995) Characterization of a novel Schizosaccharomyces pombe multidrug resistance transporter conferring brefeldin A resistance. Biochem. Biophys. Res. Commun. 213 410-418.
76. G.E. Tusnady, E. Bakos, A. Varadi and B. Sarkadi (1997) Membrane topology distinguishes a subfamily of the ATP-binding cassette (ABC) transporters. FEBS Lett. 402 1-3.
77. M. Urban, T. Bhargava and J.E. Hamer (1999) An ATP-driven efflux pump is a novel pathogenicity factor in rice blast disease. EMBO J. 18 512-521.
78. C.R. Vazquez de Aldana, M.J. Marton and A.G. Hinnebusch (1995) GCN20, a novel ATP binding cassette protein, and GCN1 reside in a complex that mediates activation of the elF-2 alpha kinase GCN2 in amino acid-starved cells. EMBO J. 14 3184-3199.
79. J.E. Walker, M. Saraste, M.J. Runswick and N.J. Gay (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1 945-951.
80. R.C. Wang, S.J. Seror, M. Blight, J.M. Pratt, J.K. Broome-Smith and I.B. Holland (1991) Analysis of the membrane organization of an Escherichia coli protein translocator, HlyB, a member of a large family of prokaryote and eukaryote surface transport proteins. J. Mol. Biol. 217(3), 441-454.
81. P.A. Watkins, J.F. Lu, L.T. Braiterman, S.J. Steinberg and K.D. Smith (2000) Disruption of a yeast very-long-chain acyl-CoA synthetase gene simulates the cellular phenotype of X-linked adrenoleukodystrophy. Cell Biochem. Biophys. 32 333-337.
82. H. Wolfger, Y. Mahé, A. Parle-McDermott, A. Delahodde and K. Kuchler (1997) The yeast ATP-binding cassette (ABC) protein genes PDR10 and PDR15 are novel targets for the Pdr1 and Pdr3, transcriptional regulators. FEBS Lett. 418 269-274.
83. H. Wolfger, Y.M. Mamnun and K. Kuchler (2001) Fungal ABC proteins: pleiotropic drug resistance, stress response and cellular detoxification. Res. Microbiol. 152 375-389.
84. J. Young and I.B. Holland (1999) ABC transporters: bacterial exporters-revisited five years on. Biochim. Biophys. Acta 1461 177-200.
85. L. Young, K. Leonhard, T. Tatsuta, J. Trowsdale and T. Langer (2001) Role of the ABC transporter Mdl1 in peptide export from mitochondria. Science 291 2135-2138.
86. D.S. Yuan (2000) Zinc-regulated genes in Saccharomyces cerevisiae revealed by transposon tagging. Genetics 156 45-58.