메뉴 건너뛰기




Volumn 20, Issue , 2005, Pages 1-11

Rapid evolution and diversification of mammalian α-defensins as revealed by comparative analysis of rodent and primate genes

Author keywords

Antimicrobial peptide; Comparative genomics; Defensin

Indexed keywords

ALPHA DEFENSIN;

EID: 14644435363     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00150.2004     Document Type: Article
Times cited : (143)

References (45)
  • 2
    • 0030027096 scopus 로고    scopus 로고
    • Human enteric defensin genes: Chromosomal map position and a model for possible evolutionary relationships
    • Bevins CL, Jones DE, Dutra A, Schaffzin J, and Muenke M. Human enteric defensin genes: chromosomal map position and a model for possible evolutionary relationships. Genomics 31: 95-106, 1996.
    • (1996) Genomics , vol.31 , pp. 95-106
    • Bevins, C.L.1    Jones, D.E.2    Dutra, A.3    Schaffzin, J.4    Muenke, M.5
  • 4
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C and Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol 268: 78-94, 1997.
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 5
    • 0032768795 scopus 로고    scopus 로고
    • Induction of a rat enteric defensin gene by hemorrhagic shock
    • Condon MR, Viera A, D'Alessio M, and Diamond G. Induction of a rat enteric defensin gene by hemorrhagic shock. Infect Immun 67: 4787-4793, 1999.
    • (1999) Infect Immun , vol.67 , pp. 4787-4793
    • Condon, M.R.1    Viera, A.2    D'Alessio, M.3    Diamond, G.4
  • 6
    • 0141799911 scopus 로고    scopus 로고
    • Defensins: Antimicrobial peptides of innate immunity
    • Ganz T. Defensins: antimicrobial peptides of innate immunity. Nat Rev Immunol 3: 710-720, 2003.
    • (2003) Nat Rev Immunol , vol.3 , pp. 710-720
    • Ganz, T.1
  • 8
    • 0032007854 scopus 로고    scopus 로고
    • Cationic peptides: A new source of antibiotics
    • Hancock RE and Lehrer R. Cationic peptides: a new source of antibiotics. Trends Biotechnol 16: 82-88, 1998.
    • (1998) Trends Biotechnol , vol.16 , pp. 82-88
    • Hancock, R.E.1    Lehrer, R.2
  • 9
    • 4444246183 scopus 로고    scopus 로고
    • Increased diversity of intestinal antimicrobial peptides by covalent dimer formation
    • Hornef MW, Putsep K, Karlsson J, Refai E, and Andersson M. Increased diversity of intestinal antimicrobial peptides by covalent dimer formation. Nat Immunol 5: 836-843, 2004.
    • (2004) Nat Immunol , vol.5 , pp. 836-843
    • Hornef, M.W.1    Putsep, K.2    Karlsson, J.3    Refai, E.4    Andersson, M.5
  • 10
    • 0033214579 scopus 로고    scopus 로고
    • Evolutionary diversification of the mammalian defensins
    • Hughes AL. Evolutionary diversification of the mammalian defensins. Cell Mol Life Sci 56: 94-103, 1999.
    • (1999) Cell Mol Life Sci , vol.56 , pp. 94-103
    • Hughes, A.L.1
  • 11
    • 0036945805 scopus 로고    scopus 로고
    • Natural selection and the diversification of vertebrate immune effectors
    • Hughes AL. Natural selection and the diversification of vertebrate immune effectors. Immunol Rev 190: 161-168, 2002.
    • (2002) Immunol Rev , vol.190 , pp. 161-168
    • Hughes, A.L.1
  • 12
    • 0030990203 scopus 로고    scopus 로고
    • Coordinated amino acid changes in the evolution of mammalian defensins
    • Hughes AL and Yeager M. Coordinated amino acid changes in the evolution of mammalian defensins. J Mol Evol 44: 675-682, 1997.
    • (1997) J Mol Evol , vol.44 , pp. 675-682
    • Hughes, A.L.1    Yeager, M.2
  • 13
    • 0028130174 scopus 로고
    • A family of defensin-like genes codes for diverse cysteine-rich peptides in mouse Paneth cells
    • Huttner KM and Ouellette AJ. A family of defensin-like genes codes for diverse cysteine-rich peptides in mouse Paneth cells. Genomics 24: 99-109, 1994.
    • (1994) Genomics , vol.24 , pp. 99-109
    • Huttner, K.M.1    Ouellette, A.J.2
  • 14
    • 0036226603 scopus 로고    scopus 로고
    • BLAT: The BLAST-like alignment tool
    • Kent WJ. BLAT: the BLAST-like alignment tool. Genome Res 12: 656-664, 2002.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 15
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar S, Tamura K, Jakobsen IB, and Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 16
    • 0036467390 scopus 로고    scopus 로고
    • Defensins of vertebrate animals
    • Lehrer RI and Ganz T. Defensins of vertebrate animals. Curr Opin Immunol 14: 96-102, 2002.
    • (2002) Curr Opin Immunol , vol.14 , pp. 96-102
    • Lehrer, R.I.1    Ganz, T.2
  • 17
    • 0032815762 scopus 로고    scopus 로고
    • A 450-kb contig of defensin genes on human chromosome 8p23
    • Linzmeier R, Ho CH, Hoang BV, and Ganz T. A 450-kb contig of defensin genes on human chromosome 8p23. Gene 233: 205-211, 1999.
    • (1999) Gene , vol.233 , pp. 205-211
    • Linzmeier, R.1    Ho, Ch.2    Hoang, B.V.3    Ganz, T.4
  • 19
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M and Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426, 1986.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 20
    • 1042302158 scopus 로고    scopus 로고
    • Evolution of primate theta-defensins: A serpentine path to a sweet tooth
    • Nguyen TX, Cole AM, and Lehrer RI. Evolution of primate theta-defensins: a serpentine path to a sweet tooth. Peptides 24: 1647-1654, 2003,
    • (2003) Peptides , vol.24 , pp. 1647-1654
    • Nguyen, T.X.1    Cole, A.M.2    Lehrer, R.I.3
  • 21
    • 1842453218 scopus 로고    scopus 로고
    • Defensin-mediated innate immunity in the small intestine
    • Ouellette AJ. Defensin-mediated innate immunity in the small intestine: Best Pract Res Clin Gastroenterol 18: 405-419, 2004.
    • (2004) Best Pract Res Clin Gastroenterol , vol.18 , pp. 405-419
    • Ouellette, A.J.1
  • 22
    • 0029819784 scopus 로고    scopus 로고
    • Paneth cell defensins: Endogenous peptide components of intestinal host defense
    • Ouellette AJ and Selsted ME. Paneth cell defensins: endogenous peptide components of intestinal host defense. FASEB J 10: 1280-1289, 1996.
    • (1996) FASEB J , vol.10 , pp. 1280-1289
    • Ouellette, A.J.1    Selsted, M.E.2
  • 23
    • 0032885169 scopus 로고    scopus 로고
    • Genome evolution and the evolution of exon-shuffling: A review
    • Patthy L. Genome evolution and the evolution of exon-shuffling: a review. Gene 238: 103-114, 1999.
    • (1999) Gene , vol.238 , pp. 103-114
    • Patthy, L.1
  • 24
    • 6344249131 scopus 로고    scopus 로고
    • Between-host evolution of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1: An approach based on phylogenetically independent comparisons
    • Piontkivska H and Hughes AL. Between-host evolution of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1: an approach based on phylogenetically independent comparisons. J Virol 78: 11758-11765, 2004.
    • (2004) J Virol , vol.78 , pp. 11758-11765
    • Piontkivska, H.1    Hughes, A.L.2
  • 25
    • 0034194257 scopus 로고    scopus 로고
    • Large-scale synthesis and functional elements for the antimicrobial activity of defensins
    • Raj PA, Antonyraj KJ, and Karunakaran T. Large-scale synthesis and functional elements for the antimicrobial activity of defensins. Biochem J 347: 633-641, 2000.
    • (2000) Biochem J , vol.347 , pp. 633-641
    • Raj, P.A.1    Antonyraj, K.J.2    Karunakaran, T.3
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425, 1987.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0037417311 scopus 로고    scopus 로고
    • Protection against enteric salmonellosis in transgenic mice expressing a human intestinal defensin
    • Salzman NH, Ghosh D, Huttner KM, Paterson Y, and Bevins CL. Protection against enteric salmonellosis in transgenic mice expressing a human intestinal defensin. Nature 422: 522-526, 2003.
    • (2003) Nature , vol.422 , pp. 522-526
    • Salzman, N.H.1    Ghosh, D.2    Huttner, K.M.3    Paterson, Y.4    Bevins, C.L.5
  • 28
    • 0037040913 scopus 로고    scopus 로고
    • The solution structures of the human beta-defensins lead to a better understanding of the potent bactericidal activity of HBD3 against Staphylococcus aureus
    • Schibli DJ, Hunter HN, Aseyev V, Starner TD, Wiencek JM, McCray PB Jr, Tack BF, and Vogel HJ. The solution structures of the human beta-defensins lead to a better understanding of the potent bactericidal activity of HBD3 against Staphylococcus aureus. J Biol Chem 277: 8279-8289, 2002.
    • (2002) J Biol Chem , vol.277 , pp. 8279-8289
    • Schibli, D.J.1    Hunter, H.N.2    Aseyev, V.3    Starner, T.D.4    Wiencek, J.M.5    McCray Jr., P.B.6    Tack, B.F.7    Vogel, H.J.8
  • 31
    • 85182716366 scopus 로고    scopus 로고
    • Duplication and selection in the evolution of primate beta-defensin genes
    • Semple CA, Rolfe M, and Dorin JR. Duplication and selection in the evolution of primate beta-defensin genes. Genome Biol 4: R31, 2003.
    • (2003) Genome Biol , vol.4
    • Semple, C.A.1    Rolfe, M.2    Dorin, J.R.3
  • 34
    • 0032725460 scopus 로고    scopus 로고
    • Isolation, characterization, cDNA cloning, and antimicrobial properties of two distinct subfamilies of alpha-defensins from rhesus macaque leukocytes
    • Tang YQ, Yuan J, Miller CJ, and Selsted ME. Isolation, characterization, cDNA cloning, and antimicrobial properties of two distinct subfamilies of alpha-defensins from rhesus macaque leukocytes. Infect Immun 67: 6139-6144, 1999.
    • (1999) Infect Immun , vol.67 , pp. 6139-6144
    • Tang, Y.Q.1    Yuan, J.2    Miller, C.J.3    Selsted, M.E.4
  • 35
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, and Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680, 1994.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 36
    • 0037407586 scopus 로고    scopus 로고
    • Retrocyclin, an antiretroviral theta-defensin, is a lectin
    • Wang W, Cole AM, Hong T, Waring AJ, and Lehrer RI. Retrocyclin, an antiretroviral theta-defensin, is a lectin. J Immunol 170: 4708-4716, 2003.
    • (2003) J Immunol , vol.170 , pp. 4708-4716
    • Wang, W.1    Cole, A.M.2    Hong, T.3    Waring, A.J.4    Lehrer, R.I.5
  • 39
    • 9144261231 scopus 로고    scopus 로고
    • A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: Implications for the origin and evolution of mammalian defensins
    • Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D, and Zhang G. A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins. BMC Genomics 5: 56, 2004.
    • (2004) BMC Genomics , vol.5 , pp. 56
    • Xiao, Y.1    Hughes, A.L.2    Ando, J.3    Matsuda, Y.4    Cheng, J.F.5    Skinner-Noble, D.6    Zhang, G.7
  • 40
    • 2542480000 scopus 로고    scopus 로고
    • Multiple roles of antimicrobial defensins, cathelicidins, and eosinophil-derived neurotoxin in host defense
    • Yang D, Biragyn A, Hoover DM, Lubkowski J, and Oppenheim JJ. Multiple roles of antimicrobial defensins, cathelicidins, and eosinophil-derived neurotoxin in host defense. Annu Rev Immunol 22: 181-215, 2004.
    • (2004) Annu Rev Immunol , vol.22 , pp. 181-215
    • Yang, D.1    Biragyn, A.2    Hoover, D.M.3    Lubkowski, J.4    Oppenheim, J.J.5
  • 41
    • 0035002015 scopus 로고    scopus 로고
    • Computational inference of homologous gene structures in the human genome
    • Yeh RF, Lim LP, and Burge CB. Computational inference of homologous gene structures in the human genome. Genome Res 11: 803-816, 2001.
    • (2001) Genome Res , vol.11 , pp. 803-816
    • Yeh, R.F.1    Lim, L.P.2    Burge, C.B.3
  • 42
    • 0028847478 scopus 로고
    • Rat neutrophil defensins. Precursor structures and expression during neutrophilic myelopoiesis
    • Yount NY, Wang MS, Yuan J, Banaiee N, Ouellette AJ, and Selsted ME. Rat neutrophil defensins. Precursor structures and expression during neutrophilic myelopoiesis. J Immunol 155: 4476-4484, 1995.
    • (1995) J Immunol , vol.155 , pp. 4476-4484
    • Yount, N.Y.1    Wang, M.S.2    Yuan, J.3    Banaiee, N.4    Ouellette, A.J.5    Selsted, M.E.6
  • 43
    • 0037165196 scopus 로고    scopus 로고
    • Antimicrobial peptides of multicellular organisms
    • Zasloff M. Antimicrobial peptides of multicellular organisms. Nature 415: 389-395, 2002.
    • (2002) Nature , vol.415 , pp. 389-395
    • Zasloff, M.1
  • 44
    • 0033588381 scopus 로고    scopus 로고
    • Cloning and characterization of the gene for a new epithelial beta-defensin. Genomic structure, chromosomal localization, and evidence for its constitutive expression
    • Zhang G, Hiraiwa H, Yasue H, Wu H, Ross CR, Troyer D, and Blecha F. Cloning and characterization of the gene for a new epithelial beta-defensin. Genomic structure, chromosomal localization, and evidence for its constitutive expression. J Biol Chem 274: 24031-24037, 1999.
    • (1999) J Biol Chem , vol.274 , pp. 24031-24037
    • Zhang, G.1    Hiraiwa, H.2    Yasue, H.3    Wu, H.4    Ross, C.R.5    Troyer, D.6    Blecha, F.7
  • 45
    • 0032489350 scopus 로고    scopus 로고
    • Molecular cloning and tissue expression of porcine beta-defensin-1
    • Zhang G, Wu H, Shi J, Ganz T, Ross CR, and Blecha F. Molecular cloning and tissue expression of porcine beta-defensin-1. FEBS Lett 424: 37-40, 1998.
    • (1998) FEBS Lett , vol.424 , pp. 37-40
    • Zhang, G.1    Wu, H.2    Shi, J.3    Ganz, T.4    Ross, C.R.5    Blecha, F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.