메뉴 건너뛰기




Volumn 4, Issue 5, 2003, Pages

Duplication and selection in the evolution of primate β-defensin genes

Author keywords

Additional Data File; Bacterial Artificial Chromosome; Bacterial Artificial Chromosome Sequence; Nonsynonymous Substitution; Olive Baboon

Indexed keywords


EID: 85182716366     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2003-4-5-r31     Document Type: Article
Times cited : (132)

References (46)
  • 1
    • 0030949875 scopus 로고    scopus 로고
    • Human beta-defensin-1 is a salt-sensitive antibiotic in lung that is inactivated in cystic fibrosis
    • PID: 9038346, COI: 1:CAS:528:DyaK2sXhtlOjurk%3D
    • Goldman MJ, Anderson GM, Stolzenberg ED, Kari UP, Zasloff M, Wilson JM: Human beta-defensin-1 is a salt-sensitive antibiotic in lung that is inactivated in cystic fibrosis. Cell. 1997, 88: 553-560. DOI: 10.1016/S0092-8674(00)81895-4
    • (1997) Cell , vol.88 , pp. 553-560
    • Goldman, M.J.1    Anderson, G.M.2    Stolzenberg, E.D.3    Kari, U.P.4    Zasloff, M.5    Wilson, J.M.6
  • 2
    • 0038634160 scopus 로고    scopus 로고
    • Human β-defensin-2
    • PID: 10404637, COI: 1:CAS:528:DyaK1MXkt1Cjsrc%3D
    • Schroder JM, Harder J: Human β-defensin-2. Int J Biochem Cell Biol. 1999, 31: 645-651. 10.1016/S1357-2725(99)00013-8. DOI: 10.1016/S1357-2725(99)00013-8
    • (1999) Int J Biochem Cell Biol , vol.31 , pp. 645-651
    • Schroder, J.M.1    Harder, J.2
  • 3
    • 0036467390 scopus 로고    scopus 로고
    • Defensins of vertebrate animals
    • PID: 11790538, COI: 1:CAS:528:DC%2BD38XktFKjsw%3D%3D
    • Lehrer RI, Ganz T: Defensins of vertebrate animals. Curr Opin Immunol. 2002, 14: 96-102. 10.1016/S0952-7915(01)00303-X. DOI: 10.1016/S0952-7915(01)00303-X
    • (2002) Curr Opin Immunol , vol.14 , pp. 96-102
    • Lehrer, R.I.1    Ganz, T.2
  • 5
    • 0032734313 scopus 로고    scopus 로고
    • Expression and regulation of the human beta-defensins DEFB1 and DEFB4in intestinal epithelium
    • PID: 10586069
    • O'Neil DA, Porter EM, Elewaut D, Anderson GM, Eckmann L, Ganz T, Kagnoff MF: Expression and regulation of the human beta-defensins DEFB1 and DEFB4 in intestinal epithelium. J Immunol. 1999, 163: 6718-6724.
    • (1999) J Immunol , vol.163 , pp. 6718-6724
    • O'Neil, D.A.1    Porter, E.M.2    Elewaut, D.3    Anderson, G.M.4    Eckmann, L.5    Ganz, T.6    Kagnoff, M.F.7
  • 6
    • 0033964050 scopus 로고    scopus 로고
    • Evolution of vertebrate immunoglobulin variable gene segments
    • PID: 10793480, COI: 1:CAS:528:DC%2BD3cXisVCnu7w%3D
    • Ota T, Sitnikova T, Nei M: Evolution of vertebrate immunoglobulin variable gene segments. Curr Top Microbiol Immunol. 2000, 248: 221-245.
    • (2000) Curr Top Microbiol Immunol , vol.248 , pp. 221-245
    • Ota, T.1    Sitnikova, T.2    Nei, M.3
  • 7
    • 0032426345 scopus 로고    scopus 로고
    • Natural selection at major histocompatibility complex loci of vertebrates
    • PID: 9928486, COI: 1:CAS:528:DyaK1MXjvFWltQ%3D%3D
    • Hughes AL, Yeager M: Natural selection at major histocompatibility complex loci of vertebrates. Annu Rev Genet. 1998, 32: 415-435. 10.1146/annurev.genet.32.1.415. DOI: 10.1146/annurev.genet.32.1.415
    • (1998) Annu Rev Genet , vol.32 , pp. 415-435
    • Hughes, A.L.1    Yeager, M.2
  • 8
    • 0030990203 scopus 로고    scopus 로고
    • Coordinated amino acid changes in the evolution of mammalian defensins
    • PID: 9169560, COI: 1:CAS:528:DyaK2sXjslKjurs%3D
    • Hughes AL, Yeager M: Coordinated amino acid changes in the evolution of mammalian defensins. J Mol Evol. 1997, 44: 675-682. DOI: 10.1007/PL00006191
    • (1997) J Mol Evol , vol.44 , pp. 675-682
    • Hughes, A.L.1    Yeager, M.2
  • 9
    • 0033214579 scopus 로고    scopus 로고
    • Evolutionary diversification of the mammalian defensins
    • PID: 11213266, COI: 1:CAS:528:DyaK1MXmslCmsb4%3D
    • Hughes AL: Evolutionary diversification of the mammalian defensins. Cell Mol Life Sci. 1999, 56: 94-103. 10.1007/s000180050010. DOI: 10.1007/s000180050010
    • (1999) Cell Mol Life Sci , vol.56 , pp. 94-103
    • Hughes, A.L.1
  • 10
    • 0036277312 scopus 로고    scopus 로고
    • Roles of diversifying selection and coordinated evolution in the evolution of amphibian antimicrobial peptides
    • PID: 12032242, COI: 1:CAS:528:DC%2BD38Xks1Ojtbw%3D
    • Duda TF, Vanhoye D, Nicolas P: Roles of diversifying selection and coordinated evolution in the evolution of amphibian antimicrobial peptides. Mol Biol Evol. 2002, 19: 858-864. DOI: 10.1093/oxfordjournals.molbev.a004143
    • (2002) Mol Biol Evol , vol.19 , pp. 858-864
    • Duda, T.F.1    Vanhoye, D.2    Nicolas, P.3
  • 11
    • 0036193191 scopus 로고    scopus 로고
    • Beta-defensin 1 gene variability among non-human primates
    • PID: 11862391, COI: 1:CAS:528:DC%2BD38XhsFKlu70%3D
    • Del Pero M, Boniotto M, Zuccon D, Cervella P, Spano A, Amoroso A, Crovella S: Beta-defensin 1 gene variability among non-human primates. Immunogenetics. 2002, 53: 907-913. 10.1007/s00251-001-0412-x. DOI: 10.1007/s00251-001-0412-x
    • (2002) Immunogenetics , vol.53 , pp. 907-913
    • Del Pero, M.1    Boniotto, M.2    Zuccon, D.3    Cervella, P.4    Spano, A.5    Amoroso, A.6    Crovella, S.7
  • 12
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • PID: 9254694, COI: 1:CAS:528:DyaK2sXlvFyhu7w%3D
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389. DOI: 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 13
    • 84884789168 scopus 로고    scopus 로고
    • Washington University in St. Louis
    • Genome Sequencing Center, Washington University in St. Louis. [http://genome.wustl.edu]
    • Genome Sequencing Center
  • 14
    • 85182631498 scopus 로고    scopus 로고
    • RepeatMasker. [http://ftp.genome.washington.edu/RM/RepeatMasker.html]
  • 15
    • 0342804468 scopus 로고    scopus 로고
    • Multiple promoter and splicing mRNA variants of the epididymis-specific gene EP2
    • PID: 10819450, COI: 1:CAS:528:DC%2BD3cXjvVenurg%3D
    • Frohlich O, Po C, Murphy T, Young LG: Multiple promoter and splicing mRNA variants of the epididymis-specific gene EP2. J Androl. 2000, 21: 421-430.
    • (2000) J Androl , vol.21 , pp. 421-430
    • Frohlich, O.1    Po, C.2    Murphy, T.3    Young, L.G.4
  • 18
    • 0037157787 scopus 로고    scopus 로고
    • Genotype-phenotype correlation in cystic fibrosis: The role of modifier genes
    • PID: 12124743
    • Salvatore F, Scudiero O, Castaldo G: Genotype-phenotype correlation in cystic fibrosis: The role of modifier genes. Am J Med Genet. 2002, 111: 88-95. 10.1002/ajmg.10461. DOI: 10.1002/ajmg.10461
    • (2002) Am J Med Genet , vol.111 , pp. 88-95
    • Salvatore, F.1    Scudiero, O.2    Castaldo, G.3
  • 19
    • 0029097115 scopus 로고
    • Structure, function, and membrane integration of defensins
    • PID: 8528769, COI: 1:CAS:528:DyaK2MXotF2lsLc%3D
    • White SH, Wimley WC, Selsted ME: Structure, function, and membrane integration of defensins. Curr Opin Struct Biol. 1995, 5: 521-527. 10.1016/0959-440X(95)80038-7. DOI: 10.1016/0959-440X(95)80038-7
    • (1995) Curr Opin Struct Biol , vol.5 , pp. 521-527
    • White, S.H.1    Wimley, W.C.2    Selsted, M.E.3
  • 20
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • PID: 3444411, COI: 1:CAS:528:DyaL28Xmt1aisbs%3D
    • Nei M, Gojobori T: Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol. 1986, 3: 418-426.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 21
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • PID: 9520431, COI: 1:CAS:528:DyaK1cXitlKjtrc%3D
    • Zhang J, Rosenberg HF, Nei M: Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc Natl Acad Sci USA. 1998, 95: 3708-3713. 10.1073/pnas.95.7.3708. DOI: 10.1073/pnas.95.7.3708
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3
  • 23
    • 0033921902 scopus 로고    scopus 로고
    • Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
    • PID: 10654260, COI: 1:CAS:528:DC%2BD3cXotFSmtA%3D%3D
    • Zhang J: Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J Mol Evol. 2000, 50: 56-68.
    • (2000) J Mol Evol , vol.50 , pp. 56-68
    • Zhang, J.1
  • 24
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • PID: 9367129, COI: 1:CAS:528:DyaK2sXntlGnu7s%3D
    • Yang Z: PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 1997, 13: 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 25
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • PID: 12032247, COI: 1:CAS:528:DC%2BD38Xks1Ojtbk%3D
    • Yang Z, Nielsen R: Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol. 2002, 19: 908-917. DOI: 10.1093/oxfordjournals.molbev.a004148
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 27
    • 0036021443 scopus 로고    scopus 로고
    • Identification and characterisation of a novel murine β-defensin related gene
    • PID: 12226710, COI: 1:CAS:528:DC%2BD38XmslGmu78%3D
    • Morrison G, Rofle M, Kilanowski F, Cross S, Dorin JR: Identification and characterisation of a novel murine β-defensin related gene. Mamm Genome. 2002, 13: 445-451. 10.1007/s00335-002-3014-5. DOI: 10.1007/s00335-002-3014-5
    • (2002) Mamm Genome , vol.13 , pp. 445-451
    • Morrison, G.1    Rofle, M.2    Kilanowski, F.3    Cross, S.4    Dorin, J.R.5
  • 28
    • 0036297453 scopus 로고    scopus 로고
    • Structural and functional characterization of hBD-1(Ser35), a peptide deduced from a DEFB1polymorphism
    • PID: 12054642, COI: 1:CAS:528:DC%2BD38XksVGhsL4%3D
    • Circo B, Skerlavaj B, Gennaro R, Amoroso A, Zanetti M: Structural and functional characterization of hBD-1(Ser35), a peptide deduced from a DEFB1 polymorphism. Biochem Biophys Res Commun. 2002, 293: 586-592. 10.1016/S0006-291X(02)00267-X. DOI: 10.1016/S0006-291X(02)00267-X
    • (2002) Biochem Biophys Res Commun , vol.293 , pp. 586-592
    • Circo, B.1    Skerlavaj, B.2    Gennaro, R.3    Amoroso, A.4    Zanetti, M.5
  • 29
    • 0037040913 scopus 로고    scopus 로고
    • The solution structures of the human beta-defensins lead to a better understanding of the potent bactericidal activity of HBD3 against Staphylococcus aureus
    • PID: 11741980, COI: 1:CAS:528:DC%2BD38XitFymt78%3D
    • Schibli DJ, Hunter HN, Aseyev V, Starner TD, Wiencek JM, McCray PB, Tack BF, Vogel HJ: The solution structures of the human beta-defensins lead to a better understanding of the potent bactericidal activity of HBD3 against Staphylococcus aureus. J Biol Chem. 2002, 277: 8279-8289. 10.1074/jbc.M108830200. DOI: 10.1074/jbc.M108830200
    • (2002) J Biol Chem , vol.277 , pp. 8279-8289
    • Schibli, D.J.1    Hunter, H.N.2    Aseyev, V.3    Starner, T.D.4    Wiencek, J.M.5    McCray, P.B.6    Tack, B.F.7    Vogel, H.J.8
  • 30
    • 0033569408 scopus 로고    scopus 로고
    • Beta-defensins: linking innate and adaptive immunity through dendritic and T cell CCR6
    • PID: 10521347, COI: 1:CAS:528:DyaK1MXmvVOhurc%3D
    • Yang D, Chertov O, Bykovskaia SN, Chen Q, Buffo MJ, Shogan J, Anderson M, Schroder JM, Wang JM, Howard OM, et al: Beta-defensins: linking innate and adaptive immunity through dendritic and T cell CCR6. Science. 1999, 286: 525-528. 10.1126/science.286.5439.525. DOI: 10.1126/science.286.5439.525
    • (1999) Science , vol.286 , pp. 525-528
    • Yang, D.1    Chertov, O.2    Bykovskaia, S.N.3    Chen, Q.4    Buffo, M.J.5    Shogan, J.6    Anderson, M.7    Schroder, J.M.8    Wang, J.M.9    Howard, O.M.10
  • 32
    • 0037235102 scopus 로고    scopus 로고
    • Expression of antimicrobial defensins in the male reproductive tract of rats, mice, and humans
    • PID: 12493700, COI: 1:CAS:528:DC%2BD3sXjtV2i
    • Com E, Bourgeon F, Evrard B, Ganz T, Colleu D, Jegou B, Pineau C: Expression of antimicrobial defensins in the male reproductive tract of rats, mice, and humans. Biol Reprod. 2003, 68: 95-104. DOI: 10.1095/biolreprod.102.005389
    • (2003) Biol Reprod , vol.68 , pp. 95-104
    • Com, E.1    Bourgeon, F.2    Evrard, B.3    Ganz, T.4    Colleu, D.5    Jegou, B.6    Pineau, C.7
  • 33
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • PID: 9918945, COI: 1:CAS:528:DyaK1MXktlCmtQ%3D%3D
    • Eddy SR: Profile hidden Markov models. Bioinformatics. 1998, 14: 755-763. 10.1093/bioinformatics/14.9.755. DOI: 10.1093/bioinformatics/14.9.755
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 34
    • 0029976603 scopus 로고    scopus 로고
    • Using CLUSTALW for multiple sequence alignments
    • PID: 8743695, COI: 1:CAS:528:DyaK28Xltl2nt7w%3D
    • Higgins DG, Thompson JD, Gibson TJ: Using CLUSTALW for multiple sequence alignments. Methods Enzymol. 1996, 266: 383-402. DOI: 10.1016/S0076-6879(96)66024-8
    • (1996) Methods Enzymol , vol.266 , pp. 383-402
    • Higgins, D.G.1    Thompson, J.D.2    Gibson, T.J.3
  • 35
    • 85182691588 scopus 로고    scopus 로고
    • WISE2
    • WISE2. [http://www.sanger.ac.uk/Software/Wise2]
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • PID: 3447015, COI: 1:STN:280:DyaL1c7ovFSjsA%3D%3D
    • Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987, 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HNM, (ed), Academic Press, New York
    • Jukes TH, Cantor CR: Evolution of protein molecules. Mammalian Protein Metabolism. Edited by: Munro HNM. 1969, New York: Academic Press, 21-132. DOI: 10.1016/B978-1-4832-3211-9.50009-7
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 38
    • 0031306932 scopus 로고    scopus 로고
    • Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes
    • PID: 9402743, COI: 1:CAS:528:DyaK2sXnvVGnt78%3D
    • Zhang J, Kumar S, Nei M: Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Mol Biol Evol. 1997, 14: 1335-1338. DOI: 10.1093/oxfordjournals.molbev.a025743
    • (1997) Mol Biol Evol , vol.14 , pp. 1335-1338
    • Zhang, J.1    Kumar, S.2    Nei, M.3
  • 39
    • 0036272936 scopus 로고    scopus 로고
    • Accuracy and power of bayes prediction of amino acid sites under positive selection
    • PID: 12032251, COI: 1:CAS:528:DC%2BD38Xks1Ojur8%3D
    • Anisimova M, Bielawski JP, Yang Z: Accuracy and power of bayes prediction of amino acid sites under positive selection. Mol Biol Evol. 2002, 19: 950-958. DOI: 10.1093/oxfordjournals.molbev.a004152
    • (2002) Mol Biol Evol , vol.19 , pp. 950-958
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 40
    • 0032945593 scopus 로고    scopus 로고
    • DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment
    • PID: 10222408, COI: 1:CAS:528:DyaK1MXjs1artrc%3D
    • Morgenstern B: DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics. 1999, 15: 211-218. 10.1093/bioinformatics/15.3.211. DOI: 10.1093/bioinformatics/15.3.211
    • (1999) Bioinformatics , vol.15 , pp. 211-218
    • Morgenstern, B.1
  • 41
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • PID: 7463489, COI: 1:CAS:528:DyaL3MXmtFSktg%3D%3D
    • Kimura M: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980, 16: 111-120. DOI: 10.1007/BF01731581
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 42
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: molecular evolutionary genetics analysis software
    • PID: 11751241, COI: 1:CAS:528:DC%2BD38XmtVCktQ%3D%3D
    • Kumar S, Tamura K, Jakobsen IB, Nei M: MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 2001, 17: 1244-1245. 10.1093/bioinformatics/17.12.1244. DOI: 10.1093/bioinformatics/17.12.1244
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 43
    • 0025147562 scopus 로고
    • Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules
    • PID: 2283951, COI: 1:STN:280:DyaK3M7jtlamuw%3D%3D
    • Hughes AL, Ota T, Nei M: Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. Mol Biol Evol. 1990, 7: 515-524.
    • (1990) Mol Biol Evol , vol.7 , pp. 515-524
    • Hughes, A.L.1    Ota, T.2    Nei, M.3
  • 44
    • 0018415510 scopus 로고
    • Two types of amino acid substitutions in protein evolution
    • PID: 439147, COI: 1:CAS:528:DyaE1MXhvVWrtLk%3D
    • Miyata T, Miyazawa S, Yasunaga T: Two types of amino acid substitutions in protein evolution. J Mol Evol. 1979, 12: 219-236. DOI: 10.1007/BF01732340
    • (1979) J Mol Evol , vol.12 , pp. 219-236
    • Miyata, T.1    Miyazawa, S.2    Yasunaga, T.3
  • 45
    • 85182712936 scopus 로고    scopus 로고
    • Primer3
    • Primer3. [http://www-genome.wi.mit.edu/genome_software/other/primer3.html]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.