-
1
-
-
4344705370
-
Solution structure of an RNA stem-loop derived from the 3′ conserved region of eel LINE UnaL2
-
Baba, S., M. Kajikawa, N. Okada, and G. Kawai. 2004. Solution structure of an RNA stem-loop derived from the 3′ conserved region of eel LINE UnaL2. RNA 10:1380-1387.
-
(2004)
RNA
, vol.10
, pp. 1380-1387
-
-
Baba, S.1
Kajikawa, M.2
Okada, N.3
Kawai, G.4
-
2
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
Brouha, B., B. Brouha, J. Schustak, R. M. Badge, S. Lutz-Prigge, A. H. Farley, J. V. Moran, and H. H. Kazazian. 2003. Hot L1s account for the bulk of retrotransposition in the human population. Proc. Natl. Acad. Sci. USA 100:5280-5285.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Brouha, B.2
Schustak, J.3
Badge, R.M.4
Lutz-Prigge, S.5
Farley, A.H.6
Moran, J.V.7
Kazazian, H.H.8
-
3
-
-
0033559056
-
Analysis of the promoter from an expanding mouse retrotransposon subfamily
-
DeBerardinis, R. J., and H. H. Kazazian. 1999. Analysis of the promoter from an expanding mouse retrotransposon subfamily. Genomics 56:317-323.
-
(1999)
Genomics
, vol.56
, pp. 317-323
-
-
DeBerardinis, R.J.1
Kazazian, H.H.2
-
4
-
-
14544288084
-
-
DeLano, W. L. 2002. The PyMOL Molecular Graphics System on the World Wide Web http://www.pymol.org.
-
(2002)
-
-
DeLano, W.L.1
-
5
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux, M., C. Esnault, and T. Heidmann. 2003. LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 35:41-48.
-
(2003)
Nat. Genet.
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
6
-
-
0030995360
-
A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates
-
Drew, A. C., and P. J. Brindley. 1997. A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates. Mol. Biol. Evol. 14:602-610.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 602-610
-
-
Drew, A.C.1
Brindley, P.J.2
-
7
-
-
0022480924
-
Total DNA transcription in vitro: A procedure to detect highly repetitive and transcribable sequences with tRNA-like structures
-
Endoh, H., and N. Okada. 1986. Total DNA transcription in vitro: a procedure to detect highly repetitive and transcribable sequences with tRNA-like structures. Proc. Natl. Acad. Sci. USA 83:251-255.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 251-255
-
-
Endoh, H.1
Okada, N.2
-
8
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
Esnault, C., J. Maestre, and T. Heidmann. 2000. Human LINE retrotransposons generate processed pseudogenes. Nat. Genet. 24:363-367.
-
(2000)
Nat. Genet.
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
9
-
-
0026494391
-
A non-LTR retrotransposon from the Hawaiian Drosophila: The LOA element
-
Felger, I., and J. A. Hunt. 1992. A non-LTR retrotransposon from the Hawaiian Drosophila: the LOA element. Genetica 85: 119-130.
-
(1992)
Genetica
, vol.85
, pp. 119-130
-
-
Felger, I.1
Hunt, J.A.2
-
10
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng, Q., J. V. Moran, H. H. Kazazian, and J. D. Boeke. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87:905-916.
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian, H.H.3
Boeke, J.D.4
-
11
-
-
0032606140
-
CAFASP-1: Critical Assessment of Fully Automated Structure Prediction methods
-
Fischer, D., C. Barret, K. Bryson et al. (13 co-authers) 1999. CAFASP-1: Critical Assessment of Fully Automated Structure Prediction methods. Proteins 3(Suppl):209-217.
-
(1999)
Proteins
, vol.3
, Issue.SUPPL.
, pp. 209-217
-
-
Fischer, D.1
Barret, C.2
Bryson, K.3
-
12
-
-
0033017956
-
CORE-SINEs: Eukaryotic short interspersed retroposing elements with common sequence motifs
-
Gilbert, N., and D. Labuda. 1999. CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs. Proc. Natl. Acad. Sci. USA 96:2869-2874.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2869-2874
-
-
Gilbert, N.1
Labuda, D.2
-
13
-
-
0037047355
-
Genomic deletions created upon LINE-1 retrotransposition
-
Gilbert, N., S. Lutz-Prigge, and J. V. Moran. 2002. Genomic deletions created upon LINE-1 retrotransposition. Cell 110:315-325.
-
(2002)
Cell
, vol.110
, pp. 315-325
-
-
Gilbert, N.1
Lutz-Prigge, S.2
Moran, J.V.3
-
14
-
-
0030870342
-
Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon
-
Hohjoh, H., and M. F. Singer. 1997. Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon. EMBO J. 16:6034-6043.
-
(1997)
EMBO J.
, vol.16
, pp. 6034-6043
-
-
Hohjoh, H.1
Singer, M.F.2
-
15
-
-
0030731154
-
Determination of the entire sequence of turtle CR1: The first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif
-
Kajikawa, M., K. Ohshima, and N. Okada. 1997. Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif. Mol. Biol. Evol. 14:1206-1217.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1206-1217
-
-
Kajikawa, M.1
Ohshima, K.2
Okada, N.3
-
16
-
-
0036849412
-
LINEs mobilize SINEs in the eel through a shared 3′ sequence
-
Kajikawa, M., and N. Okada. 2002. LINEs mobilize SINEs in the eel through a shared 3′ sequence. Cell 111:433-444.
-
(2002)
Cell
, vol.111
, pp. 433-444
-
-
Kajikawa, M.1
Okada, N.2
-
17
-
-
14544303954
-
CR1-2_DR is a CR1-like non-LTR retrotransposon - A consensus
-
Kapitonov, V. V. 2002. CR1-2_DR is a CR1-like non-LTR retrotransposon - a consensus. Repbase Rep. 2:7.
-
(2002)
Repbase Rep.
, vol.2
, pp. 7
-
-
Kapitonov, V.V.1
-
18
-
-
14544292768
-
CR1-1_DR is a CR1-like non-LTR retrotransposon - A consensus
-
Kapitonov, V. V., and J. Jurka. 2002a. CR1-1_DR is a CR1-like non-LTR retrotransposon - a consensus. Repbase Rep. 2:6.
-
(2002)
Repbase Rep.
, vol.2
, pp. 6
-
-
Kapitonov, V.V.1
Jurka, J.2
-
19
-
-
14544301305
-
CR1-3_DR is a CR1-like non-LTR retrotransposon - A consensus
-
Kapitonov, V. V., and J. Jurka. 2002b. CR1-3_DR is a CR1-like non-LTR retrotransposon - a consensus. Repbase Rep. 2:8.
-
(2002)
Repbase Rep.
, vol.2
, pp. 8
-
-
Kapitonov, V.V.1
Jurka, J.2
-
20
-
-
14544292768
-
CR1-4_DR is a CR1-like non-LTR retrotransposon - A consensus
-
Kapitonov, V. V., and J. Jurka. 2002c. CR1-4_DR is a CR1-like non-LTR retrotransposon - a consensus. Repbase Rep. 2:6.
-
(2002)
Repbase Rep.
, vol.2
, pp. 6
-
-
Kapitonov, V.V.1
Jurka, J.2
-
21
-
-
14544303487
-
SINES-1 is a SINE retrotransposon - A consensus
-
Kapitonov, V. V., and J. Jurka. 2002d. SINES-1 is a SINE retrotransposon - a consensus. Repbase Rep. 2:22.
-
(2002)
Repbase Rep.
, vol.2
, pp. 22
-
-
Kapitonov, V.V.1
Jurka, J.2
-
22
-
-
0037225253
-
The esterase and PHD domains in CR1-like non-LTR retrotransposons
-
Kapitonov, V. V., and J. Jurka. 2003. The esterase and PHD domains in CR1-like non-LTR retrotransposons. Mol. Biol. Evol. 20:38-46.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 38-46
-
-
Kapitonov, V.V.1
Jurka, J.2
-
23
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian, H. H. 2004. Mobile elements: drivers of genome evolution. Science 303:1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian, H.H.1
-
24
-
-
0026088772
-
Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution
-
Kido, Y., M. Aono, T. Yamaki, K. Matsumoto, S. Murata, M. Saneyoshi, and N. Okada. 1991. Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc. Natl. Acad. Sci. USA 94:2326-2330.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2326-2330
-
-
Kido, Y.1
Aono, M.2
Yamaki, T.3
Matsumoto, K.4
Murata, S.5
Saneyoshi, M.6
Okada, N.7
-
25
-
-
0030961149
-
In vitro properties of the first ORF protein from mouse LINE-1 support its role in ribonucleoprotein particle formation during retrotransposition
-
Kolosha V. O., and S. L. Martin. 1997. In vitro properties of the first ORF protein from mouse LINE-1 support its role in ribonucleoprotein particle formation during retrotransposition. Proc. Natl. Acad. Sci. USA 88:10155-10160.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 10155-10160
-
-
Kolosha, V.O.1
Martin, S.L.2
-
26
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S., L. M. Linton, B. Birren et al. (256 co-authers). 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
27
-
-
0035207756
-
Evolutionary dynamics in a novel L2 clade of non-LTR retrotransposons in Deuterostomia
-
Lovsin, N., F. Gubensek, and D. Kordis. 2001. Evolutionary dynamics in a novel L2 clade of non-LTR retrotransposons in Deuterostomia. Mol. Biol. Evol. 18:2213-2224.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 2213-2224
-
-
Lovsin, N.1
Gubensek, F.2
Kordis, D.3
-
28
-
-
0029058441
-
RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element
-
Luan, D. D., and T. H. Eickbush. 1995. RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element. Mol. Cell. Biol. 15:3882-3891.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 3882-3891
-
-
Luan, D.D.1
Eickbush, T.H.2
-
29
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan, D. D., M. H. Korman, J. L. Jakubczak, and T. H. Eickbush. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
30
-
-
0032976398
-
The age and evolution of non-LTR retrotransposable elements
-
Malik, H. S., W. D. Burke, and T. H. Eickbush. 1999. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16:793-805.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 793-805
-
-
Malik, H.S.1
Burke, W.D.2
Eickbush, T.H.3
-
31
-
-
0035163939
-
Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
-
Martin S. L., and F. D. Bushman. 2001. Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol. Cell. Biol. 21:467-475.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 467-475
-
-
Martin, S.L.1
Bushman, F.D.2
-
32
-
-
0031014702
-
Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element
-
Mathews, D. H., A. R. Banerjee, D. D. Luan, T. H. Eickbush, and D. H. Turner. 1997. Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA 3:1-16.
-
(1997)
RNA
, vol.3
, pp. 1-16
-
-
Mathews, D.H.1
Banerjee, A.R.2
Luan, D.D.3
Eickbush, T.H.4
Turner, D.H.5
-
33
-
-
0034719372
-
DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination
-
Mol, C. D., T. Izumi, S. Mitra, and J. A. Tainer. 2000. DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]. Nature 403:451-456.
-
(2000)
Nature
, vol.403
, pp. 451-456
-
-
Mol, C.D.1
Izumi, T.2
Mitra, S.3
Tainer, J.A.4
-
35
-
-
85158032394
-
Mammalian LINE-1 retrotransposons and related elements
-
N. L. Craig, R. Craigie, M. Gellert, and A. M. Lambowitz, eds. ASM Press, Washington, D.C.
-
Moran, J. V., and N. Gilbert. 2002. Mammalian LINE-1 retrotransposons and related elements. Pp. 836-869 in N. L. Craig, R. Craigie, M. Gellert, and A. M. Lambowitz, eds. Mobile DNA II. ASM Press, Washington, D.C.
-
(2002)
Mobile DNA II
, pp. 836-869
-
-
Moran, J.V.1
Gilbert, N.2
-
36
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran, J. V., S. E. Holmes, T. P. Naas, R. J. DeBerardinis, J. D. Boeke, and H. H. Kazazian. 1996. High frequency retrotransposition in cultured mammalian cells. Cell 87:917-927.
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
Kazazian, H.H.6
-
37
-
-
0032862474
-
Retropositional parasitism of SINEs on LINEs: Identification of SINEs and LINEs in elasmobranchs
-
Ogiwara, I., M. Miya, K. Ohshima, and N. Okada. 1999. Retropositional parasitism of SINEs on LINEs: identification of SINEs and LINEs in elasmobranchs. Mol. Biol. Evol. 16:1238-1250.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1238-1250
-
-
Ogiwara, I.1
Miya, M.2
Ohshima, K.3
Okada, N.4
-
38
-
-
0036177682
-
V-SINEs: A new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit
-
Ogiwara, I., M. Miya, K. Ohshima, and N. Okada. 2002. V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit. Genome Res. 12:316-324.
-
(2002)
Genome Res.
, vol.12
, pp. 316-324
-
-
Ogiwara, I.1
Miya, M.2
Ohshima, K.3
Okada, N.4
-
39
-
-
0029927086
-
The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements
-
Ohshima, K., M. Hamada, Y. Terai, and N. Okada. 1996. The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements. Mol. Cell. Biol. 16:3756-3764.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 3756-3764
-
-
Ohshima, K.1
Hamada, M.2
Terai, Y.3
Okada, N.4
-
40
-
-
0031027784
-
The 3′ ends of tRNA-derived SINEs originated from the 3′ ends of LINEs: A new example from the bovine genome
-
Okada, N., and M. Hamada. 1997. The 3′ ends of tRNA-derived SINEs originated from the 3′ ends of LINEs: a new example from the bovine genome. J. Mol. Evol. 44:852-56.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 852-856
-
-
Okada, N.1
Hamada, M.2
-
41
-
-
0031593205
-
SINEs and LINEs share common 3′ sequences: A review
-
Okada, N., M. Hamada, I. Ogiwara, and K. Ohshima. 1997. SINEs and LINEs share common 3′ sequences: a review. Gene 205:229-243.
-
(1997)
Gene
, vol.205
, pp. 229-243
-
-
Okada, N.1
Hamada, M.2
Ogiwara, I.3
Ohshima, K.4
-
42
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A., and T. L. Blundell. 1993. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234:779-815.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
43
-
-
0030479536
-
The origin of interspersed repeats in the human genome
-
Smit, A. F. 1996. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6:743-748.
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 743-748
-
-
Smit, A.F.1
-
44
-
-
0037047396
-
Human L1 retrotransposition is associated with genetic instability in vivo
-
Symer, D. E., C. Connelly, S. T. Szak, E. M. Caputo, G. J. Cost, G. Parmigiani, and J. D. Boeke. 2002. Human L1 retrotransposition is associated with genetic instability in vivo. Cell 110:327-338.
-
(2002)
Cell
, vol.110
, pp. 327-338
-
-
Symer, D.E.1
Connelly, C.2
Szak, S.T.3
Caputo, E.M.4
Cost, G.J.5
Parmigiani, G.6
Boeke, J.D.7
-
45
-
-
0031729939
-
SINE cousins: The 3′- end tails of the two oldest and distantly related families of SINEs are descended from the 3′ ends of LINEs with the same genealogical origin
-
Terai, Y., K. Takahashi, and N. Okada. 1998. SINE cousins: the 3′- end tails of the two oldest and distantly related families of SINEs are descended from the 3′ ends of LINEs with the same genealogical origin. Mol. Biol. Evol. 15:1460-1471.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1460-1471
-
-
Terai, Y.1
Takahashi, K.2
Okada, N.3
-
46
-
-
0025006614
-
Origin and evolution of retroelements based upon their reverse transcriptase sequences
-
Xiong, Y., and T. H. Eickbush. 1990. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9:3353-3362.
-
(1990)
EMBO J.
, vol.9
, pp. 3353-3362
-
-
Xiong, Y.1
Eickbush, T.H.2
-
47
-
-
0031841767
-
RNA-induced changes in the activity of the endonuclease encoded by the R2 retrotransposable element
-
Yang, J., and T. H. Eickbush. 1998. RNA-induced changes in the activity of the endonuclease encoded by the R2 retrotransposable element. Mol. Cell. Biol. 18:3455-3465.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 3455-3465
-
-
Yang, J.1
Eickbush, T.H.2
-
48
-
-
2942531259
-
Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon
-
Weichenrieder, O., K. Repanas, and A. Perrakis. 2004. Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon. Structure 12:975-986.
-
(2004)
Structure
, vol.12
, pp. 975-986
-
-
Weichenrieder, O.1
Repanas, K.2
Perrakis, A.3
-
49
-
-
0035144498
-
Human L1 retrotransposition: cis preference versus trans complementation
-
Wei W., N. Gilbert, S. L. Ooi, J. F. Lawler, E. M. Ostertag, H. H. Kazazian, J. D. Boeke, and J. V. Moran. 2001. Human L1 retrotransposition: cis preference versus trans complementation. Mol. Cell. Biol. 21:1429-1439.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 1429-1439
-
-
Wei, W.1
Gilbert, N.2
Ooi, S.L.3
Lawler, J.F.4
Ostertag, E.M.5
Kazazian, H.H.6
Boeke, J.D.7
Moran, J.V.8
|