Analysis of the promoter from an expanding mouse retrotransposon subfamily

Genomics

Volumn 56, Issue 3, 1999, Pages 317-323

  Deberardinis, Ralph J ^a   Kazazian Jr , Haig H ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDE; INITIATION FACTOR;

ANIMAL CELL; ARTICLE; CPG ISLAND; EMBRYO; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; RETROPOSON; TRANSCRIPTION INITIATION;

EID: 0033559056     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5729     Document Type: Article

References (38)

1. Adey N. B., Comer M. B., Edgell M. H., Hutchison C. A. III. Nucleotide sequence of a mouse full-length F-type L1 element. Nucleic Acids Res. 19:1991;2497.
2. Adey N. B., Tollefsbol T. O., Sparks A. B., Edgell M. H., Hutchison C. A. III. Molecular resurrection of an extinct ancestral promoter for mouse L1. Proc. Natl. Acad. Sci. USA. 91:1994;1569-1573.
3. Becker K. G., Swergold G. D., Ozato K., Thayer R. E. Binding of the ubiquitous nuclear transcription factor YY1 to acis. Hum. Mol. Genet. 2:1993;1697-1702.
4. Becker K. G., Jedlicka P., Templeton N. S., Liotta L., Ozato K. Characterization of hUCRBP (YY1, NF-E1, δ): A transcription factor that binds the regulatory regions of many viral and cellular genes. Gene. 150:1994;259-266.
5. Boer P. H., Adra C. N., Lau Y. F., McBurney M. W. The testis-specific phosphoglycerate kinase genepgk-2. Mol. Cell. Biol. 7:1987;3107-3112.
6. Bradford J. Development of an L1-Based Transposon Mutagenesis System in Mice. 1997;University of Pennsylvania, Philadelphia.
7. Christy R. J., Brown A. R., Gourlie B. B., Huang R. C. Nucleotide sequences of murine intracisternal A-particle gene LTRs have extensive variability within the R region. Nucleic Acids Res. 13:1985;289-302.
8. DeBerardinis R. J., Kazazian H. H. Full-length L1 elements have retrotransposed into the same 1 kb region of the human and gorilla genomes. J. Mol. Evol. 47:1998;292-301.
9. DeBerardinis R. J., Goodier J. L., Ostertag E. M., Kazazian H. H. Rapid amplification of a retrotransposon subfamily is evolving the mouse genome. Nat. Genet. 20:1998;288-290.
10. Fanning T. G. Size and structure of the highly repetitive BAM HI element in mice. Nucleic Acids Res. 11:1983;5073-5091.
11. Hariharan N., Kelley D. E., Perry R. P. δ, a transcription factor that binds to downstream elements in several polymerase II promoters, is a functionally versatile zinc finger protein. Proc. Natl. Acad. Sci. USA. 88:1991;9799-9803.
12. Holliday R., Grigg G. W. DNA methylation and mutation. Mutat. Res. 285:1993;61-67.
13. Jubier-Maurin V., Cuny G., Laurent A. M., Paquereau L., Roizes G. A new 5′ sequence associated with mouse L1 elements is representative of a major class of L1 termini. Mol. Biol. Evol. 9:1992;41-55.
14. Kingsmore S. F., Giros B., Suh D., Bieniarz M., Caron M. G., Seldin M. F. Glycine receptor β subunit gene mutation in spastic mouse associated with LINE-1 element insertion. Nat. Genet. 7:1994;136-142.
15. Liebold D. M., Swergold G. D., Singer M. F., Thayer R. E., Dombroski B. A., Fanning T. G. Translation of LINE-1 DNA elementsin vitro. Proc. Natl. Acad. Sci. USA. 87:1990;6990-6994.
16. Loeb D. D., Padgett R. W., Hardies S. C., Shehee W. R., Comer M. B., Edgell M. H., Hutchison C. A. III. The sequence of a large L1Md element reveals a tandemly repeated 5′ end and several features found in retrotransposons. Mol. Cell. Biol. 6:1986;168-182.
17. Martin S. L. Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells. Mol. Cell. Biol. 11:1991;4804-4807.
18. McCarrey J. R. Nucleotide sequence of the promoter region of a tissue-specific human retroposon: Comparison with its housekeeping progenitor. Gene. 61:1987;291-298.
19. Moran J. V., Holmes S. E., Naas T. P., DeBerardinis R. J., Boeke J. D., Kazazian H. H. High frequency retrotransposition in cultured mammalian cells. Cell. 87:1996;917-927.
20. Mulhardt C., Fischer M., Gass P., Simon-Chazzottes D., Guenet J.-L., Kuhse J., Betz H., Becker C.-M. Thespastic. Neuron. 13:1994;1003-1015.
21. Naas T. P., DeBerardinis R. J., Moran J. V., Ostertag E. M., Kingsmore S. F., Seldin M. F., Hayashizaki Y., Martin S. L., Kazazian H. H. An actively retrotransposing, novel subfamily of active mouse L1 elements. EMBO J. 17:1998;590-597.
22. Nur I., Pascale E., Furano A. V. The left end of rat L1 (L1Rn, long interspersed repeated) DNA which is a CpG island can function as a promoter. Nucleic Acids Res. 16:1988;9233-9251.
23. Padgett R. W., Hutchison C. A. III, Edgell M. H. The F-type 5′ motif of mouse L1 elements: A major class of L1 termini similar to the A-type in organization but unrelated in sequence. Nucleic Acids Res. 16:1988;739-749.
24. Park K., Atchison M. L. Isolation of a candidate repressor/activator, NF-E1 (YY-1, delta), that binds to the immunoglobulin kappa 3′ enhancer and the immunoglobulin heavy-chain mu E1 site. Proc. Natl. Acad. Sci. USA. 88:1991;9804-9808.
25. Saxton J. A., Martin S. L. Recombination between subtypes creates a mosaic lineage of LINE-1 that is expressed and actively-retrotransposing in the mouse genome. J. Mol. Biol. 280:1998;611-622.
26. Schichman S. A., Severynse D. M., Edgell M. H., Hutchison C. A. III. Strand-specific LINE-1 transcription in mouse F9 cells originates from the youngest phylogenetic subgroup of LINE-1 elements. J. Mol. Biol. 224:1992;559-574.
27. Scott A. F., Schmeckpeper B. J., Abdelrazik M., Comey C. T., O'Hara B., Rossiter J. P., Cooley T., Heath P., Smith K. D., Margolet L. Origin of the human L1 elements: Proposed progenitor genes deduced from a consensus DNA sequence. Genomics. 1:1987;113-125.
28. Seto E., Shi Y., Shenk T. YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro. Nature. 354:1991;241-245.
29. Severynse D. M., Hutchison C. A. III, Edgell M. H. Identification of transcriptional regulatory activity within the 5′ A-type monomer sequence of the mouse LINE-1 retrotransposon. Mamm. Genome. 2:1992;41-50.
30. Shehee W. R., Chao S. F., Loeb D. D., Comer M. B., Hutchison C. A. III, Edgell M. H. Determination of a functional ancestral sequence and definition of the 5′ end of A-type mouse L1 elements. J. Mol. Biol. 196:1987;757-767.
31. Shi Y., Seto E., Chang L.-S., Shenk T. Transcriptional repression by YY1, a human GLI-Kruppel-related protein, and relief of repression by adenovirus E1A protein. Cell. 67:1991;377-388.
32. Swergold G. D. Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol. Cell. Biol. 10:1990;6718-6729.
33. Takahara T., Ohsumi T., Kuromitsu J., Shibata K., Sasaki N., Okazaki Y., Shibata H., Sato S., Yoshiki A., Kusakabe M., Muramatsu M., Ueki M., Okuda K., Hayashizaki Y. Dysfunction of theOrleans reeler. Hum. Mol. Genet. 5:1996;989-993.
34. Thayer R. E., Singer M. F., Fanning T. G. Undermethylation of specificLINE-1LINE-1. Gene. 133:1993;273-277.
35. Usheva A., Shenk T. TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA. Cell. 76:1994;1115-1121.
36. Wincker P., Jubier-Maurin V., Roizes G. Unrelated sequences at the 5′ end of mouse LINE-1 repeated elements define two distinct subfamilies. Nucleic Acids Res. 15:1987;8593-8606.
37. Woodcock D. M., Lawler C. B., Linsenmeyer M. E., Doherty J. P., Warren W. D. Asymmetric methylation in the hypermethylated CpG promoter region of the human L1 retrotransposon. J. Biol. Chem. 272:1997;7810-7816.
38. Yoder J. A., Walsh C. P., Bestor T. H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13:1997;335-340.