메뉴 건너뛰기




Volumn 15, Issue 11, 1998, Pages 1460-1471

Sine cousins: The 3'-end tails of the two oldest and distantly related families of SINEs are descended from the 3' ends of LINEs with the same genealogical origin

Author keywords

Cichlid; LINEs; Retroposon; SINEs

Indexed keywords

AFRICA; ARTICLE; CONSENSUS SEQUENCE; EVOLUTION; FISH; GENE ISOLATION; GENEALOGY; MADAGASCAR; MAMMAL; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; RETROPOSON; SEQUENCE HOMOLOGY; SHORT INTERSPERSED REPEAT; AMINO ACID SEQUENCE; ANIMAL; CENTRAL AMERICA; CICHLID; COMPARATIVE STUDY; CONFORMATION; DNA FLANKING REGION; DNA SEQUENCE; GENE LIBRARY; GENETICS; LONG INTERSPERSED REPEAT; METHODOLOGY; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; SEQUENCE ALIGNMENT; SOUTH AMERICA;

EID: 0031729939     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025873     Document Type: Article
Times cited : (43)

References (50)
  • 3
    • 0019322245 scopus 로고
    • DNA methylation and the frequency of CpG in animal DNA
    • BIRD, A. P. 1980. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res. 8:1499-1504.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 1499-1504
    • Bird, A.P.1
  • 4
    • 0023472826 scopus 로고
    • CpG islands as gene markers in the vertebrate nucleus
    • _. 1987. CpG islands as gene markers in the vertebrate nucleus. Trends Genet. 3:342-347.
    • (1987) Trends Genet. , vol.3 , pp. 342-347
  • 6
    • 0027327411 scopus 로고
    • Chicken repeat 1 elements contain a pol-like open reading frame and belong to non-long terminal repeat class of retrotransposons
    • BURCH, J. B. E., D. L. DAVIS, and N. B. HASS. 1993. Chicken repeat 1 elements contain a pol-like open reading frame and belong to non-long terminal repeat class of retrotransposons. Proc. Natl. Acad. Sci. USA 90:8199-8203.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 8199-8203
    • Burch, J.B.E.1    Davis, D.L.2    Hass, N.B.3
  • 7
    • 0027144279 scopus 로고
    • Evolution of retroposons
    • M. K. HECHT et al., eds. Plenum Press, New York
    • DEININGER, P. L., and M. A. BATZER. 1993. Evolution of retroposons. P. 157 in M. K. HECHT et al., eds. Evolutionary biology. Vol. 27. Plenum Press, New York.
    • (1993) Evolutionary Biology , vol.27 , pp. 157
    • Deininger, P.L.1    Batzer, M.A.2
  • 8
    • 0026862794 scopus 로고
    • Transposing without ends: The non-LTR retrotransposable elements
    • EICKBUSH, T. H. 1992. Transposing without ends: the non-LTR retrotransposable elements. New Biol. 4:430-440.
    • (1992) New Biol. , vol.4 , pp. 430-440
    • Eickbush, T.H.1
  • 9
    • 0002687402 scopus 로고
    • Origin and evolutionary relationships of retroelements
    • Raven Press, New York
    • _. 1994. Origin and evolutionary relationships of retroelements. Pp. 121-157 in S. S. MORSE, ed. The evolutionary biology of viruses. Raven Press, New York.
    • (1994) The Evolutionary Biology of Viruses , pp. 121-157
    • Morse, S.S.1
  • 10
    • 0028870386 scopus 로고
    • Vertical transmission of retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup
    • EICKBUSH, D. G., and T. H. EICKBUSH. 1995. Vertical transmission of retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup. Genetics 139:671-681.
    • (1995) Genetics , vol.139 , pp. 671-681
    • Eickbush, D.G.1    Eickbush, T.H.2
  • 11
    • 0025305860 scopus 로고
    • A highly repetitive and transcribable sequence in the tortoise genome is a retroposon
    • ENDOH, H., S. NAGAHASHI, and N. OKADA. 1990. A highly repetitive and transcribable sequence in the tortoise genome is a retroposon. Eur. J. Biochem. 189:25-31.
    • (1990) Eur. J. Biochem. , vol.189 , pp. 25-31
    • Endoh, H.1    Nagahashi, S.2    Okada, N.3
  • 12
    • 0022480924 scopus 로고
    • Total DNA transcription in vitro: A procedure to detect highly repetitive and transcribable sequences with tRNA-like structures
    • ENDOH, H., and N. OKADA. 1986. Total DNA transcription in vitro: a procedure to detect highly repetitive and transcribable sequences with tRNA-like structures. Proc. Natl. Acad. Sci. USA 83:251-255.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 251-255
    • Endoh, H.1    Okada, N.2
  • 13
    • 0021101153 scopus 로고
    • Size and structure of the highly repetitive BAM HI element in mice
    • FANNING, T. G. 1983. Size and structure of the highly repetitive BAM HI element in mice. Nucleic Acids Res. 11:5073-5091.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 5073-5091
    • Fanning, T.G.1
  • 14
    • 0023635633 scopus 로고
    • LINE-1: A mammalian transposable element
    • FANNING, T. G., and P. A. MEYLAN. 1988. LINE-1: a mammalian transposable element. Biochim. Biophys. Acta 910: 203-212.
    • (1988) Biochim. Biophys. Acta , vol.910 , pp. 203-212
    • Fanning, T.G.1    Meylan, P.A.2
  • 15
    • 0019883546 scopus 로고
    • Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements
    • GALLI, G., H. HOFSTETTER, and M. L. BIRNSTIEL. 1981. Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements. Nature 294:626-631.
    • (1981) Nature , vol.294 , pp. 626-631
    • Galli, G.1    Hofstetter, H.2    Birnstiel, M.L.3
  • 16
    • 0021474109 scopus 로고
    • Defining the beginning and end of Kpn1 family elements
    • GRIMALDI, G., J. SKOWRONSKI, and M. F. SINGER. 1984. Defining the beginning and end of Kpn1 family elements. EMBO J. 3:1753-1759.
    • (1984) EMBO J. , vol.3 , pp. 1753-1759
    • Grimaldi, G.1    Skowronski, J.2    Singer, M.F.3
  • 17
    • 0019869111 scopus 로고
    • Short interspersed repetitive DNA elements in eucaryotes: Transposable DNA elements generated by reverse transcription of RNA pol III transcripts?
    • JAGADEESWARAN, P., B. G. FORGET, and S. M. WEISSMAN. 1981. Short interspersed repetitive DNA elements in eucaryotes: transposable DNA elements generated by reverse transcription of RNA pol III transcripts? Cell 26:141-142.
    • (1981) Cell , vol.26 , pp. 141-142
    • Jagadeeswaran, P.1    Forget, B.G.2    Weissman, S.M.3
  • 18
    • 0028861735 scopus 로고
    • Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the Mesozoic era
    • JURKA, J., E. ZEITKIEWICZ, and D. LABUDA. 1995. Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the Mesozoic era. Nucleic Acids Res. 23:110-175.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 110-175
    • Jurka, J.1    Zeitkiewicz, E.2    Labuda, D.3
  • 19
    • 0030731154 scopus 로고    scopus 로고
    • Determination of the entire sequence of turtle CRl: The first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif
    • KAJIKAWA, M., K. OHSHIMA, and N. OKADA. 1997. Determination of the entire sequence of turtle CRl: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif. Mol. Biol. Evol. 14:1206-1217.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1206-1217
    • Kajikawa, M.1    Ohshima, K.2    Okada, N.3
  • 20
    • 0026088772 scopus 로고
    • Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution
    • KIDO, Y., M. AONO, T. YAMAKI, K. MATSUMOTO, S. MURATA, S. SANEYOSHI, and N. OKADA. 1991. Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc. Natl. Acad. Sci. USA 88: 2326-2330.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 2326-2330
    • Kido, Y.1    Aono, M.2    Yamaki, T.3    Matsumoto, K.4    Murata, S.5    Saneyoshi, S.6    Okada, N.7
  • 21
    • 0028000997 scopus 로고
    • Amplification of distinct subfamilies of short interspersed elements during evolution of the Salmonidae
    • KIDO, Y, M. HEMBERG, N. TAKASAKI, and N. OKADA. 1994. Amplification of distinct subfamilies of short interspersed elements during evolution of the Salmonidae. J. Mol. Biol. 241:633-644.
    • (1994) J. Mol. Biol. , vol.241 , pp. 633-644
    • Kido, Y.1    Hemberg, M.2    Takasaki, N.3    Okada, N.4
  • 22
    • 0029591608 scopus 로고
    • Evolution of the active sequences of Hpal short interspersed elements
    • KIDO, Y., M. SAITOH, S. MURATA, and N. OKADA. 1995. Evolution of the active sequences of Hpal short interspersed elements. J. Mol. Evol. 41:986-995.
    • (1995) J. Mol. Evol. , vol.41 , pp. 986-995
    • Kido, Y.1    Saitoh, M.2    Murata, S.3    Okada, N.4
  • 24
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • LUAN, D. D., M. H. KORMAN, J. L. JAKUBCZAK, and T. H. EICKBUSH. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605.
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 25
    • 0025162768 scopus 로고
    • Recently transposed Alu repeats result from multiple source genes
    • MATERA, A. G., U. HELLMANN, M. F. HINTS, and C. W. SCHMID. 1990. Recently transposed Alu repeats result from multiple source genes. Nucleic Acids Res. 18:6019-6023.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6019-6023
    • Matera, A.G.1    Hellmann, U.2    Hints, M.F.3    Schmid, C.W.4
  • 26
    • 0031014702 scopus 로고    scopus 로고
    • Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element
    • MATHEWS, D. H., A. R. BANERJEE, D. D. LUAN, T. H. EICKBUSH, and D. H. TURNER. 1997. Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA 3:1-16.
    • (1997) RNA , vol.3 , pp. 1-16
    • Mathews, D.H.1    Banerjee, A.R.2    Luan, D.D.3    Eickbush, T.H.4    Turner, D.H.5
  • 28
    • 0029927086 scopus 로고    scopus 로고
    • The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements
    • OHSHIMA, K., M. HAMADA, Y. TERAI, and N. OKADA. 1996. The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements. Mol. Cell. Biol. 16:3756-3764.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 3756-3764
    • Ohshima, K.1    Hamada, M.2    Terai, Y.3    Okada, N.4
  • 29
    • 0027289469 scopus 로고
    • Several short interspersed repetitive elements (SINEs) in distant species may have originated from a common ancestral retrovirus: Characterization of a squid SINE and a possible mechanism for generation of tRNA-derived retroposons
    • OHSHIMA, K., R. KOISHI, M. MATSUO, and N. OKADA. 1993. Several short interspersed repetitive elements (SINEs) in distant species may have originated from a common ancestral retrovirus: characterization of a squid SINE and a possible mechanism for generation of tRNA-derived retroposons. Proc. Natl. Acad. Sci. USA 90:6260-6264.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6260-6264
    • Ohshima, K.1    Koishi, R.2    Matsuo, M.3    Okada, N.4
  • 31
    • 0001414578 scopus 로고
    • SINEs: Short interspersed repeated elements of the eucaryotic genome
    • _. 1991b. SINEs: short interspersed repeated elements of the eucaryotic genome. Trends Ecol. Evol. 6:358-361.
    • (1991) Trends Ecol. Evol. , vol.6 , pp. 358-361
  • 32
    • 0031593205 scopus 로고    scopus 로고
    • SINEs and LINEs share common 3' sequences: A review
    • OKADA, N., M. HAMADA, I. OGIWARA, and K. OHSHIMA. 1997. SINEs and LINEs share common 3' sequences: a review. Gene 205:229-243.
    • (1997) Gene , vol.205 , pp. 229-243
    • Okada, N.1    Hamada, M.2    Ogiwara, I.3    Ohshima, K.4
  • 34
    • 0021895321 scopus 로고
    • The origin and evolution of retroposons
    • ROGERS, J. 1985. The origin and evolution of retroposons. Int. Rev. Cytol. 93:187-279.
    • (1985) Int. Rev. Cytol. , vol.93 , pp. 187-279
    • Rogers, J.1
  • 35
    • 0027026168 scopus 로고
    • Transcriptional regulation and transcriptional selection of active SINE sequence
    • SCHMID, C. W., and R. J. MARAIA. 1992. Transcriptional regulation and transcriptional selection of active SINE sequence. Curr. Opin. Genet. Dev. 2:874-882.
    • (1992) Curr. Opin. Genet. Dev. , vol.2 , pp. 874-882
    • Schmid, C.W.1    Maraia, R.J.2
  • 37
    • 0020044638 scopus 로고
    • SINEs and LINEs: Highly repeated short and long interspersed sequences in mammalian genomes
    • SINGER, M. F 1982. SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes. Cell 28:433-434.
    • (1982) Cell , vol.28 , pp. 433-434
    • Singer, M.F.1
  • 38
    • 0004164996 scopus 로고
    • University Science Books, Mill Valley, Calif.
    • SINGER, M., and P. BERG. 1991. Genes & genomes. University Science Books, Mill Valley, Calif.
    • (1991) Genes & Genomes
    • Singer, M.1    Berg, P.2
  • 39
    • 0030479536 scopus 로고    scopus 로고
    • The origin of interspersed repeats in the human genome
    • SMIT, A. F. A. 1996. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6:743-748.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 743-748
    • Smit, A.F.A.1
  • 40
    • 0028804572 scopus 로고
    • MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation
    • SMIT, A. F. A., and A. D. RIGGS. 1995. MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res. 23:98-102.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 98-102
    • Smit, A.F.A.1    Riggs, A.D.2
  • 41
    • 0028920059 scopus 로고
    • Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
    • SMIT, F A., G. TOTH, A. D. RIGGS, and J. JURKA. 1995. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J. Mol. Biol. 246:401-417.
    • (1995) J. Mol. Biol. , vol.246 , pp. 401-417
    • Smit, F.A.1    Toth, G.2    Riggs, A.D.3    Jurka, J.4
  • 42
    • 0001847445 scopus 로고
    • Phylogenetic intrarelationships of the family Cichlidae: An overview
    • M. H. A. KEENLEYSIDE, ed. Chapman and Hall, London
    • STIASSNY, M. L. J. 1991. Phylogenetic intrarelationships of the family Cichlidae: an overview. Pp. 1-35 in M. H. A. KEENLEYSIDE, ed. Cichlid fishes: behaviour, ecology and evolution. Chapman and Hall, London.
    • (1991) Cichlid Fishes: Behaviour, Ecology and Evolution , pp. 1-35
    • Stiassny, M.L.J.1
  • 43
    • 0029500916 scopus 로고
    • The role of mantle plumes in continental breakup: Case histories from Gondwanaland
    • STOREY, B. C. 1995. The role of mantle plumes in continental breakup: case histories from Gondwanaland. Nature 377: 301-308.
    • (1995) Nature , vol.377 , pp. 301-308
    • Storey, B.C.1
  • 44
    • 0031955141 scopus 로고    scopus 로고
    • A novel family of short interspersed repetitive elements (SINEs) from cichlids: The insertion patterns of SINEs at orthologous Ioci support monophyly of four major groups of these fishes in Lake Tanganyika
    • TAKAHASHI, K., Y. TERAI, S. MURATA, M. NISHIDA, and N. OKADA. 1998. A novel family of short interspersed repetitive elements (SINEs) from cichlids: the insertion patterns of SINEs at orthologous Ioci support monophyly of four major groups of these fishes in Lake Tanganyika. Mol. Biol. Evol. 15:391-407.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 391-407
    • Takahashi, K.1    Terai, Y.2    Murata, S.3    Nishida, M.4    Okada, N.5
  • 45
    • 0021127698 scopus 로고
    • Alu sequences are processed 7SL RNA genes
    • ULLU, E., and C. TSCHUDI. 1984. Alu sequences are processed 7SL RNA genes. Nature 312:171-172.
    • (1984) Nature , vol.312 , pp. 171-172
    • Ullu, E.1    Tschudi, C.2
  • 47
    • 0019186902 scopus 로고
    • An abundant cytoplasmic 7S RNA is complementary to the domain interspersed middle repetitive DNA sequence family in the human genome
    • WEINER, A. M. 1980. An abundant cytoplasmic 7S RNA is complementary to the domain interspersed middle repetitive DNA sequence family in the human genome. Cell 22:209-218.
    • (1980) Cell , vol.22 , pp. 209-218
    • Weiner, A.M.1
  • 48
    • 0022555861 scopus 로고
    • Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic infomation
    • WEINER, A. M., P. L. DEININGER, and A. EFSTRATIADIS. 1986. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic infomation. Annu. Rev. Biochem. 55:631-661.
    • (1986) Annu. Rev. Biochem. , vol.55 , pp. 631-661
    • Weiner, A.M.1    Deininger, P.L.2    Efstratiadis, A.3
  • 49
    • 0024288633 scopus 로고
    • A new family of repetitive, retroposon-like sequences in the genomes of the rainbow trout
    • WINKFEIN, R. J., R. D. MOIR, S. A. KRAWETS, J. BLANCO, J. C. STATES, and G. H. DIXON. 1988. A new family of repetitive, retroposon-like sequences in the genomes of the rainbow trout. Eur. J. Biochem. 176:255-264.
    • (1988) Eur. J. Biochem. , vol.176 , pp. 255-264
    • Winkfein, R.J.1    Moir, R.D.2    Krawets, S.A.3    Blanco, J.4    States, J.C.5    Dixon, G.H.6
  • 50
    • 0029818927 scopus 로고    scopus 로고
    • Evolutionary conservation of microsatellite flanking regions and their utility in resolving the phylogeny of cichlid fishes (Pisces: Perciformes)
    • ZARDOYA, R., D. M. VOLLMER, C. CRADDOCK, J. T. STREELMAN, S. KARL, and A. MAYER. 1996. Evolutionary conservation of microsatellite flanking regions and their utility in resolving the phylogeny of cichlid fishes (Pisces: Perciformes). Proc. R. Soc. Biol. Sci. 236:1589-1598.
    • (1996) Proc. R. Soc. Biol. Sci. , vol.236 , pp. 1589-1598
    • Zardoya, R.1    Vollmer, D.M.2    Craddock, C.3    Streelman, J.T.4    Karl, S.5    Mayer, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.