-
1
-
-
0025183708
-
Basic local alignment search tool
-
ALTSCHUL, S., W. GISH, W. MILLER, E. W. MYERS, and D. J. LIPMAN. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0025633325
-
Structure and variability of recently inserted Alu family members
-
BATZER, M. A., G. E. KILROY, P. E. RICHARD, T. H. SHAIKH, T. D. DESSELLE, C. L. HOPPENS, and P. L. DEININGER. 1990. Structure and variability of recently inserted Alu family members. Nucleic Acids Res. 18:6793-6798.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6793-6798
-
-
Batzer, M.A.1
Kilroy, G.E.2
Richard, P.E.3
Shaikh, T.H.4
Desselle, T.D.5
Hoppens, C.L.6
Deininger, P.L.7
-
3
-
-
0019322245
-
DNA methylation and the frequency of CpG in animal DNA
-
BIRD, A. P. 1980. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res. 8:1499-1504.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 1499-1504
-
-
Bird, A.P.1
-
4
-
-
0023472826
-
CpG islands as gene markers in the vertebrate nucleus
-
_. 1987. CpG islands as gene markers in the vertebrate nucleus. Trends Genet. 3:342-347.
-
(1987)
Trends Genet.
, vol.3
, pp. 342-347
-
-
-
5
-
-
0342596934
-
Sources and evolution of human Alu repeated sequences
-
BRITTEN, R. J., W. F. BARON, D. B. STOUT, and E. H. DAVIDSON. 1988. Sources and evolution of human Alu repeated sequences. Proc. Natl. Acad. Sci. USA 85:4770-4774.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 4770-4774
-
-
Britten, R.J.1
Baron, W.F.2
Stout, D.B.3
Davidson, E.H.4
-
6
-
-
0027327411
-
Chicken repeat 1 elements contain a pol-like open reading frame and belong to non-long terminal repeat class of retrotransposons
-
BURCH, J. B. E., D. L. DAVIS, and N. B. HASS. 1993. Chicken repeat 1 elements contain a pol-like open reading frame and belong to non-long terminal repeat class of retrotransposons. Proc. Natl. Acad. Sci. USA 90:8199-8203.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8199-8203
-
-
Burch, J.B.E.1
Davis, D.L.2
Hass, N.B.3
-
7
-
-
0027144279
-
Evolution of retroposons
-
M. K. HECHT et al., eds. Plenum Press, New York
-
DEININGER, P. L., and M. A. BATZER. 1993. Evolution of retroposons. P. 157 in M. K. HECHT et al., eds. Evolutionary biology. Vol. 27. Plenum Press, New York.
-
(1993)
Evolutionary Biology
, vol.27
, pp. 157
-
-
Deininger, P.L.1
Batzer, M.A.2
-
8
-
-
0026862794
-
Transposing without ends: The non-LTR retrotransposable elements
-
EICKBUSH, T. H. 1992. Transposing without ends: the non-LTR retrotransposable elements. New Biol. 4:430-440.
-
(1992)
New Biol.
, vol.4
, pp. 430-440
-
-
Eickbush, T.H.1
-
9
-
-
0002687402
-
Origin and evolutionary relationships of retroelements
-
Raven Press, New York
-
_. 1994. Origin and evolutionary relationships of retroelements. Pp. 121-157 in S. S. MORSE, ed. The evolutionary biology of viruses. Raven Press, New York.
-
(1994)
The Evolutionary Biology of Viruses
, pp. 121-157
-
-
Morse, S.S.1
-
10
-
-
0028870386
-
Vertical transmission of retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup
-
EICKBUSH, D. G., and T. H. EICKBUSH. 1995. Vertical transmission of retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup. Genetics 139:671-681.
-
(1995)
Genetics
, vol.139
, pp. 671-681
-
-
Eickbush, D.G.1
Eickbush, T.H.2
-
11
-
-
0025305860
-
A highly repetitive and transcribable sequence in the tortoise genome is a retroposon
-
ENDOH, H., S. NAGAHASHI, and N. OKADA. 1990. A highly repetitive and transcribable sequence in the tortoise genome is a retroposon. Eur. J. Biochem. 189:25-31.
-
(1990)
Eur. J. Biochem.
, vol.189
, pp. 25-31
-
-
Endoh, H.1
Nagahashi, S.2
Okada, N.3
-
12
-
-
0022480924
-
Total DNA transcription in vitro: A procedure to detect highly repetitive and transcribable sequences with tRNA-like structures
-
ENDOH, H., and N. OKADA. 1986. Total DNA transcription in vitro: a procedure to detect highly repetitive and transcribable sequences with tRNA-like structures. Proc. Natl. Acad. Sci. USA 83:251-255.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 251-255
-
-
Endoh, H.1
Okada, N.2
-
13
-
-
0021101153
-
Size and structure of the highly repetitive BAM HI element in mice
-
FANNING, T. G. 1983. Size and structure of the highly repetitive BAM HI element in mice. Nucleic Acids Res. 11:5073-5091.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 5073-5091
-
-
Fanning, T.G.1
-
14
-
-
0023635633
-
LINE-1: A mammalian transposable element
-
FANNING, T. G., and P. A. MEYLAN. 1988. LINE-1: a mammalian transposable element. Biochim. Biophys. Acta 910: 203-212.
-
(1988)
Biochim. Biophys. Acta
, vol.910
, pp. 203-212
-
-
Fanning, T.G.1
Meylan, P.A.2
-
15
-
-
0019883546
-
Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements
-
GALLI, G., H. HOFSTETTER, and M. L. BIRNSTIEL. 1981. Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements. Nature 294:626-631.
-
(1981)
Nature
, vol.294
, pp. 626-631
-
-
Galli, G.1
Hofstetter, H.2
Birnstiel, M.L.3
-
16
-
-
0021474109
-
Defining the beginning and end of Kpn1 family elements
-
GRIMALDI, G., J. SKOWRONSKI, and M. F. SINGER. 1984. Defining the beginning and end of Kpn1 family elements. EMBO J. 3:1753-1759.
-
(1984)
EMBO J.
, vol.3
, pp. 1753-1759
-
-
Grimaldi, G.1
Skowronski, J.2
Singer, M.F.3
-
17
-
-
0019869111
-
Short interspersed repetitive DNA elements in eucaryotes: Transposable DNA elements generated by reverse transcription of RNA pol III transcripts?
-
JAGADEESWARAN, P., B. G. FORGET, and S. M. WEISSMAN. 1981. Short interspersed repetitive DNA elements in eucaryotes: transposable DNA elements generated by reverse transcription of RNA pol III transcripts? Cell 26:141-142.
-
(1981)
Cell
, vol.26
, pp. 141-142
-
-
Jagadeeswaran, P.1
Forget, B.G.2
Weissman, S.M.3
-
18
-
-
0028861735
-
Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the Mesozoic era
-
JURKA, J., E. ZEITKIEWICZ, and D. LABUDA. 1995. Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the Mesozoic era. Nucleic Acids Res. 23:110-175.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 110-175
-
-
Jurka, J.1
Zeitkiewicz, E.2
Labuda, D.3
-
19
-
-
0030731154
-
Determination of the entire sequence of turtle CRl: The first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif
-
KAJIKAWA, M., K. OHSHIMA, and N. OKADA. 1997. Determination of the entire sequence of turtle CRl: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif. Mol. Biol. Evol. 14:1206-1217.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1206-1217
-
-
Kajikawa, M.1
Ohshima, K.2
Okada, N.3
-
20
-
-
0026088772
-
Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution
-
KIDO, Y., M. AONO, T. YAMAKI, K. MATSUMOTO, S. MURATA, S. SANEYOSHI, and N. OKADA. 1991. Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc. Natl. Acad. Sci. USA 88: 2326-2330.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 2326-2330
-
-
Kido, Y.1
Aono, M.2
Yamaki, T.3
Matsumoto, K.4
Murata, S.5
Saneyoshi, S.6
Okada, N.7
-
21
-
-
0028000997
-
Amplification of distinct subfamilies of short interspersed elements during evolution of the Salmonidae
-
KIDO, Y, M. HEMBERG, N. TAKASAKI, and N. OKADA. 1994. Amplification of distinct subfamilies of short interspersed elements during evolution of the Salmonidae. J. Mol. Biol. 241:633-644.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 633-644
-
-
Kido, Y.1
Hemberg, M.2
Takasaki, N.3
Okada, N.4
-
22
-
-
0029591608
-
Evolution of the active sequences of Hpal short interspersed elements
-
KIDO, Y., M. SAITOH, S. MURATA, and N. OKADA. 1995. Evolution of the active sequences of Hpal short interspersed elements. J. Mol. Evol. 41:986-995.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 986-995
-
-
Kido, Y.1
Saitoh, M.2
Murata, S.3
Okada, N.4
-
23
-
-
0026794789
-
Phylogenetic evidence for multiple Alu source genes
-
LEEFLANG, E. P., W. M. LIU, C. HASHIMOTO, P. V. CHOUDARY, and C. W. SCHMID. 1992. Phylogenetic evidence for multiple Alu source genes. J. Mol. Evol. 35:7-16.
-
(1992)
J. Mol. Evol.
, vol.35
, pp. 7-16
-
-
Leeflang, E.P.1
Liu, W.M.2
Hashimoto, C.3
Choudary, P.V.4
Schmid, C.W.5
-
24
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
LUAN, D. D., M. H. KORMAN, J. L. JAKUBCZAK, and T. H. EICKBUSH. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
25
-
-
0025162768
-
Recently transposed Alu repeats result from multiple source genes
-
MATERA, A. G., U. HELLMANN, M. F. HINTS, and C. W. SCHMID. 1990. Recently transposed Alu repeats result from multiple source genes. Nucleic Acids Res. 18:6019-6023.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6019-6023
-
-
Matera, A.G.1
Hellmann, U.2
Hints, M.F.3
Schmid, C.W.4
-
26
-
-
0031014702
-
Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element
-
MATHEWS, D. H., A. R. BANERJEE, D. D. LUAN, T. H. EICKBUSH, and D. H. TURNER. 1997. Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA 3:1-16.
-
(1997)
RNA
, vol.3
, pp. 1-16
-
-
Mathews, D.H.1
Banerjee, A.R.2
Luan, D.D.3
Eickbush, T.H.4
Turner, D.H.5
-
27
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
MORAN, J. V., S. E. HOLMES, T. P. NAAS, R. J. DEBERNARDINIS, J. D. BOEKE, and H. H. KAZAZIAN JR. 1996. High frequency retrotransposition in cultured mammalian cells. Cell 87: 917-927.
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
Debernardinis, R.J.4
Boeke, J.D.5
Kazazian Jr., H.H.6
-
28
-
-
0029927086
-
The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements
-
OHSHIMA, K., M. HAMADA, Y. TERAI, and N. OKADA. 1996. The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements. Mol. Cell. Biol. 16:3756-3764.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 3756-3764
-
-
Ohshima, K.1
Hamada, M.2
Terai, Y.3
Okada, N.4
-
29
-
-
0027289469
-
Several short interspersed repetitive elements (SINEs) in distant species may have originated from a common ancestral retrovirus: Characterization of a squid SINE and a possible mechanism for generation of tRNA-derived retroposons
-
OHSHIMA, K., R. KOISHI, M. MATSUO, and N. OKADA. 1993. Several short interspersed repetitive elements (SINEs) in distant species may have originated from a common ancestral retrovirus: characterization of a squid SINE and a possible mechanism for generation of tRNA-derived retroposons. Proc. Natl. Acad. Sci. USA 90:6260-6264.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6260-6264
-
-
Ohshima, K.1
Koishi, R.2
Matsuo, M.3
Okada, N.4
-
31
-
-
0001414578
-
SINEs: Short interspersed repeated elements of the eucaryotic genome
-
_. 1991b. SINEs: short interspersed repeated elements of the eucaryotic genome. Trends Ecol. Evol. 6:358-361.
-
(1991)
Trends Ecol. Evol.
, vol.6
, pp. 358-361
-
-
-
32
-
-
0031593205
-
SINEs and LINEs share common 3' sequences: A review
-
OKADA, N., M. HAMADA, I. OGIWARA, and K. OHSHIMA. 1997. SINEs and LINEs share common 3' sequences: a review. Gene 205:229-243.
-
(1997)
Gene
, vol.205
, pp. 229-243
-
-
Okada, N.1
Hamada, M.2
Ogiwara, I.3
Ohshima, K.4
-
33
-
-
0002722857
-
Evolution of tRNA-derived SINEs
-
R. J. MARAIA, ed. R. G. Landes, Austin, Tex.
-
OKADA, N., and K. OHSHIMA. 1995. Evolution of tRNA-derived SINEs. Pp. 61-79 in R. J. MARAIA, ed. The impact of short interspersed elements (SINEs) on the host genome. R. G. Landes, Austin, Tex.
-
(1995)
The Impact of Short Interspersed Elements (SINEs) on the Host Genome
, pp. 61-79
-
-
Okada, N.1
Ohshima, K.2
-
34
-
-
0021895321
-
The origin and evolution of retroposons
-
ROGERS, J. 1985. The origin and evolution of retroposons. Int. Rev. Cytol. 93:187-279.
-
(1985)
Int. Rev. Cytol.
, vol.93
, pp. 187-279
-
-
Rogers, J.1
-
35
-
-
0027026168
-
Transcriptional regulation and transcriptional selection of active SINE sequence
-
SCHMID, C. W., and R. J. MARAIA. 1992. Transcriptional regulation and transcriptional selection of active SINE sequence. Curr. Opin. Genet. Dev. 2:874-882.
-
(1992)
Curr. Opin. Genet. Dev.
, vol.2
, pp. 874-882
-
-
Schmid, C.W.1
Maraia, R.J.2
-
36
-
-
0030794201
-
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
-
SHIMAMURA, M., H. YASUE, K. OHSHIMA, H. ABE, H. KATO, T. KISHIRO, M. GOTO, I. MUNECHIKA, and N. OKADA. 1997. Molecular evidence from retroposons that whales form a clade within even-toed ungulates. Nature 338:666-670.
-
(1997)
Nature
, vol.338
, pp. 666-670
-
-
Shimamura, M.1
Yasue, H.2
Ohshima, K.3
Abe, H.4
Kato, H.5
Kishiro, T.6
Goto, M.7
Munechika, I.8
Okada, N.9
-
37
-
-
0020044638
-
SINEs and LINEs: Highly repeated short and long interspersed sequences in mammalian genomes
-
SINGER, M. F 1982. SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes. Cell 28:433-434.
-
(1982)
Cell
, vol.28
, pp. 433-434
-
-
Singer, M.F.1
-
38
-
-
0004164996
-
-
University Science Books, Mill Valley, Calif.
-
SINGER, M., and P. BERG. 1991. Genes & genomes. University Science Books, Mill Valley, Calif.
-
(1991)
Genes & Genomes
-
-
Singer, M.1
Berg, P.2
-
39
-
-
0030479536
-
The origin of interspersed repeats in the human genome
-
SMIT, A. F. A. 1996. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6:743-748.
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 743-748
-
-
Smit, A.F.A.1
-
40
-
-
0028804572
-
MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation
-
SMIT, A. F. A., and A. D. RIGGS. 1995. MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res. 23:98-102.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 98-102
-
-
Smit, A.F.A.1
Riggs, A.D.2
-
41
-
-
0028920059
-
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
-
SMIT, F A., G. TOTH, A. D. RIGGS, and J. JURKA. 1995. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J. Mol. Biol. 246:401-417.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 401-417
-
-
Smit, F.A.1
Toth, G.2
Riggs, A.D.3
Jurka, J.4
-
42
-
-
0001847445
-
Phylogenetic intrarelationships of the family Cichlidae: An overview
-
M. H. A. KEENLEYSIDE, ed. Chapman and Hall, London
-
STIASSNY, M. L. J. 1991. Phylogenetic intrarelationships of the family Cichlidae: an overview. Pp. 1-35 in M. H. A. KEENLEYSIDE, ed. Cichlid fishes: behaviour, ecology and evolution. Chapman and Hall, London.
-
(1991)
Cichlid Fishes: Behaviour, Ecology and Evolution
, pp. 1-35
-
-
Stiassny, M.L.J.1
-
43
-
-
0029500916
-
The role of mantle plumes in continental breakup: Case histories from Gondwanaland
-
STOREY, B. C. 1995. The role of mantle plumes in continental breakup: case histories from Gondwanaland. Nature 377: 301-308.
-
(1995)
Nature
, vol.377
, pp. 301-308
-
-
Storey, B.C.1
-
44
-
-
0031955141
-
A novel family of short interspersed repetitive elements (SINEs) from cichlids: The insertion patterns of SINEs at orthologous Ioci support monophyly of four major groups of these fishes in Lake Tanganyika
-
TAKAHASHI, K., Y. TERAI, S. MURATA, M. NISHIDA, and N. OKADA. 1998. A novel family of short interspersed repetitive elements (SINEs) from cichlids: the insertion patterns of SINEs at orthologous Ioci support monophyly of four major groups of these fishes in Lake Tanganyika. Mol. Biol. Evol. 15:391-407.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 391-407
-
-
Takahashi, K.1
Terai, Y.2
Murata, S.3
Nishida, M.4
Okada, N.5
-
45
-
-
0021127698
-
Alu sequences are processed 7SL RNA genes
-
ULLU, E., and C. TSCHUDI. 1984. Alu sequences are processed 7SL RNA genes. Nature 312:171-172.
-
(1984)
Nature
, vol.312
, pp. 171-172
-
-
Ullu, E.1
Tschudi, C.2
-
46
-
-
0019856592
-
Direct repeats flank three small nuclear RNA pseudogenes in the human genome
-
VAN ARSDELL, S. W., R. A. DENISON, L. B. BERNSTEIN, A. M. WEINER, T. MANSER, and R. F GESTELAND. 1981. Direct repeats flank three small nuclear RNA pseudogenes in the human genome. Cell 26:11-17.
-
(1981)
Cell
, vol.26
, pp. 11-17
-
-
Van Arsdell, S.W.1
Denison, R.A.2
Bernstein, L.B.3
Weiner, A.M.4
Manser, T.5
Gesteland, R.F.6
-
47
-
-
0019186902
-
An abundant cytoplasmic 7S RNA is complementary to the domain interspersed middle repetitive DNA sequence family in the human genome
-
WEINER, A. M. 1980. An abundant cytoplasmic 7S RNA is complementary to the domain interspersed middle repetitive DNA sequence family in the human genome. Cell 22:209-218.
-
(1980)
Cell
, vol.22
, pp. 209-218
-
-
Weiner, A.M.1
-
48
-
-
0022555861
-
Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic infomation
-
WEINER, A. M., P. L. DEININGER, and A. EFSTRATIADIS. 1986. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic infomation. Annu. Rev. Biochem. 55:631-661.
-
(1986)
Annu. Rev. Biochem.
, vol.55
, pp. 631-661
-
-
Weiner, A.M.1
Deininger, P.L.2
Efstratiadis, A.3
-
49
-
-
0024288633
-
A new family of repetitive, retroposon-like sequences in the genomes of the rainbow trout
-
WINKFEIN, R. J., R. D. MOIR, S. A. KRAWETS, J. BLANCO, J. C. STATES, and G. H. DIXON. 1988. A new family of repetitive, retroposon-like sequences in the genomes of the rainbow trout. Eur. J. Biochem. 176:255-264.
-
(1988)
Eur. J. Biochem.
, vol.176
, pp. 255-264
-
-
Winkfein, R.J.1
Moir, R.D.2
Krawets, S.A.3
Blanco, J.4
States, J.C.5
Dixon, G.H.6
-
50
-
-
0029818927
-
Evolutionary conservation of microsatellite flanking regions and their utility in resolving the phylogeny of cichlid fishes (Pisces: Perciformes)
-
ZARDOYA, R., D. M. VOLLMER, C. CRADDOCK, J. T. STREELMAN, S. KARL, and A. MAYER. 1996. Evolutionary conservation of microsatellite flanking regions and their utility in resolving the phylogeny of cichlid fishes (Pisces: Perciformes). Proc. R. Soc. Biol. Sci. 236:1589-1598.
-
(1996)
Proc. R. Soc. Biol. Sci.
, vol.236
, pp. 1589-1598
-
-
Zardoya, R.1
Vollmer, D.M.2
Craddock, C.3
Streelman, J.T.4
Karl, S.5
Mayer, A.6
|