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Volumn 87, Issue 5, 2004, Pages 3050-3065

Molecular dynamics study of gating in the mechanosensitive channel of small conductance MscS

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; ASPARTIC ACID; CHLORIDE ION; MEMBRANE PROTEIN; POTASSIUM ION; PROTEIN MSCS; UNCLASSIFIED DRUG; 1-PALMITOYL-2-OLEOYLPHOSPHATIDYLCHOLINE; 2 OLEOYL 1 PALMITOYLPHOSPHATIDYLCHOLINE; ESCHERICHIA COLI PROTEIN; ION CHANNEL; MSCS PROTEIN, E COLI; PHOSPHATIDYLCHOLINE; WATER;

EID: 13544256698     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.104.046045     Document Type: Article
Times cited : (139)

References (56)
  • 1
    • 2142715470 scopus 로고    scopus 로고
    • Water dynamics and dewetting transitions in the small mechanosensitive channel MscS
    • Anishkin, A., and S. Sukharev. 2004. Water dynamics and dewetting transitions in the small mechanosensitive channel MscS. Biophys. J. 86:2883-2895.
    • (2004) Biophys. J. , vol.86 , pp. 2883-2895
    • Anishkin, A.1    Sukharev, S.2
  • 3
    • 2242431668 scopus 로고    scopus 로고
    • Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel
    • Bass, R. B., P. Strop, M. Barclay, and D. C. Rees. 2002. Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel. Science. 298:1582-1587.
    • (2002) Science , vol.298 , pp. 1582-1587
    • Bass, R.B.1    Strop, P.2    Barclay, M.3    Rees, D.C.4
  • 4
    • 0038472282 scopus 로고    scopus 로고
    • Liquid-vapor oscillations of water in hydrophobic nanopores
    • Beckstein, O., and M. S. P. Sansom. 2003. Liquid-vapor oscillations of water in hydrophobic nanopores. Proc. Natl. Acad. Sci. USA. 100:7063-7068.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7063-7068
    • Beckstein, O.1    Sansom, M.S.P.2
  • 5
    • 33748573642 scopus 로고    scopus 로고
    • The influence of geometry, surface character, and flexibility on the permeation of ions and water through biological pores
    • Beckstein, O., and M. S. P. Sansom. 2004. The influence of geometry, surface character, and flexibility on the permeation of ions and water through biological pores. Phys. Biol. 1:42-52.
    • (2004) Phys. Biol. , vol.1 , pp. 42-52
    • Beckstein, O.1    Sansom, M.S.P.2
  • 6
    • 0024804803 scopus 로고
    • A patch-clamp study of ion channels of inner and outer membranes and of contact zones of E. coli, fused into giant liposomes
    • Berrier, C., A. Coulombe, C. Houssin, and A. Ghazi. 1989. A patch-clamp study of ion channels of inner and outer membranes and of contact zones of E. coli, fused into giant liposomes. FEBS Lett. 259:27-32.
    • (1989) FEBS Lett. , vol.259 , pp. 27-32
    • Berrier, C.1    Coulombe, A.2    Houssin, C.3    Ghazi, A.4
  • 7
    • 0036728233 scopus 로고    scopus 로고
    • A large iris-like expansion of a mechanosensitive channel protein induced by membrane tension
    • Betanzos, M., C.-S. Chiang, H. R. Guy, and S. Sukharev. 2002. A large iris-like expansion of a mechanosensitive channel protein induced by membrane tension. Nat. Struct. Biol. 9:704-710.
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 704-710
    • Betanzos, M.1    Chiang, C.-S.2    Guy, H.R.3    Sukharev, S.4
  • 8
    • 0037159727 scopus 로고    scopus 로고
    • Force and voltage sensors in one structure
    • Bezanilla, F., and E. Perozo. 2002. Force and voltage sensors in one structure. Science. 298:1562-1563.
    • (2002) Science , vol.298 , pp. 1562-1563
    • Bezanilla, F.1    Perozo, E.2
  • 9
    • 0036787715 scopus 로고    scopus 로고
    • Open-state models of a potassium channel
    • Biggin, P. C., and M. S. P. Sansom. 2002. Open-state models of a potassium channel. Biophys. J. 83:1867-1876.
    • (2002) Biophys. J. , vol.83 , pp. 1867-1876
    • Biggin, P.C.1    Sansom, M.S.P.2
  • 10
    • 0032844441 scopus 로고    scopus 로고
    • Bacterial mechanosensitive channels: Integrating physiology, structure and function
    • Blount, P., and P. C. Moe. 1999. Bacterial mechanosensitive channels: integrating physiology, structure and function. Trends Microbiol. 18:420-424.
    • (1999) Trends Microbiol. , vol.18 , pp. 420-424
    • Blount, P.1    Moe, P.C.2
  • 11
    • 0032545321 scopus 로고    scopus 로고
    • Structure of the MscL homolog from Mycobacterium tuberculosis: A gated mechanosensitive ion channel
    • Chang, G., R. H. Spencer, A. T. Lee, M. T. Barclay, and D. C. Rees. 1998. Structure of the MscL homolog from Mycobacterium tuberculosis: a gated mechanosensitive ion channel. Science. 282:2220-2226.
    • (1998) Science , vol.282 , pp. 2220-2226
    • Chang, G.1    Spencer, R.H.2    Lee, A.T.3    Barclay, M.T.4    Rees, D.C.5
  • 12
    • 0037382083 scopus 로고    scopus 로고
    • Simulation of MscL gating in a bilayer under stress
    • Colombo, G., S. J. Marrink, and A. E. Mark. 2003. Simulation of MscL gating in a bilayer under stress. Biophys. J. 84:2331-2337.
    • (2003) Biophys. J. , vol.84 , pp. 2331-2337
    • Colombo, G.1    Marrink, S.J.2    Mark, A.E.3
  • 14
    • 0028943223 scopus 로고
    • Characterization of mechanosensitive channels in Escherichia coli cytoplasmic membrane by whole-cell patch clamp recording
    • Cui, C., D. O. Smith, and J. Adler. 1995. Characterization of mechanosensitive channels in Escherichia coli cytoplasmic membrane by whole-cell patch clamp recording. J. Mol. Biol. 44:31-42.
    • (1995) J. Mol. Biol. , vol.44 , pp. 31-42
    • Cui, C.1    Smith, D.O.2    Adler, J.3
  • 15
    • 0041320859 scopus 로고    scopus 로고
    • Investigating lipid composition effects on the mechanosensitive channel of large conductance (MscL) using molecular dynamics simulations
    • Elmore, D. E., and D. A. Dougherty. 2003. Investigating lipid composition effects on the mechanosensitive channel of large conductance (MscL) using molecular dynamics simulations. Biophys. J. 85:1512-1524.
    • (2003) Biophys. J. , vol.85 , pp. 1512-1524
    • Elmore, D.E.1    Dougherty, D.A.2
  • 16
    • 0032614136 scopus 로고    scopus 로고
    • Constant surface tension simulations of lipid bilayers: The sensitivity of surface areas and compressibilities
    • Feller, S. E., and R. W. Pastor. 1999. Constant surface tension simulations of lipid bilayers: the sensitivity of surface areas and compressibilities. J. Chem. Phys. 111:1281-1287.
    • (1999) J. Chem. Phys. , vol.111 , pp. 1281-1287
    • Feller, S.E.1    Pastor, R.W.2
  • 17
    • 0038713404 scopus 로고    scopus 로고
    • Mechanisms of selectivity in channels and enzymes studied with interactive molecular dynamics
    • Grayson, P., E. Tajkhorshid, and K. Schulten. 2003. Mechanisms of selectivity in channels and enzymes studied with interactive molecular dynamics. Biophys. J. 85:36-48.
    • (2003) Biophys. J. , vol.85 , pp. 36-48
    • Grayson, P.1    Tajkhorshid, E.2    Schulten, K.3
  • 18
    • 84963146276 scopus 로고
    • Generalized Verlet algorithm for efficient molecular dynamics simulations with long-range interactions
    • Grubmüller, H., H. Heller, A. Windemuth, and K. Schulten. 1991. Generalized Verlet algorithm for efficient molecular dynamics simulations with long-range interactions. Mol. Sim. 6:121-142.
    • (1991) Mol. Sim. , vol.6 , pp. 121-142
    • Grubmüller, H.1    Heller, H.2    Windemuth, A.3    Schulten, K.4
  • 19
    • 0035039272 scopus 로고    scopus 로고
    • Structural determinants of MscL gating studied by molecular dynamics simulations
    • Gullingsrud, J., D. Kosztin, and K. Schulten. 2001. Structural determinants of MscL gating studied by molecular dynamics simulations. Biophys. J. 80:2074-2081.
    • (2001) Biophys. J. , vol.80 , pp. 2074-2081
    • Gullingsrud, J.1    Kosztin, D.2    Schulten, K.3
  • 20
    • 0141754098 scopus 로고    scopus 로고
    • Gating of MscL studied by steered molecular dynamics
    • Gullingsrud, J., and K. Schulten. 2003. Gating of MscL studied by steered molecular dynamics. Biophys. J. 85:2087-2099.
    • (2003) Biophys. J. , vol.85 , pp. 2087-2099
    • Gullingsrud, J.1    Schulten, K.2
  • 21
    • 2942675244 scopus 로고    scopus 로고
    • Lipid bilayer pressure profiles and mechanosensitive channel gating
    • Gullingsrud, J., and K. Schulten. 2004. Lipid bilayer pressure profiles and mechanosensitive channel gating. Biophys. J. 86:3496-3509.
    • (2004) Biophys. J. , vol.86 , pp. 3496-3509
    • Gullingsrud, J.1    Schulten, K.2
  • 22
    • 0035069134 scopus 로고    scopus 로고
    • Molecular basis of mechanotransduction in living cells
    • Hamill, O. P., and B. Martinac. 2001. Molecular basis of mechanotransduction in living cells. Physiol. Rev. 81:685-740.
    • (2001) Physiol. Rev. , vol.81 , pp. 685-740
    • Hamill, O.P.1    Martinac, B.2
  • 28
    • 0037197932 scopus 로고    scopus 로고
    • Conformational pathways in the gating of Escherichia coli mechanosensitive channel
    • Kong, Y., Y. Shen, T. E. Warth, and J. Ma. 2002. Conformational pathways in the gating of Escherichia coli mechanosensitive channel. Proc. Natl. Acad. Sci. USA. 99:5999-6004.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5999-6004
    • Kong, Y.1    Shen, Y.2    Warth, T.E.3    Ma, J.4
  • 29
    • 0037500247 scopus 로고    scopus 로고
    • C-termini of the Escherichia coli mechanosensitive ion channel (MscS) move apart upon the channel opening
    • Koprowski, P., and A. Kubalski. 2003. C-termini of the Escherichia coli mechanosensitive ion channel (MscS) move apart upon the channel opening. J. Biol. Chem. 278:11237-11245.
    • (2003) J. Biol. Chem. , vol.278 , pp. 11237-11245
    • Koprowski, P.1    Kubalski, A.2
  • 31
    • 0345196593 scopus 로고    scopus 로고
    • Protection of Escherichia coli cells against extreme turgor by activation of MscS and MscL mechanosensitive channels: Identification of genes required for MscS activity
    • Levina, N., S. Totemeyer, N. R. Stokes, P. Louis, M. A. Jones, and I. Booth. 1999. Protection of Escherichia coli cells against extreme turgor by activation of MscS and MscL mechanosensitive channels: identification of genes required for MscS activity. EMBO J. 18:1730-1737.
    • (1999) EMBO J. , vol.18 , pp. 1730-1737
    • Levina, N.1    Totemeyer, S.2    Stokes, N.R.3    Louis, P.4    Jones, M.A.5    Booth, I.6
  • 33
  • 35
    • 4544280751 scopus 로고    scopus 로고
    • Thermodynamics of mechanosensitivity
    • Markin, V. S., and F. Sachs. 2004. Thermodynamics of mechanosensitivity. Phys. Biol. 1:110-124.
    • (2004) Phys. Biol. , vol.1 , pp. 110-124
    • Markin, V.S.1    Sachs, F.2
  • 38
    • 0042858140 scopus 로고    scopus 로고
    • The closed structure of the MscS mechanosensitive channel
    • Miller, S., M. D. Edwards, C. Ozdemir, and I. R. Booth. 2003b. The closed structure of the MscS mechanosensitive channel. J. Biol. Chem. 278:32246-32250.
    • (2003) J. Biol. Chem. , vol.278 , pp. 32246-32250
    • Miller, S.1    Edwards, M.D.2    Ozdemir, C.3    Booth, I.R.4
  • 39
    • 0037008724 scopus 로고    scopus 로고
    • Functional design of bacterial mechanosensitive channels
    • Okada, K., P. C. Moe, and P. Blount. 2002. Functional design of bacterial mechanosensitive channels. J. Biol. Chem. 277:27682-27688.
    • (2002) J. Biol. Chem. , vol.277 , pp. 27682-27688
    • Okada, K.1    Moe, P.C.2    Blount, P.3
  • 40
    • 0037194760 scopus 로고    scopus 로고
    • Open channel structure of MscL and the gating mechanism of mechanosensitive channels
    • Perozo, E., D. M. Cortes, P. Sompornpisut, A. Kloda, and B. Martinac. 2002a. Open channel structure of MscL and the gating mechanism of mechanosensitive channels. Nature. 418:942-948.
    • (2002) Nature , vol.418 , pp. 942-948
    • Perozo, E.1    Cortes, D.M.2    Sompornpisut, P.3    Kloda, A.4    Martinac, B.5
  • 41
    • 0036725152 scopus 로고    scopus 로고
    • Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating
    • Perozo, E., A. Kloda, D. M. Cortes, and B, Martinac. 2002b. Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating. Nat. Struct. Biol. 9:696-703.
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 696-703
    • Perozo, E.1    Kloda, A.2    Cortes, D.M.3    Martinac, B.4
  • 42
    • 0041929590 scopus 로고    scopus 로고
    • Structure and mechanism in prokaryotic mechanosensitive channels
    • Perozo, E., and D. C. Rees. 2003. Structure and mechanism in prokaryotic mechanosensitive channels. Curr. Op. Struct. Biol. 13:432-442.
    • (2003) Curr. Op. Struct. Biol. , vol.13 , pp. 432-442
    • Perozo, E.1    Rees, D.C.2
  • 44
    • 0036536998 scopus 로고    scopus 로고
    • Theoretical and computational models of ion channels
    • Roux, B. 2002. Theoretical and computational models of ion channels. Curr. Op. Struct. Biol. 12:182-189.
    • (2002) Curr. Op. Struct. Biol. , vol.12 , pp. 182-189
    • Roux, B.1
  • 45
    • 3142652094 scopus 로고    scopus 로고
    • Theoretical and computational models of biological ion channels
    • Roux, B., T. Allen, S. Berneche, and W. Im. 2004. Theoretical and computational models of biological ion channels. Quar. Rev. Biophys. 37:15-103.
    • (2004) Quar. Rev. Biophys. , vol.37 , pp. 15-103
    • Roux, B.1    Allen, T.2    Berneche, S.3    Im, W.4
  • 46
    • 4143116650 scopus 로고    scopus 로고
    • Computational studies of membrane channels
    • Roux, B., and K. Schulten. 2004. Computational studies of membrane channels. Structure. 12:1343-1351.
    • (2004) Structure , vol.12 , pp. 1343-1351
    • Roux, B.1    Schulten, K.2
  • 49
    • 0027145628 scopus 로고
    • The pore dimensions of gramicidin A
    • Smart, O., J. Goodfellow, and B. Wallace. 1993. The pore dimensions of gramicidin A. Biophys. J. 65:2455-2460.
    • (1993) Biophys. J. , vol.65 , pp. 2455-2460
    • Smart, O.1    Goodfellow, J.2    Wallace, B.3
  • 50
    • 0031042584 scopus 로고    scopus 로고
    • A novel method for structure-based prediction of ion channel conductance properties
    • Smart, O. S., J. Breed, G. R. Smith, and M. S. P. Sansom. 1997. A novel method for structure-based prediction of ion channel conductance properties. Biophys. J. 72:1109-1126.
    • (1997) Biophys. J. , vol.72 , pp. 1109-1126
    • Smart, O.S.1    Breed, J.2    Smith, G.R.3    Sansom, M.S.P.4
  • 51
    • 0035013784 scopus 로고    scopus 로고
    • A system for interactive molecular dynamics simulation
    • J.F. Hughes and C.H. Séquin, editors. New ACM SIGGRAPH, New York
    • Stone, J., J. Gullingsrud, P. Grayson, and K. Schulten. 2001. A system for interactive molecular dynamics simulation. In 2001 ACM Symposium on Interactive 3D Graphics. J.F. Hughes and C.H. Séquin, editors. New ACM SIGGRAPH, New York. 191-194.
    • (2001) 2001 ACM Symposium on Interactive 3D Graphics , pp. 191-194
    • Stone, J.1    Gullingsrud, J.2    Grayson, P.3    Schulten, K.4
  • 52
    • 0036280794 scopus 로고    scopus 로고
    • Purification of the small mechanosensitive channel of Escherichia coli (MscS): The subunit structure, conduction, and gating characteristics in liposomes
    • Sukharev, S. 2002. Purification of the small mechanosensitive channel of Escherichia coli (MscS): the subunit structure, conduction, and gating characteristics in liposomes. Biophys. J. 83:290-298.
    • (2002) Biophys. J. , vol.83 , pp. 290-298
    • Sukharev, S.1
  • 53
    • 0035825634 scopus 로고    scopus 로고
    • The gating mechanism of the large mechanosensitive channel MscL
    • Sukharev, S., M. Betanzos, C.-S. Chiang, and H. R. Guy. 2001. The gating mechanism of the large mechanosensitive channel MscL. Nature. 409:720-724.
    • (2001) Nature , vol.409 , pp. 720-724
    • Sukharev, S.1    Betanzos, M.2    Chiang, C.-S.3    Guy, H.R.4
  • 54
    • 2142803260 scopus 로고    scopus 로고
    • Mechanosensitive channels: Multiplicity of families and gating paradigms
    • Sukharev, S., and D. Corey. 2004. Mechanosensitive channels: multiplicity of families and gating paradigms. Sci. STKE. 219:re4.
    • (2004) Sci. STKE. , vol.219
    • Sukharev, S.1    Corey, D.2
  • 55
    • 0028224356 scopus 로고
    • A large-conductance mechanosensitive channel in E. coli encoded by MscL alone
    • Sukharev, S. I., P. Blount, B. Martinac, F. R. Blattner, and C. Kung. 1994. A large-conductance mechanosensitive channel in E. coli encoded by MscL alone. Nature. 368:265-268.
    • (1994) Nature , vol.368 , pp. 265-268
    • Sukharev, S.I.1    Blount, P.2    Martinac, B.3    Blattner, F.R.4    Kung, C.5
  • 56
    • 84986518863 scopus 로고
    • AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions
    • Weiner, P. K., and P. A. Kollman. 1981. AMBER: assisted model building with energy refinement. A general program for modeling molecules and their interactions. J. Comput. Chem. 2:287-303.
    • (1981) J. Comput. Chem. , vol.2 , pp. 287-303
    • Weiner, P.K.1    Kollman, P.A.2


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