-
1
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
P.B. Rupert, and A.R. Ferre-D'Amare Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis Nature 410 2001 780 786
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferre-D'Amare, A.R.2
-
2
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
H.W. Pley, K.M. Flaherty, and D.B. McKay Three-dimensional structure of a hammerhead ribozyme Nature 372 1994 68 74
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
3
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
A.R. Ferre-D'Amare, K. Zhou, and J.A. Doudna Crystal structure of a hepatitis delta virus ribozyme Nature 395 1998 567 574
-
(1998)
Nature
, vol.395
, pp. 567-574
-
-
Ferre-D'Amare, A.R.1
Zhou, K.2
Doudna, J.A.3
-
5
-
-
0028983910
-
Birth of the snoRNPs: The evolution of RNase MRP and the eukaryotic pre-rRNA-processing system
-
J.P. Morrissey, and D. Tollervey Birth of the snoRNPs: the evolution of RNase MRP and the eukaryotic pre-rRNA-processing system Trends Biochem. Sci. 20 1995 78 82
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 78-82
-
-
Morrissey, J.P.1
Tollervey, D.2
-
6
-
-
0031711821
-
Ribonuclease P: Unity and diversity in a tRNA processing ribozyme
-
D.N. Frank, and N.R. Pace Ribonuclease P: unity and diversity in a tRNA processing ribozyme Annu. Rev. Biochem. 67 1998 153 180
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 153-180
-
-
Frank, D.N.1
Pace, N.R.2
-
8
-
-
0021332087
-
Catalytic activity of an RNA molecule prepared by transcription in vitro
-
C. Guerrier-Takada, and S. Altman Catalytic activity of an RNA molecule prepared by transcription in vitro Science 223 1984 285 286
-
(1984)
Science
, vol.223
, pp. 285-286
-
-
Guerrier-Takada, C.1
Altman, S.2
-
9
-
-
0032562128
-
Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAsp
-
J.C. Kurz, S. Niranjanakumari, and C.A. Fierke Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAsp Biochemistry 37 1998 2393 2400
-
(1998)
Biochemistry
, vol.37
, pp. 2393-2400
-
-
Kurz, J.C.1
Niranjanakumari, S.2
Fierke, C.A.3
-
10
-
-
0032417685
-
Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA
-
S. Niranjanakumari, T. Stams, S.M. Crary, D.W. Christianson, and C.A. Fierke Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA Proc. Natl Acad. Sci. USA 95 1998 15212 15217
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 15212-15217
-
-
Niranjanakumari, S.1
Stams, T.2
Crary, S.M.3
Christianson, D.W.4
Fierke, C.A.5
-
11
-
-
0032581021
-
The protein component of Bacillus subtilis ribonuclease P increases catalytic efficiency by enhancing interactions with the 5′ leader sequence of pre-tRNAAsp
-
S.M. Crary, S. Niranjanakumari, and C.A. Fierke The protein component of Bacillus subtilis ribonuclease P increases catalytic efficiency by enhancing interactions with the 5′ leader sequence of pre-tRNAAsp Biochemistry 37 1998 9409 9416
-
(1998)
Biochemistry
, vol.37
, pp. 9409-9416
-
-
Crary, S.M.1
Niranjanakumari, S.2
Fierke, C.A.3
-
12
-
-
0036441045
-
Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P
-
E.L. Christian, N.H. Zahler, N.M. Kaye, and M.E. Harris Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P Methods 28 2002 307 322
-
(2002)
Methods
, vol.28
, pp. 307-322
-
-
Christian, E.L.1
Zahler, N.H.2
Kaye, N.M.3
Harris, M.E.4
-
13
-
-
0033779905
-
Ribonuclease P: A ribonucleoprotein enzyme
-
J.C. Kurz, and C.A. Fierke Ribonuclease P: a ribonucleoprotein enzyme Curr. Opin. Chem. Biol. 4 2000 553 558
-
(2000)
Curr. Opin. Chem. Biol.
, vol.4
, pp. 553-558
-
-
Kurz, J.C.1
Fierke, C.A.2
-
14
-
-
0038170017
-
Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P
-
M.E. Harris, and E.L. Christian Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P Curr. Opin. Struct. Biol. 13 2003 325 333
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 325-333
-
-
Harris, M.E.1
Christian, E.L.2
-
15
-
-
0038475910
-
Recognition of the 5′ leader of pre-tRNA substrates by the active site of ribonuclease P
-
N.H. Zahler, E.L. Christian, and M.E. Harris Recognition of the 5′ leader of pre-tRNA substrates by the active site of ribonuclease P RNA 9 2003 734 745
-
(2003)
RNA
, vol.9
, pp. 734-745
-
-
Zahler, N.H.1
Christian, E.L.2
Harris, M.E.3
-
16
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
T.M. Lowe, and S.R. Eddy tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucl. Acids Res. 25 1997 955 964
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
17
-
-
0036702994
-
The residue immediately upstream of the RNase P cleavage site is a positive determinant
-
M. Brannvall, B.M. Fredrik Pettersson, and L.A. Kirsebom The residue immediately upstream of the RNase P cleavage site is a positive determinant Biochimie 84 2002 693 703
-
(2002)
Biochimie
, vol.84
, pp. 693-703
-
-
Brannvall, M.1
Fredrik Pettersson, B.M.2
Kirsebom, L.A.3
-
18
-
-
0036865184
-
RNase P RNA-mediated catalysis
-
L.A. Kirsebom RNase P RNA-mediated catalysis Biochem. Soc. Trans. 30 2002 1153 1158
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 1153-1158
-
-
Kirsebom, L.A.1
-
19
-
-
0029810895
-
Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site
-
J.M. Warnecke, J.P. Furste, W.D. Hardt, V.A. Erdmann, and R.K. Hartmann Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site Proc. Natl Acad. Sci. USA 93 1996 8924 8928
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 8924-8928
-
-
Warnecke, J.M.1
Furste, J.P.2
Hardt, W.D.3
Erdmann, V.A.4
Hartmann, R.K.5
-
20
-
-
0033538479
-
Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis
-
J.M. Warnecke, R. Held, S. Busch, and R.K. Hartmann Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis J. Mol. Biol. 290 1999 433 445
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 433-445
-
-
Warnecke, J.M.1
Held, R.2
Busch, S.3
Hartmann, R.K.4
-
21
-
-
0031027138
-
2+ coordinated to the pro-RP oxygen of the scissile bond
-
2+ coordinated to the pro-RP oxygen of the scissile bond Biochemistry 36 1997 2425 2438
-
(1997)
Biochemistry
, vol.36
, pp. 2425-2438
-
-
Chen, Y.1
Li, X.2
Gegenheimer, P.3
-
22
-
-
0027973546
-
Base pairing between Escherichia coli RNase P RNA and its substrate
-
L.A. Kirsebom, and S.G. Svard Base pairing between Escherichia coli RNase P RNA and its substrate EMBO J. 13 1994 4870 4876
-
(1994)
EMBO J.
, vol.13
, pp. 4870-4876
-
-
Kirsebom, L.A.1
Svard, S.G.2
-
23
-
-
0242366429
-
Manganese ions induce miscleavage in the Escherichia coli RNase P RNA- catalyzed reaction
-
M. Brannvall, and L.A. Kirsebom Manganese ions induce miscleavage in the Escherichia coli RNase P RNA- catalyzed reaction J. Mol. Biol. 292 1999 53 63
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 53-63
-
-
Brannvall, M.1
Kirsebom, L.A.2
-
24
-
-
0035818595
-
Metal ion cooperativity in ribozyme cleavage of RNA
-
M. Brannvall, and L.A. Kirsebom Metal ion cooperativity in ribozyme cleavage of RNA Proc. Natl Acad. Sci. USA 98 2001 12943 12947
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 12943-12947
-
-
Brannvall, M.1
Kirsebom, L.A.2
-
25
-
-
0242321976
-
Catalysis by RNase P RNA: Unique features and unprecedented active site plasticity
-
T. Persson, S. Cuzic, and R.K. Hartmann Catalysis by RNase P RNA: unique features and unprecedented active site plasticity J. Biol. Chem. 278 2003 43394 43401
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 43394-43401
-
-
Persson, T.1
Cuzic, S.2
Hartmann, R.K.3
-
26
-
-
0027256149
-
Multiple magnesium ions in the ribonuclease P reaction mechanism
-
D. Smith, and N.R. Pace Multiple magnesium ions in the ribonuclease P reaction mechanism Biochemistry 32 1993 5273 5281
-
(1993)
Biochemistry
, vol.32
, pp. 5273-5281
-
-
Smith, D.1
Pace, N.R.2
-
27
-
-
0026684994
-
Important 2′-hydroxyl groups in model substrates for M1 RNA, the catalytic RNA subunit of RNase P from Escherichia coli
-
J.P. Perreault, and S. Altman Important 2′-hydroxyl groups in model substrates for M1 RNA, the catalytic RNA subunit of RNase P from Escherichia coli J. Mol. Biol. 226 1992 399 409
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 399-409
-
-
Perreault, J.P.1
Altman, S.2
-
28
-
-
0032480795
-
Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme
-
A. Loria, S. Niranjanakumari, C.A. Fierke, and T. Pan Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme Biochemistry 37 1998 15466 15473
-
(1998)
Biochemistry
, vol.37
, pp. 15466-15473
-
-
Loria, A.1
Niranjanakumari, S.2
Fierke, C.A.3
Pan, T.4
-
29
-
-
0042925420
-
Single-molecule transition-state analysis of RNA folding
-
G. Bokinsky, D. Rueda, V.K. Misra, M.M. Rhodes, A. Gordus, and H.P. Babcock Single-molecule transition-state analysis of RNA folding Proc. Natl Acad. Sci. USA 100 2003 9302 9307
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9302-9307
-
-
Bokinsky, G.1
Rueda, D.2
Misra, V.K.3
Rhodes, M.M.4
Gordus, A.5
Babcock, H.P.6
-
30
-
-
0034808071
-
Structural dynamics of catalytic RNA highlighted by fluorescence resonance energy transfer
-
N.G. Walter Structural dynamics of catalytic RNA highlighted by fluorescence resonance energy transfer Methods 25 2001 19 30
-
(2001)
Methods
, vol.25
, pp. 19-30
-
-
Walter, N.G.1
-
31
-
-
0035869008
-
Structure, folding and activity of the VS ribozyme: Importance of the 2-3-6 helical junction
-
D.A. Lafontaine, D.G. Norman, and D.M. Lilley Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction EMBO J. 20 2001 1415 1424
-
(2001)
EMBO J.
, vol.20
, pp. 1415-1424
-
-
Lafontaine, D.A.1
Norman, D.G.2
Lilley, D.M.3
-
32
-
-
0028027336
-
Fluorescence-detected stopped flow with a pyrene labeled substrate reveals that guanosine facilitates docking of the 5′ cleavage site into a high free energy binding mode in the Tetrahymena ribozyme
-
P.C. Bevilacqua, Y. Li, and D.H. Turner Fluorescence-detected stopped flow with a pyrene labeled substrate reveals that guanosine facilitates docking of the 5′ cleavage site into a high free energy binding mode in the Tetrahymena ribozyme Biochemistry 33 1994 11340 11348
-
(1994)
Biochemistry
, vol.33
, pp. 11340-11348
-
-
Bevilacqua, P.C.1
Li, Y.2
Turner, D.H.3
-
33
-
-
0034602925
-
Evidence for helical unwinding of an RNA substrate by the RNA enzyme RNase P: Use of an interstrand disulfide crosslink in substrate
-
D.A. Pomeranz Krummel, O. Kent, A.M. MacMillan, and S. Altman Evidence for helical unwinding of an RNA substrate by the RNA enzyme RNase P: use of an interstrand disulfide crosslink in substrate J. Mol. Biol. 295 2000 1113 1118
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 1113-1118
-
-
Pomeranz Krummel, D.A.1
Kent, O.2
MacMillan, A.M.3
Altman, S.4
-
34
-
-
0001191811
-
Multiple binding modes of substrate to the catalytic RNA subunit of RNase P from Escherichia coli
-
D.A. Pomeranz Krummel, and S. Altman Multiple binding modes of substrate to the catalytic RNA subunit of RNase P from Escherichia coli RNA 5 1999 1021 1033
-
(1999)
RNA
, vol.5
, pp. 1021-1033
-
-
Pomeranz Krummel, D.A.1
Altman, S.2
-
35
-
-
0032516438
-
Recognition of the 5′ leader and the acceptor stem of a pre-tRNA substrate by the ribozyme from Bacillus subtilis RNase P
-
A. Loria, and T. Pan Recognition of the 5′ leader and the acceptor stem of a pre-tRNA substrate by the ribozyme from Bacillus subtilis RNase P Biochemistry 37 1998 10126 10133
-
(1998)
Biochemistry
, vol.37
, pp. 10126-10133
-
-
Loria, A.1
Pan, T.2
-
36
-
-
0033529287
-
The cleavage step of ribonuclease P catalysis is determined by ribozyme-substrate interactions both distal and proximal to the cleavage site
-
A. Loria, and T. Pan The cleavage step of ribonuclease P catalysis is determined by ribozyme-substrate interactions both distal and proximal to the cleavage site Biochemistry 38 1999 8612 8620
-
(1999)
Biochemistry
, vol.38
, pp. 8612-8620
-
-
Loria, A.1
Pan, T.2
-
37
-
-
0027930184
-
A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P
-
J.A. Beebe, and C.A. Fierke A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P Biochemistry 33 1994 10294 10304
-
(1994)
Biochemistry
, vol.33
, pp. 10294-10304
-
-
Beebe, J.A.1
Fierke, C.A.2
-
38
-
-
0029795042
-
Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp
-
J.A. Beebe, J.C. Kurz, and C.A. Fierke Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp Biochemistry 35 1996 10493 104505
-
(1996)
Biochemistry
, vol.35
, pp. 10493-104505
-
-
Beebe, J.A.1
Kurz, J.C.2
Fierke, C.A.3
-
39
-
-
0037199416
-
The affinity of magnesium binding sites in the Bacillus subtilis RNase P×pre-tRNA complex is enhanced by the protein subunit
-
J.C. Kurz, and C.A. Fierke The affinity of magnesium binding sites in the Bacillus subtilis RNase P×pre-tRNA complex is enhanced by the protein subunit Biochemistry 41 2002 9545 9558
-
(2002)
Biochemistry
, vol.41
, pp. 9545-9558
-
-
Kurz, J.C.1
Fierke, C.A.2
-
40
-
-
0032971983
-
Identification of adenosine functional groups involved in substrate binding by the ribonuclease P ribozyme
-
D. Siew, N.H. Zahler, A.G. Cassano, S.A. Strobel, and M.E. Harris Identification of adenosine functional groups involved in substrate binding by the ribonuclease P ribozyme Biochemistry 38 1999 1873 1883
-
(1999)
Biochemistry
, vol.38
, pp. 1873-1883
-
-
Siew, D.1
Zahler, N.H.2
Cassano, A.G.3
Strobel, S.A.4
Harris, M.E.5
-
41
-
-
0033613230
-
The track of the pre-tRNA 5′ leader in the ribonuclease P ribozyme-substrate complex
-
E.L. Christian, and M.E. Harris The track of the pre-tRNA 5′ leader in the ribonuclease P ribozyme-substrate complex Biochemistry 38 1999 12629 12638
-
(1999)
Biochemistry
, vol.38
, pp. 12629-12638
-
-
Christian, E.L.1
Harris, M.E.2
-
42
-
-
0032535635
-
Identification of individual nucleotides in the bacterial ribonuclease P ribozyme adjacent to the pre-tRNA cleavage site by short-range photo-cross-linking
-
E.L. Christian, D.S. McPheeters, and M.E. Harris Identification of individual nucleotides in the bacterial ribonuclease P ribozyme adjacent to the pre-tRNA cleavage site by short-range photo-cross-linking Biochemistry 37 1998 17618 17628
-
(1998)
Biochemistry
, vol.37
, pp. 17618-17628
-
-
Christian, E.L.1
McPheeters, D.S.2
Harris, M.E.3
-
43
-
-
0032473358
-
Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs
-
J.L. Chen, J.M. Nolan, M.E. Harris, and N.R. Pace Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs EMBO J. 17 1998 1515 1525
-
(1998)
EMBO J.
, vol.17
, pp. 1515-1525
-
-
Chen, J.L.1
Nolan, J.M.2
Harris, M.E.3
Pace, N.R.4
-
44
-
-
0027990605
-
Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA
-
M.E. Harris, J.M. Nolan, A. Malhotra, J.W. Brown, S.C. Harvey, and N.R. Pace Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA EMBO J. 13 1994 3953 3963
-
(1994)
EMBO J.
, vol.13
, pp. 3953-3963
-
-
Harris, M.E.1
Nolan, J.M.2
Malhotra, A.3
Brown, J.W.4
Harvey, S.C.5
Pace, N.R.6
-
47
-
-
0026792946
-
Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis
-
D. Smith, A.B. Burgin, E.S. Haas, and N.R. Pace Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis J. Biol. Chem. 267 1992 2429 2436
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 2429-2436
-
-
Smith, D.1
Burgin, A.B.2
Haas, E.S.3
Pace, N.R.4
-
48
-
-
0036445585
-
Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA
-
N.M. Kaye, N.H. Zahler, E.L. Christian, and M.E. Harris Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA J. Mol. Biol. 324 2002 429 442
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 429-442
-
-
Kaye, N.M.1
Zahler, N.H.2
Christian, E.L.3
Harris, M.E.4
-
49
-
-
0022530665
-
Metal ion requirements and other aspects of the reaction catalyzed by M1 RNA, the RNA subunit of ribonuclease P from Escherichia coli
-
C. Guerrier-Takada, K. Haydock, L. Allen, and S. Altman Metal ion requirements and other aspects of the reaction catalyzed by M1 RNA, the RNA subunit of ribonuclease P from Escherichia coli Biochemistry 25 1986 1509 1515
-
(1986)
Biochemistry
, vol.25
, pp. 1509-1515
-
-
Guerrier-Takada, C.1
Haydock, K.2
Allen, L.3
Altman, S.4
-
50
-
-
0036566051
-
Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA
-
E.L. Christian, N.M. Kaye, and M.E. Harris Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA EMBO J. 21 2002 2253 2262
-
(2002)
EMBO J.
, vol.21
, pp. 2253-2262
-
-
Christian, E.L.1
Kaye, N.M.2
Harris, M.E.3
-
51
-
-
37049122234
-
The reactivity of phosphate esters. Reactions of diesters with nucleophiles
-
A.J. Kirby, and M. Younas The reactivity of phosphate esters. Reactions of diesters with nucleophiles J. Chem. Soc. B 1970 1165 1172
-
(1970)
J. Chem. Soc. B
, pp. 1165-1172
-
-
Kirby, A.J.1
Younas, M.2
-
52
-
-
0037130636
-
Evidence for direct attack by hydroxide in phosphodiester hydrolysis
-
A.G. Cassano, V.E. Anderson, and M.E. Harris Evidence for direct attack by hydroxide in phosphodiester hydrolysis J. Am. Chem. Soc. 124 2002 10964 10965
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 10964-10965
-
-
Cassano, A.G.1
Anderson, V.E.2
Harris, M.E.3
-
53
-
-
0029827586
-
Interaction between Escherichia coli RNase P RNA and the discriminator base results in slow product release
-
A. Tallsjo, J. Kufel, and L.A. Kirsebom Interaction between Escherichia coli RNase P RNA and the discriminator base results in slow product release RNA 2 1996 299 307
-
(1996)
RNA
, vol.2
, pp. 299-307
-
-
Tallsjo, A.1
Kufel, J.2
Kirsebom, L.A.3
-
54
-
-
0032491460
-
RNase P RNA structure and cleavage reflect the primary structure of tRNA genes
-
M. Brannvall, J.G. Mattsson, S.G. Svard, and L.A. Kirsebom RNase P RNA structure and cleavage reflect the primary structure of tRNA genes J. Mol. Biol. 283 1998 771 783
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 771-783
-
-
Brannvall, M.1
Mattsson, J.G.2
Svard, S.G.3
Kirsebom, L.A.4
-
55
-
-
0035340961
-
Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction
-
S. Shan, A.V. Kravchuk, J.A. Piccirilli, and D. Herschlag Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction Biochemistry 40 2001 5161 5171
-
(2001)
Biochemistry
, vol.40
, pp. 5161-5171
-
-
Shan, S.1
Kravchuk, A.V.2
Piccirilli, J.A.3
Herschlag, D.4
-
56
-
-
0033607225
-
Three metal ions at the active site of the Tetrahymena group I ribozyme
-
S. Shan, A. Yoshida, S. Sun, J.A. Piccirilli, and D. Herschlag Three metal ions at the active site of the Tetrahymena group I ribozyme Proc. Natl Acad. Sci. USA 96 1999 12299 12304
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 12299-12304
-
-
Shan, S.1
Yoshida, A.2
Sun, S.3
Piccirilli, J.A.4
Herschlag, D.5
-
57
-
-
0030876444
-
Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation
-
A. Peracchi, L. Beigelman, E.C. Scott, O.C. Uhlenbeck, and D. Herschlag Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation J. Biol. Chem. 272 1997 26822 26826
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 26822-26826
-
-
Peracchi, A.1
Beigelman, L.2
Scott, E.C.3
Uhlenbeck, O.C.4
Herschlag, D.5
-
58
-
-
0026680843
-
Site-specific modification of pre-mRNA: The 2′-hydroxyl groups at the splice sites
-
M.J. Moore, and P.A. Sharp Site-specific modification of pre-mRNA: the 2′-hydroxyl groups at the splice sites Science 256 1992 992 997
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.J.1
Sharp, P.A.2
-
59
-
-
0031009290
-
Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease P
-
A. Loria, and T. Pan Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease P Biochemistry 36 1997 6317 6325
-
(1997)
Biochemistry
, vol.36
, pp. 6317-6325
-
-
Loria, A.1
Pan, T.2
-
60
-
-
0034002685
-
Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme
-
E.L. Christian, N.M. Kaye, and M.E. Harris Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme RNA 6 2000 511 519
-
(2000)
RNA
, vol.6
, pp. 511-519
-
-
Christian, E.L.1
Kaye, N.M.2
Harris, M.E.3
-
61
-
-
0034944725
-
Exploring the minimal substrate requirements for trans-cleavage by RNase P holoenzymes from Escherichia coli and Bacillus subtilis
-
A. Hansen, T. Pfeiffer, T. Zuleeg, S. Limmer, J. Ciesiolka, R. Feltens, and R.K. Hartmann Exploring the minimal substrate requirements for trans-cleavage by RNase P holoenzymes from Escherichia coli and Bacillus subtilis Mol. Microbiol. 41 2001 131 143
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 131-143
-
-
Hansen, A.1
Pfeiffer, T.2
Zuleeg, T.3
Limmer, S.4
Ciesiolka, J.5
Feltens, R.6
Hartmann, R.K.7
-
62
-
-
0037046152
-
NAIM and site-specific functional group modification analysis of RNase P RNA: Magnesium dependent structure within the conserved P1-P4 multihelix junction contributes to catalysis
-
N.M. Kaye, E.L. Christian, and M.E. Harris NAIM and site-specific functional group modification analysis of RNase P RNA: magnesium dependent structure within the conserved P1-P4 multihelix junction contributes to catalysis Biochemistry 41 2002 4533 4545
-
(2002)
Biochemistry
, vol.41
, pp. 4533-4545
-
-
Kaye, N.M.1
Christian, E.L.2
Harris, M.E.3
-
63
-
-
0034674157
-
Differential role of the intermolecular base-pairs G292-C(75) and G293- C(74) in the reaction catalyzed by Escherichia coli RNase P RNA
-
S. Busch, L.A. Kirsebom, H. Notbohm, and R.K. Hartmann Differential role of the intermolecular base-pairs G292-C(75) and G293- C(74) in the reaction catalyzed by Escherichia coli RNase P RNA J. Mol. Biol. 299 2000 941 951
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 941-951
-
-
Busch, S.1
Kirsebom, L.A.2
Notbohm, H.3
Hartmann, R.K.4
-
64
-
-
0030968710
-
Mechanistic aspects of enzymatic catalysis: Lessons from comparison of RNA and protein enzymes
-
G.J. Narlikar, and D. Herschlag Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes Annu. Rev. Biochem. 66 1997 19 59
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 19-59
-
-
Narlikar, G.J.1
Herschlag, D.2
-
65
-
-
0027997590
-
Replacement of the conserved G.U with a G-C pair at the cleavage site of the Tetrahymena ribozyme decreases binding, reactivity, and fidelity
-
A.M. Pyle, S. Moran, S.A. Strobel, T. Chapman, D.H. Turner, and T.R. Cech Replacement of the conserved G.U with a G-C pair at the cleavage site of the Tetrahymena ribozyme decreases binding, reactivity, and fidelity Biochemistry 33 46 1994 13856 13863
-
(1994)
Biochemistry
, vol.33
, Issue.46
, pp. 13856-13863
-
-
Pyle, A.M.1
Moran, S.2
Strobel, S.A.3
Chapman, T.4
Turner, D.H.5
Cech, T.R.6
-
66
-
-
0026580844
-
Evidence for processivity and two-step binding of the RNA substrate from studies of J1/2 mutations of the Tetrahymena ribozyme
-
D. Herschlag Evidence for processivity and two-step binding of the RNA substrate from studies of J1/2 mutations of the Tetrahymena ribozyme Biochemistry 31 1992 1386 1399
-
(1992)
Biochemistry
, vol.31
, pp. 1386-1399
-
-
Herschlag, D.1
-
67
-
-
0026678180
-
Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods
-
P.C. Bevilacqua, R. Kierzek, K.A. Johnson, and D.H. Turner Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods Science 258 5086 1992 1355 1358
-
(1992)
Science
, vol.258
, Issue.5086
, pp. 1355-1358
-
-
Bevilacqua, P.C.1
Kierzek, R.2
Johnson, K.A.3
Turner, D.H.4
|