메뉴 건너뛰기




Volumn 13, Issue 12, 2003, Pages 2621-2636

Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse

Author keywords

[No Author keywords available]

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 3; RNA;

EID: 0348013068     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.1736803     Document Type: Article
Times cited : (90)

References (67)
  • 2
    • 0032512848 scopus 로고    scopus 로고
    • Characterization of a human lysophosphatidic acid acyltransferase that is encoded by a gene located in the class III region of the human major histocompatibility complex
    • Aguado, B. and Campbell, R.D. 1998. Characterization of a human lysophosphatidic acid acyltransferase that is encoded by a gene located in the class III region of the human major histocompatibility complex. J. Biol. Chem. 273: 4096-4105.
    • (1998) J. Biol. Chem. , vol.273 , pp. 4096-4105
    • Aguado, B.1    Campbell, R.D.2
  • 3
    • 0031433066 scopus 로고    scopus 로고
    • The human histone gene cluster at the D6S105 locus
    • Albig, W. and Doenecke, D. 1997. The human histone gene cluster at the D6S105 locus. Hum. Genet. 101: 284-294.
    • (1997) Hum. Genet. , vol.101 , pp. 284-294
    • Albig, W.1    Doenecke, D.2
  • 4
    • 0029943614 scopus 로고    scopus 로고
    • A gene-rich cluster between the CD4 and triosephosphate isomerase genes at human chromosome 12p13
    • Ansari-Lari, M.A., Muzny, D.M., Lu, J., Lu, F., Lilley, C.E., Spanos, S., Malley, T., and Gibbs, R.A. 1996. A gene-rich cluster between the CD4 and triosephosphate isomerase genes at human chromosome 12p13. Genome Res. 6: 314-326.
    • (1996) Genome Res. , vol.6 , pp. 314-326
    • Ansari-Lari, M.A.1    Muzny, D.M.2    Lu, J.3    Lu, F.4    Lilley, C.E.5    Spanos, S.6    Malley, T.7    Gibbs, R.A.8
  • 6
    • 0033861549 scopus 로고    scopus 로고
    • Human and mouse gene structure: Comparative analysis and application to exon prediction
    • Batzoglou, S., Pachter, L., Mesirov, J.P., Berger, B., and Lander, E.S. 2000. Human and mouse gene structure: Comparative analysis and application to exon prediction. Genome Res. 10: 950-958.
    • (2000) Genome Res. , vol.10 , pp. 950-958
    • Batzoglou, S.1    Pachter, L.2    Mesirov, J.P.3    Berger, B.4    Lander, E.S.5
  • 7
    • 0034575122 scopus 로고    scopus 로고
    • The human major histocompatibility complex: Lessons from the DNA sequence
    • Beck, S. and Trowsdale, J. 2000. The human major histocompatibility complex: Lessons from the DNA sequence. Annu. Rev. Genomics Hum. Genet. 1: 117-137.
    • (2000) Annu. Rev. Genomics Hum. Genet. , vol.1 , pp. 117-137
    • Beck, S.1    Trowsdale, J.2
  • 9
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge, C. and Karlin, S. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268: 78-94.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 10
    • 0029834941 scopus 로고    scopus 로고
    • Ordered shotgun sequencing of a 135 kb Xq25 YAC containing ANT2 and four possible genes, including three confirmed by EST matches
    • Chen, C.N., Su, Y., Baybayan, P., Siruno, A., Nagaraja, R., Mazzarella, R., Schlessinger, D., and Chen, E. 1996. Ordered shotgun sequencing of a 135 kb Xq25 YAC containing ANT2 and four possible genes, including three confirmed by EST matches. Nucleic Acids Res. 24: 4034-4041.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4034-4041
    • Chen, C.N.1    Su, Y.2    Baybayan, P.3    Siruno, A.4    Nagaraja, R.5    Mazzarella, R.6    Schlessinger, D.7    Chen, E.8
  • 11
    • 0025193526 scopus 로고
    • 356 → Trp causes steroid 21-hydroxylase deficiency
    • 356 → Trp causes steroid 21-hydroxylase deficiency. J. Biol. Chem. 265: 3549-3552.
    • (1990) J. Biol. Chem. , vol.265 , pp. 3549-3552
    • Chiou, S.H.1    Hu, M.C.2    Chung, B.C.3
  • 13
    • 0031281267 scopus 로고    scopus 로고
    • Complex expression pattern of the TNF region gene LST1 through differential regulation, initiation, and alternative splicing
    • de Baey, A., Fellerhoff, B., Maier, S., Martinozzi, S., Weidle, U., and Weiss, E.H. 1997. Complex expression pattern of the TNF region gene LST1 through differential regulation, initiation, and alternative splicing. Genomics 45: 591-600.
    • (1997) Genomics , vol.45 , pp. 591-600
    • de Baey, A.1    Fellerhoff, B.2    Maier, S.3    Martinozzi, S.4    Weidle, U.5    Weiss, E.H.6
  • 14
    • 0035834629 scopus 로고    scopus 로고
    • G6b, a novel immunoglobulin superfamily member encoded in the human major histocompatibility complex, interacts with SHP-1 and SHP-2
    • de Vet, E.C., Aguado, B., and Campbell, R.D. 2001. G6b, a novel immunoglobulin superfamily member encoded in the human major histocompatibility complex, interacts with SHP-1 and SHP-2. J. Biol. Chem. 276: 42070-42076.
    • (2001) J. Biol. Chem. , vol.276 , pp. 42070-42076
    • de Vet, E.C.1    Aguado, B.2    Campbell, R.D.3
  • 15
  • 17
    • 0033915470 scopus 로고    scopus 로고
    • GESTALT: A workbench for automatic integration and visualization of large-scale genomic sequence analyses
    • Glusman, G. and Lancet, D. 2000. GESTALT: A workbench for automatic integration and visualization of large-scale genomic sequence analyses. Bioinformatics 16: 482-483.
    • (2000) Bioinformatics , vol.16 , pp. 482-483
    • Glusman, G.1    Lancet, D.2
  • 18
    • 0035431197 scopus 로고    scopus 로고
    • Human MHC class III and IV genes and disease associations
    • Gruen, J.R. and Weissman, S.M. 2001. Human MHC class III and IV genes and disease associations. Front. Biosci. 6: D960-D972.
    • (2001) Front. Biosci. , vol.6
    • Gruen, J.R.1    Weissman, S.M.2
  • 20
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 21
    • 0030604698 scopus 로고    scopus 로고
    • Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
    • Kiss-Laszlo, Z., Henry, Y., Bachellerie, J.P., Caizergues-Ferrer, M., and Kiss, T. 1996. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85: 1077-1088.
    • (1996) Cell , vol.85 , pp. 1077-1088
    • Kiss-Laszlo, Z.1    Henry, Y.2    Bachellerie, J.P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 22
    • 0027963488 scopus 로고
    • Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA
    • Koop, B.F. and Hood, L. 1994. Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA. Nat. Genet. 7: 48-53.
    • (1994) Nat. Genet. , vol.7 , pp. 48-53
    • Koop, B.F.1    Hood, L.2
  • 23
    • 0030861903 scopus 로고    scopus 로고
    • The use of a genetic map of biallelic markers in linkage studies
    • Kruglyak, L. 1997. The use of a genetic map of biallelic markers in linkage studies. Nat. Genet. 17: 21-24.
    • (1997) Nat. Genet. , vol.17 , pp. 21-24
    • Kruglyak, L.1
  • 24
    • 0036032222 scopus 로고    scopus 로고
    • Quod erat faciendum: Sequence analysis of the H2-D and H2-Q regions of 129/SvJ mice
    • Kumanovics, A., Madan, A., Qin, S., Rowen, L., Hood, L., and Fischer Lindahl, K. 2002. Quod erat faciendum: Sequence analysis of the H2-D and H2-Q regions of 129/SvJ mice. Immunogenetics 54: 479-489.
    • (2002) Immunogenetics , vol.54 , pp. 479-489
    • Kumanovics, A.1    Madan, A.2    Qin, S.3    Rowen, L.4    Hood, L.5    Fischer Lindahl, K.6
  • 25
    • 0032584222 scopus 로고    scopus 로고
    • A conserved sequence block in murine and human T cell receptor (TCR) Jα region is a composite element that enhances TCR α enhancer activity and binds multiple nuclear factors
    • Kuo, C.L., Chen, M.L., Wang, K., Chou, C.K., Vernooij, B., Seto, D., Koop, B.F., and Hood, L. 1998. A conserved sequence block in murine and human T cell receptor (TCR) Jα region is a composite element that enhances TCR α enhancer activity and binds multiple nuclear factors. Proc. Natl. Acad. Sci. 95: 3839-3844.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 3839-3844
    • Kuo, C.L.1    Chen, M.L.2    Wang, K.3    Chou, C.K.4    Vernooij, B.5    Seto, D.6    Koop, B.F.7    Hood, L.8
  • 27
    • 0034616398 scopus 로고    scopus 로고
    • Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    • Loots, G.G., Locksley, R.M., Blankespoor, C.M., Wang, Z.E., Miller, W., Rubin, E.M., and Frazer, K.A. 2000. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 288: 136-140.
    • (2000) Science , vol.288 , pp. 136-140
    • Loots, G.G.1    Locksley, R.M.2    Blankespoor, C.M.3    Wang, Z.E.4    Miller, W.5    Rubin, E.M.6    Frazer, K.A.7
  • 28
    • 0036294749 scopus 로고    scopus 로고
    • Transcriptional analysis of a novel cluster of LUAU-6 family members in the human and mouse major histocompatibility complex: Five genes with many splice forms
    • Mallya, M., Campbell, R.D., and Aguado, B. 2002. Transcriptional analysis of a novel cluster of LUAU-6 family members in the human and mouse major histocompatibility complex: Five genes with many splice forms. Genomics 80: 113-123.
    • (2002) Genomics , vol.80 , pp. 113-123
    • Mallya, M.1    Campbell, R.D.2    Aguado, B.3
  • 30
    • 0027315727 scopus 로고
    • RNA recognition: A family matter?
    • Mattaj, I.W. 1993. RNA recognition: A family matter? Cell 73: 837-840.
    • (1993) Cell , vol.73 , pp. 837-840
    • Mattaj, I.W.1
  • 32
    • 0344721480 scopus 로고    scopus 로고
    • Complete sequence and gene map of a human major histocompatibility complex
    • The MHC Sequencing Consortium
    • The MHC Sequencing Consortium. 1999. Complete sequence and gene map of a human major histocompatibility complex. Nature 401: 921-923.
    • (1999) Nature , vol.401 , pp. 921-923
  • 33
    • 0034433373 scopus 로고    scopus 로고
    • Identification of a telomeric boundary of the HLA region with potential for predisposition to human narcolepsy
    • Miyagawa, T., Hohjoh, H., Honda, Y., Juji, T., and Tokunaga, K. 2000. Identification of a telomeric boundary of the HLA region with potential for predisposition to human narcolepsy. Immunogenetics 52: 12-18.
    • (2000) Immunogenetics , vol.52 , pp. 12-18
    • Miyagawa, T.1    Hohjoh, H.2    Honda, Y.3    Juji, T.4    Tokunaga, K.5
  • 34
    • 0038617729 scopus 로고    scopus 로고
    • Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
    • Modrek, B. and Lee, C.J. 2003. Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat. Genet. 34: 177-180.
    • (2003) Nat. Genet. , vol.34 , pp. 177-180
    • Modrek, B.1    Lee, C.J.2
  • 35
    • 0030870076 scopus 로고    scopus 로고
    • ESTNOME: A program to align spliced DNA sequences to unspliced genomic DNA
    • Mott, R. 1997. ESTNOME: A program to align spliced DNA sequences to unspliced genomic DNA. Comput. Appl. Biosci. 13: 477-478.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 477-478
    • Mott, R.1
  • 36
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium
    • Mouse Genome Sequencing Consortium. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 37
    • 0031543905 scopus 로고    scopus 로고
    • Alternative splicing of the LST-1 gene located in the Major Histocompatibility Complex on human chromosome 6
    • Neville, M.J. and Campbell, R.D. 1997. Alternative splicing of the LST-1 gene located in the Major Histocompatibility Complex on human chromosome 6. DNA Seq. 8: 155-160.
    • (1997) DNA Seq. , vol.8 , pp. 155-160
    • Neville, M.J.1    Campbell, R.D.2
  • 39
    • 0030966052 scopus 로고    scopus 로고
    • Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains
    • Oeltjen, J.C., Malley, T.M., Muzny, D.M., Miller, W., Gibbs, R.A., and Belmont, J.W. 1997. Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 7: 315-329.
    • (1997) Genome Res. , vol.7 , pp. 315-329
    • Oeltjen, J.C.1    Malley, T.M.2    Muzny, D.M.3    Miller, W.4    Gibbs, R.A.5    Belmont, J.W.6
  • 43
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R. and Lipman, D.J. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. 85: 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 44
    • 0034881247 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism detection by denaturing high-performance liquid chromatography and direct sequencing in genes in the MHC class III region encoding novel cell surface molecules
    • Ribas, G., Neville, M.J., and Campbell, R.D. 2001. Single-nucleotide polymorphism detection by denaturing high-performance liquid chromatography and direct sequencing in genes in the MHC class III region encoding novel cell surface molecules. Immunogenetics 53: 369-381.
    • (2001) Immunogenetics , vol.53 , pp. 369-381
    • Ribas, G.1    Neville, M.J.2    Campbell, R.D.3
  • 47
    • 22444455376 scopus 로고    scopus 로고
    • Deciphering genomes through automated large-scale sequencing
    • Rowen, L., Lasky, S., and Hood, L. 1999. Deciphering genomes through automated large-scale sequencing. Methods Microbiol. 28: 155-192.
    • (1999) Methods Microbiol. , vol.28 , pp. 155-192
    • Rowen, L.1    Lasky, S.2    Hood, L.3
  • 49
    • 0030005821 scopus 로고    scopus 로고
    • Cloning and mapping of a human novel cDNA (NHP2L1) that encodes a protein highly homologous to yeast nuclear protein NHP2
    • Saito, H., Fujiwara, T., Shin, S., Okui, K., and Nakamura, Y. 1996. Cloning and mapping of a human novel cDNA (NHP2L1) that encodes a protein highly homologous to yeast nuclear protein NHP2. Cytogenet. Cell Genet. 72: 191-193.
    • (1996) Cytogenet. Cell Genet. , vol.72 , pp. 191-193
    • Saito, H.1    Fujiwara, T.2    Shin, S.3    Okui, K.4    Nakamura, Y.5
  • 51
    • 0034737325 scopus 로고    scopus 로고
    • Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: A novel context analysis approach
    • Scherf, M., Klingenhoff, A., and Werner, T. 2000. Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: A novel context analysis approach. J. Mol. Biol. 297: 599-606.
    • (2000) J. Mol. Biol. , vol.297 , pp. 599-606
    • Scherf, M.1    Klingenhoff, A.2    Werner, T.3
  • 53
    • 0032930388 scopus 로고    scopus 로고
    • Genome sequencing analysis of the 1.8 Mb entire human MHC class I region
    • Shiina, T., Tamiya, G., Oka, A., Takishima, N., Inoko, H. 1999. Genome sequencing analysis of the 1.8 Mb entire human MHC class I region. Immunol. Rev. 16 7: 193-199.
    • (1999) Immunol. Rev. , vol.167 , pp. 193-199
    • Shiina, T.1    Tamiya, G.2    Oka, A.3    Takishima, N.4    Inoko, H.5
  • 54
    • 0030588730 scopus 로고    scopus 로고
    • A novel gene, G7e, resembling a viral envelope gene, is located at the recombinational hot spot in the class III region of the mouse MHC
    • Snoek, M., van Dinten, L., and van Vugt, H. 1996. A novel gene, G7e, resembling a viral envelope gene, is located at the recombinational hot spot in the class III region of the mouse MHC. Genomics 38: 5-12.
    • (1996) Genomics , vol.38 , pp. 5-12
    • Snoek, M.1    van Dinten, L.2    van Vugt, H.3
  • 55
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • Sonnhammer, E.L. and Durbin, R. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 167: GC1-GC10.
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.1    Durbin, R.2
  • 56
    • 0024392729 scopus 로고
    • Human major histocompatibility complex contains a minimum of 19 genes between the complement cluster and HLA-B
    • Spies, T., Bresnahan, M., and Strominger, J.L. 1989. Human major histocompatibility complex contains a minimum of 19 genes between the complement cluster and HLA-B. Proc. Natl. Acad. Sci. 86: 8955-8958.
    • (1989) Proc. Natl. Acad. Sci. , vol.86 , pp. 8955-8958
    • Spies, T.1    Bresnahan, M.2    Strominger, J.L.3
  • 57
    • 0034073345 scopus 로고    scopus 로고
    • BTL-II: A polymorphic locus with homology to the butyrophilin gene family, located at the border of the major histocompatibility complex class II and class III regions in human and mouse
    • Stammers, M., Rowen, L., Rhodes, D., Trowsdale, J., and Beck, S. 2000. BTL-II: A polymorphic locus with homology to the butyrophilin gene family, located at the border of the major histocompatibility complex class II and class III regions in human and mouse. Immunogenetics 51: 373-382.
    • (2000) Immunogenetics , vol.51 , pp. 373-382
    • Stammers, M.1    Rowen, L.2    Rhodes, D.3    Trowsdale, J.4    Beck, S.5
  • 58
    • 0030850425 scopus 로고    scopus 로고
    • A human cDNA sequence with homology to non-mammalian lysophosphatidic acid acyltransferases
    • Stamps, A.C., Elmore, M.A., Hill, M.E., Kelly, K., Makda, A.A., and Finnen, M.J. 1997. A human cDNA sequence with homology to non-mammalian lysophosphatidic acid acyltransferases. Biochem. J. 326: 455-461.
    • (1997) Biochem. J. , vol.326 , pp. 455-461
    • Stamps, A.C.1    Elmore, M.A.2    Hill, M.E.3    Kelly, K.4    Makda, A.A.5    Finnen, M.J.6
  • 63
    • 0033949170 scopus 로고    scopus 로고
    • Extensive gene duplications and a large inversion characterize the human leukocyte receptor cluster
    • Wende, H., Volz, A., and Ziegler, A. 2000. Extensive gene duplications and a large inversion characterize the human leukocyte receptor cluster. Immunogenetics 51: 703-713.
    • (2000) Immunogenetics , vol.51 , pp. 703-713
    • Wende, H.1    Volz, A.2    Ziegler, A.3
  • 64
    • 0030925549 scopus 로고    scopus 로고
    • Cloning and expression of two human lysophosphatidic acid acyltransferase cDNAs that enhance cytokine-induced signaling responses in cells
    • West, J., Tompkins, C.K., Balantac, N., Nudelman, E., Meengs, B., White, T., Bursten, S., Coleman, J., Kumar, A., Singer, J.W., et al. 1997. Cloning and expression of two human lysophosphatidic acid acyltransferase cDNAs that enhance cytokine-induced signaling responses in cells. DNA Cell Biol. 16: 691-701.
    • (1997) DNA Cell Biol. , vol.16 , pp. 691-701
    • West, J.1    Tompkins, C.K.2    Balantac, N.3    Nudelman, E.4    Meengs, B.5    White, T.6    Bursten, S.7    Coleman, J.8    Kumar, A.9    Singer, J.W.10
  • 65
    • 0033621465 scopus 로고    scopus 로고
    • Transcriptional regulatory elements of the human gene for cytochrome P450c21. (steroid 21-hydroxylase) lie within intron 35 of the linked C4B gene
    • Wijesuriya, S.D., Zhang, G., Dardis, A., and Miller, W.L. 1999. Transcriptional regulatory elements of the human gene for cytochrome P450c21. (steroid 21-hydroxylase) lie within intron 35 of the linked C4B gene. J. Biol. Chem. 274: 38097-38106.
    • (1999) J. Biol. Chem. , vol.274 , pp. 38097-38106
    • Wijesuriya, S.D.1    Zhang, G.2    Dardis, A.3    Miller, W.L.4
  • 66
    • 0037606118 scopus 로고    scopus 로고
    • ACGT - A comparative genomics tool
    • Xie, T. and Hood, L. 2003. ACGT - A comparative genomics tool. Bioinformatics 19: 1039-1040.
    • (2003) Bioinformatics , vol.19 , pp. 1039-1040
    • Xie, T.1    Hood, L.2
  • 67
    • 0033597231 scopus 로고    scopus 로고
    • Modular variations of the human major histocompatibility complex class III genes for serine/threonine kinase RP, complement component C4, steroid 21-hydroxylase CYP21, and tenascin TNX (the RCCX module). A mechanism for gene deletions and disease associations
    • Yang, Z., Mendoza, A.R., Welch, T.R., Zipf, W.B., and Yu, C.Y. 1999. Modular variations of the human major histocompatibility complex class III genes for serine/threonine kinase RP, complement component C4, steroid 21-hydroxylase CYP21, and tenascin TNX (the RCCX module). A mechanism for gene deletions and disease associations. J. Biol. Chem. 274: 12147-12156.
    • (1999) J. Biol. Chem. , vol.274 , pp. 12147-12156
    • Yang, Z.1    Mendoza, A.R.2    Welch, T.R.3    Zipf, W.B.4    Yu, C.Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.