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Relics from the RNA world
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A speculative article that is probably the strongest written argument that modern ncRNAs are fossils of the RNA world. I find the argument fascinating but I don't accept the notion, that billions of years ago, ncRNAs lost a war against proteins for functional supremacy and that modern ncRNAs are like shell-shocked snipers starving in remote jungle caves. I think many ncRNAs are recent evolutionary innovations
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Jeffares D., Poole A., Penny D. Relics from the RNA world. J Mol Evol. 46:1998;18-36. A speculative article that is probably the strongest written argument that modern ncRNAs are fossils of the RNA world. I find the argument fascinating but I don't accept the notion, that billions of years ago, ncRNAs lost a war against proteins for functional supremacy and that modern ncRNAs are like shell-shocked snipers starving in remote jungle caves. I think many ncRNAs are recent evolutionary innovations.
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•], one may disagree with the details - as with any hypothetical evolutionary scenario - but the ideas are interesting
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The RNA World model doesn't generate many testable hypotheses but here the authors propose one. If modern RNAs descend from the RNA world, phylogenetic analysis might indicate that RNA sequence families diversified before proteins did. This is probably the first such test of the RNA World model. The results suggest that lysine tRNAs evolved before the modern forms of lysyl-tRNA synthetase
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Ribas de Pouplana L., Turner R.J., Steer B.A., Schimmel P. Genetic code origins: tRNAs older than their synthetases? Proc Natl Acad Sci USA. 95:1998;11295-11300. The RNA World model doesn't generate many testable hypotheses but here the authors propose one. If modern RNAs descend from the RNA world, phylogenetic analysis might indicate that RNA sequence families diversified before proteins did. This is probably the first such test of the RNA World model. The results suggest that lysine tRNAs evolved before the modern forms of lysyl-tRNA synthetase.
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An example of a functional high-order RNA quaternary structure. Stunningly, the pRNA hexamer appears to form a ring structure, which is thought to be a rotating machine essential for packaging phage DNA into the prohead
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A review of the role of the Xist RNA in dosage compensation in mammals, with some mention of the contrast to the role of small roX RNAs in Drosophila dosage compensation and the lack (so far) of an RNA component in Caenorhabditis dosage compensation. A peculiar fact of X dosage compensation in the three systems is that all three mechanisms are fundamentally different: in XX mammals, one X chromosome is almost completely inactivated; in XO Drosophila, the single X is two-fold hyperactivated; and in XX Caenorhabditis, both X chromosomes are two-fold hypoactivated
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Together with [19], this paper describes the discovery of the roX RNAs involved in Drosophila dosage compensation. Whereas Amrein and Axel [19] identified the roX1 and roX2 RNAs in a subtractive hybridization screen for male-specific neural genes in mushroom bodies, Meller et al. independently identify roX1 starting from an enhancer trap line that expressed lacZ specifically in female mushroom bodies - which is strange because they subsequently show, in agreement with Amrein and Axel, that roX1 is specifically expressed in males
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