The donor subsite of trehalose-6-phosphate synthase: Binary complexes with udp-glucose and udp-2-deoxy-2-fluoro-glucose at 2 Å resolution

Journal of Biological Chemistry

Volumn 279, Issue 3, 2004, Pages 1950-1955

  Gibson, Robert P ^a   Tarling, Chris A ^b   Roberts, Shirley ^a   Withers, Stephen G ^b   Davies, Gideon J ^a  

^a UNIVERSITY OF YORK   (United Kingdom)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; COMPLEXATION; CONFORMATIONS; ENZYMES; ESCHERICHIA COLI; GLUCOSE;

CELLULAR PROTECTION; GLYCOSIDIC BONDS;

BIOCHEMISTRY;

ALPHA,ALPHA 1,1 TREHALOSE 6 PHOSPHATE; DISACCHARIDE; GLUCOSE 6 PHOSPHATE; GLYCOGEN PHOSPHORYLASE; GLYCOSYLTRANSFERASE; OXYGEN RADICAL; SYNTHETASE; TREHALOSE; TREHALOSE 6 PHOSPHATE SYNTHETASE; UNCLASSIFIED DRUG; URIDINE DIPHOSPHATE 2 DEOXY 2 FLUOROGLUCOSE; URIDINE DIPHOSPHATE GLUCOSE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CATALYSIS; CELL PROTECTION; COLD; ENZYME ANALYSIS; ENZYME CONFORMATION; ENZYME SUBUNIT; ESCHERICHIA COLI; FOOD STORAGE; HEAT SHOCK; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY; STRESS;

CATALYSIS; DEOXYGLUCOSE; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GLUCOSYLTRANSFERASES; PROTEIN CONFORMATION; URIDINE DIPHOSPHATE GLUCOSE;

CORYNEBACTERINEAE; ESCHERICHIA COLI;

EID: 0345826092     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M307643200     Document Type: Article

References (60)

1. Elbein, A. D., Pan, Y. T., Pastuszak, I., and Carroll, D. (2003) Glycobiology 13, 17R-27R
2. Singer, M. A., and Lindquist, S. (1998) Trends Biotechnol. 16, 460-468
3. Sussich, F., Skopec, C., Brady, J., and Cesaro, A. (2001) Carbohydr. Res. 334, 165-176
4. Crowe, J. H., Crowe, L. M., and Chapman, D. (1984) Science 223, 701-703
5. Porchia, A. C., Fiol, D. F., and Salerno, G. L. (1999) Plant Sci. 149, 43-49
6. Iwahashi, H., Shimizu, H., Odani, M., and Komatsu, Y. (2003) Extremophiles 7, 291-298
7. Sahara, T., Goda, T., and Ohgiya, S. (2002) J. Biol. Chem. 277, 50015-50021
8. Benaroudj, N., Lee, D. H., and Goldberg, A. L. (2001) J. Biol. Chem. 276, 24261-24267
9. Pereira, E. D., Panek, A. D., and Eleutherio, E. C. A. (2003) Cell Stress Chaperones 8, 120-124
10. Chen, Q. F., Ma, E., Behar, K. L., Xu, T., and Haddad, G. G. (2002) J. Biol. Chem. 277, 3274-3279
11. D'Alfonso, L., Collini, M., and Baldini, G. (2003) Eur. J. Biochem. 270, 2497-2504
12. Welsh, D. T., and Herbert, R. A. (1999) FEMS Microbiol. Lett. 174, 57-63
13. Garg, A. K., Kim, J. K., Owens, T. G., Ranwala, A. P., Do Choi, Y., Kochian, L. V., and Wu, R. J. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 15898-15903
14. Ronning, D. R., Klabunde, T., Besra, G. S., Vissa, V. D., Belisle, J. T., and Sacchettini, J. C. (2002) Nat. Struct. Biol. 7, 141-146
15. Chatterjee, D. (1997) Curr. Opin. Chem. Biol. 1, 579-588
16. De Smet, K. A. L., Weston, A., Brown, I. N., Young, D. B., and Robertson, B. D. (2000) Microbiology 146, 199-208
17. Schluepmann, H., Pellny, T., van Dijken, A., Smeekens, S., and Paul, M. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 6849-6854
18. Eastmond, P. J., and Graham, I. A. (2003) Curr. Opin. Plant Biol. 6, 231-235
19. Foster, A. J., Jenkinson, J. M., and Talbot, N. J. (2003) EMBO J. 22, 225-235
20. Zaragoza, O., Blazquez, M. A., and Gancedo, C. (1998) J. Bacteriol. 180, 3809-3815
21. Wolf, A., Kramer, R., and Morbach, S. (2003) Mol. Microbiol. 49, 1119-1134
22. Tzvetkov, M., Klopprogge, C., Zelder, O., and Liebl, W. (2003) Microbiology 149, 1659-1673
23. Tarbouriech, N., Charnock, S. J., and Davies, G. J. (2001) J. Mol. Biol. 314, 655-661
24. Davies, G. J. (2001) Nat. Struct. Biol. 8, 98-100
25. Couthino, P., Deleury, E., Davies, G. J., and Henrissat, B. (2003) J. Mol. Biol. 328, 307-317
26. Gibson, R. P., Lloyd, R. M., Charnock, S. J., and Davies, G. J. (2002) Acta Crystallogr. Sec. D, 58, 349-351
27. Bourne, Y., and Henrissat, B. (2001) Curr. Opin. Struct. Biol. 11, 593-600
28. Charnock, S., and Davies, G. J. (1999) Biochemistry 38, 6380-6385
29. Vrielink, A., Rüger, W., Driessen, H. P. C., and Freemont, P. S. (1994) EMBO J. 13, 3413-3422
30. Ünligil, U. M., and Rini, J. M. (2000) Curr. Opin. Struct. Biol. 10, 510-517
31. Morera, S., Imberty, A., Aschke-Sonnenborn, U., Ruger, W., and Freemont, P. S. (1999) J. Mol. Biol. 292, 717-730
32. Mulichak, A. M., Losey, H. C., Walsh, C. T., and Garavito, R. M. (2001) Structure 9, 547-557
33. Mulichak, A. M., Losey, H. C., Lu, W., Wawrzak, Z., Walsh, C. T., and Garavito, R. M. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 9238-9243
34. Ha, S., Walker, D., Shi, Y., and Walker, S. (2000) Protein Sci. 9, 1045-1052
35. Gibson, R. P., Turkenburg, J. P., Lloyd, R. M., Charnock, S. J., and Davies, G. J. (2002) Chem. Biol. 9, 1337-1346
36. Stick, R. V., and Watts, A. G. (2002) Monatsh. Chem. 133, 541-554
37. Ortner, J., Albert, M., Weber, H., and Dax, K. (1999) J. Carbohydr. Chem. 18, 297-316
38. Withers, S. G., MacLennan, D. J., and Street, I. P. (1986) Carbohydr. Res. 154, 127-144
39. Wittmann, V., and Wong, C. H. (1997) J. Org. Chem. 62, 2144-2147
40. Collaborative Computational Project Number 4 (1994) Acta Crystallogr. Sec. D 50, 760-763
41. Navaza, J., and Saludijan, P. (1997) Methods Enzymol. 276, 581-594
42. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sec. D 53, 240-255
43. Kleywegt, G. J., and Jones, T. A. (1994) ESF/CCP4 Newsletter 31, 9-14
44. Gastinel, L. N., Bignon, C., Misra, A. K., Hindsgaul, O., Shaper, J. H., and Joziasse, D. H. (2001) EMBO J. 20, 638-649
45. Boix, E., Zhang, Y. N., Swaminathan, G. J., Brew, K., and Acharya, K. R. (2002) J. Biol. Chem. 277, 28310-28318
46. Namchuk, M. N., and Withers, S. G. (1995) Biochemistry 34, 16194-16202
47. Notenboom, V., Birsan, C., Nitz, M., Rose, D. R., Warren, R. A. J., and Withers, S. G. (1998) Nat. Struct. Biol. 5, 812-818
48. Martin, J. L., Johnson, L. N., and Withers, S. G. (1990) Biochemistry 29, 10745-10757
49. Withers, S. G., Madsen, N. B., and Sykes, B. D. (1981) Biochemistry 20, 1748-1756
50. Ly, H. D., Lougheed, B., Wakarchuk, W. W., and Withers, S. G. (2002) Biochemistry 41, 5075-5085
51. Davies, G., Sinnott, M. L., and Withers, S. G. (1997) in Comprehensive Biological Catalysis (Sinnott, M. L., ed) Vol. 1, pp. 119-209, Academic Press, London
52. Persson, K., Ly, H. D., Dieckelmann, M., Wakarchuk, W. W., Withers, S. G., and Strynadka, N. C. J. (2001) Nat. Struct. Biol. 8, 166-175
53. Ünligil, U. M., Zhou, S., Yuwaraj, S., Sarkar, M., Schachter, H., and Rini, J. M. (2000) EMBO J. 19, 5269-5280
54. Vocadlo, D. J., Davies, G. J., Laine, R., and Withers, S. G. (2001) Nature 412, 835-838
55. Tews, I., Perrakis, A., Oppenheim, A., Dauter, Z., Wilson, K. S., and Vorgias, C. E. (1996) Nat. Struct. Biol. 3, 638-648
56. Withers, S. G., Wakarchuk, W. W., and Strynadka, N. C. J. (2002) Chem. Biol. 9, 1270-1273
57. Lewis, E. S., and Boozer, C. E. (1952) J. Am. Chem. Soc. 74, 308-311
58. Sinnott, M. L., and Jencks, W. (1980) J. Am. Chem. Soc. 102, 2026-2032
59. Esnouf, R. M. (1997) J. Mol. Graphics 15, 133-138
60. Read, R. J. (1986) Acta Crystallogr. Sect. A 42, 140-149