-
1
-
-
0036199657
-
PU.1 regulates expression of the interleukin-7 receptor in lymphoid progenitors
-
DeKoter R.P., Lee H.J., Singh H. PU.1 regulates expression of the interleukin-7 receptor in lymphoid progenitors. Immunity. 16:2002;297-309.
-
(2002)
Immunity
, vol.16
, pp. 297-309
-
-
Dekoter, R.P.1
Lee, H.J.2
Singh, H.3
-
2
-
-
0037097733
-
Multiple PU.1 sites cooperate in the regulation of p40(phox) transcription during granulocytic differentiation of myeloid cells
-
Li S.L., Valente A.J., Qiang M., Schlegel W., Gamez M., Clark R.A. Multiple PU.1 sites cooperate in the regulation of p40(phox) transcription during granulocytic differentiation of myeloid cells. Blood. 99:2002;4578-4587.
-
(2002)
Blood
, vol.99
, pp. 4578-4587
-
-
Li, S.L.1
Valente, A.J.2
Qiang, M.3
Schlegel, W.4
Gamez, M.5
Clark, R.A.6
-
4
-
-
0034665729
-
DNA binding specificity studies of four ETS proteins support an indirect read-out mechanism of protein-DNA recognition
-
Szymczyna B.R., Arrowsmith C.H. DNA binding specificity studies of four ETS proteins support an indirect read-out mechanism of protein-DNA recognition. J. Biol. Chem. 275:2000;28363-28370.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 28363-28370
-
-
Szymczyna, B.R.1
Arrowsmith, C.H.2
-
5
-
-
0029670530
-
A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex
-
Kodandapani R., Pio F., Ni C.Z., Piccialli G., Klemsz M., McKercher S., et al. A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex. Nature. 380:1996;456-460.
-
(1996)
Nature
, vol.380
, pp. 456-460
-
-
Kodandapani, R.1
Pio, F.2
Ni, C.Z.3
Piccialli, G.4
Klemsz, M.5
Mckercher, S.6
-
6
-
-
0029125443
-
DNA binding specificities of Spi-1/PU.1 and Spi-B transcription factors and identification of a Spi-1/Spi-B binding site in the c-fes/c-fps promoter
-
Ray-Gallet D., Mao C., Tavitian A., Moreau-Gachelin F. DNA binding specificities of Spi-1/PU.1 and Spi-B transcription factors and identification of a Spi-1/Spi-B binding site in the c-fes/c-fps promoter. Oncogene. 11:1995;303-313.
-
(1995)
Oncogene
, vol.11
, pp. 303-313
-
-
Ray-Gallet, D.1
Mao, C.2
Tavitian, A.3
Moreau-Gachelin, F.4
-
7
-
-
0030846564
-
ETS1-DNA binding and intercalation: Correction
-
Werner M.H., Gronenborn A.M., Clore G.M. ETS1-DNA binding and intercalation: correction. Science. 276:1997;1957.
-
(1997)
Science
, vol.276
, pp. 1957
-
-
Werner, M.H.1
Gronenborn, A.M.2
Clore, G.M.3
-
8
-
-
0028785254
-
The solution structure of the human ETS1-DNA complex reveals a novel mode of binding and true side chain intercalation
-
Werner M.H., Clore M., Fisher C.L., Fisher R.J., Trinh L., Shiloach J., Gronenborn A.M. The solution structure of the human ETS1-DNA complex reveals a novel mode of binding and true side chain intercalation. Cell. 83:1995;761-771.
-
(1995)
Cell
, vol.83
, pp. 761-771
-
-
Werner, M.H.1
Clore, M.2
Fisher, C.L.3
Fisher, R.J.4
Trinh, L.5
Shiloach, J.6
Gronenborn, A.M.7
-
9
-
-
0030044420
-
Solution structure of the ETS domain from murine Ets-1: A winged helix-turn-helix DNA binding motif
-
Donaldson L.W., Petersen J.M., Graves B.J., McIntosh L.P. Solution structure of the ETS domain from murine Ets-1: a winged helix-turn-helix DNA binding motif. EMBO J. 15:1996;125-134.
-
(1996)
EMBO J.
, vol.15
, pp. 125-134
-
-
Donaldson, L.W.1
Petersen, J.M.2
Graves, B.J.3
Mcintosh, L.P.4
-
10
-
-
0028676257
-
Solution structure of the ets domain of Fli-1 when bound to DNA
-
Liang H., Mao X., Olejniczak E.T., Nettesheim D.G., Yu L., Meadows R.P., et al. Solution structure of the ets domain of Fli-1 when bound to DNA. Nature Struct. Biol. 1:1994;871-875.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 871-875
-
-
Liang, H.1
Mao, X.2
Olejniczak, E.T.3
Nettesheim, D.G.4
Yu, L.5
Meadows, R.P.6
-
11
-
-
0032512459
-
The structure of GABPalpha/beta: An ETS domain-ankyrin repeat heterodimer bound to DNA
-
Batchelor A.H., Piper D.E., de la Brousse F.C., McKnight S.L., Wolberger C. The structure of GABPalpha/beta: an ETS domain-ankyrin repeat heterodimer bound to DNA. Science. 279:1998;1037-1041.
-
(1998)
Science
, vol.279
, pp. 1037-1041
-
-
Batchelor, A.H.1
Piper, D.E.2
De La Brousse, F.C.3
Mcknight, S.L.4
Wolberger, C.5
-
12
-
-
0032135105
-
Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: Insights into DNA sequence discrimination by Ets proteins
-
Mo Y., Vaessen B., Johnston K., Marmorstein R. Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins. Mol. Cell. 2:1998;201-212.
-
(1998)
Mol. Cell
, vol.2
, pp. 201-212
-
-
Mo, Y.1
Vaessen, B.2
Johnston, K.3
Marmorstein, R.4
-
13
-
-
0034031280
-
Structure of the elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA
-
Mo Y., Vaessen B., Johnston K., Marmorstein R. Structure of the elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA. Nature Struct. Biol. 7:2000;292-297.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 292-297
-
-
Mo, Y.1
Vaessen, B.2
Johnston, K.3
Marmorstein, R.4
-
14
-
-
0032884399
-
Mutants of ETS domain PU.1 and GGAA/T recognition: Free energies and kinetics
-
Pio F., Assa-Munt N., Yguerabide J., Maki R.A. Mutants of ETS domain PU. 1 and GGAA/T recognition: free energies and kinetics. Protein Sci. 8:1999;2098-2109.
-
(1999)
Protein Sci.
, vol.8
, pp. 2098-2109
-
-
Pio, F.1
Assa-Munt, N.2
Yguerabide, J.3
Maki, R.A.4
-
15
-
-
0037427446
-
Base coupling in sequence-specific site recognition by the ETS domain of murine PU.1
-
Poon G.M., Macgregor R.B. Jr. Base coupling in sequence-specific site recognition by the ETS domain of murine PU.1. J. Mol. Biol. 328:2003;805-819.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 805-819
-
-
Poon, G.M.1
Macgregor Jr., R.B.2
-
16
-
-
0027494858
-
PU.1 is a component of a multiprotein complex which binds an essential site in the murine immunoglobulin lambda 2-4 enhancer
-
Eisenbeis C.F., Singh H., Storb U. PU.1 is a component of a multiprotein complex which binds an essential site in the murine immunoglobulin lambda 2-4 enhancer. Mol. Cell. Biol. 13:1993;6452-6461.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 6452-6461
-
-
Eisenbeis, C.F.1
Singh, H.2
Storb, U.3
-
17
-
-
0037133228
-
The sequence-specific association of the ETS domain of murine PU.1 with DNA exhibits unusual energetics
-
Poon G.M., Gross P., Macgregor R.B. Jr. The sequence-specific association of the ETS domain of murine PU.1 with DNA exhibits unusual energetics. Biochemistry. 41:2002;2361-2371.
-
(2002)
Biochemistry
, vol.41
, pp. 2361-2371
-
-
Poon, G.M.1
Gross, P.2
Macgregor Jr., R.B.3
-
18
-
-
0024378717
-
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
-
Ha J.H., Spolar R.S., Record M.T. Jr. Role of the hydrophobic effect in stability of site-specific protein-DNA complexes. J. Mol. Biol. 209:1989;801-816.
-
(1989)
J. Mol. Biol.
, vol.209
, pp. 801-816
-
-
Ha, J.H.1
Spolar, R.S.2
Record Jr., M.T.3
-
19
-
-
0033536686
-
Backbone dynamics of a short PU.1 ETS domain
-
Jia X., Lee L.K., Light J., Palmer A.G. 3rd, Assa-Munt N. Backbone dynamics of a short PU.1 ETS domain. J. Mol. Biol. 292:1999;1083-1093.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 1083-1093
-
-
Jia, X.1
Lee, L.K.2
Light, J.3
Palmer III, A.G.4
Assa-Munt, N.5
-
20
-
-
0017820499
-
Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: The roles of ion association or release, screening, and ion effects on water activity
-
Record M.T. Jr, Anderson C.F., Lohman T.M. Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity. Quart. Rev. Biophys. 11:1978;103-178.
-
(1978)
Quart. Rev. Biophys.
, vol.11
, pp. 103-178
-
-
Record Jr., M.T.1
Anderson, C.F.2
Lohman, T.M.3
-
21
-
-
0030920231
-
Thermodynamics of oligoarginines binding to RNA and DNA
-
Mascotti D.P., Lohman T.M. Thermodynamics of oligoarginines binding to RNA and DNA. Biochemistry. 36:1997;7272-7279.
-
(1997)
Biochemistry
, vol.36
, pp. 7272-7279
-
-
Mascotti, D.P.1
Lohman, T.M.2
-
22
-
-
0027379588
-
Thermodynamics of single-stranded RNA and DNA interactions with oligolysines containing tryptophan. Effects of base composition
-
Mascotti D.P., Lohman T.M. Thermodynamics of single-stranded RNA and DNA interactions with oligolysines containing tryptophan. Effects of base composition. Biochemistry. 32:1993;10568-10579.
-
(1993)
Biochemistry
, vol.32
, pp. 10568-10579
-
-
Mascotti, D.P.1
Lohman, T.M.2
-
23
-
-
0026730188
-
Thermodynamics of single-stranded RNA binding to oligolysines containing tryptophan
-
Mascotti D.P., Lohman T.M. Thermodynamics of single-stranded RNA binding to oligolysines containing tryptophan. Biochemistry. 31:1992;8932-8946.
-
(1992)
Biochemistry
, vol.31
, pp. 8932-8946
-
-
Mascotti, D.P.1
Lohman, T.M.2
-
24
-
-
0028277788
-
The FLI-1 and chimeric EWS-FLI-1 oncoproteins display similar DNA binding specificities
-
Mao X., Miesfeldt S., Yang H., Leiden J.M., Thompson C.B. The FLI-1 and chimeric EWS-FLI-1 oncoproteins display similar DNA binding specificities. J. Biol. Chem. 269:1994;18216-18222.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18216-18222
-
-
Mao, X.1
Miesfeldt, S.2
Yang, H.3
Leiden, J.M.4
Thompson, C.B.5
-
25
-
-
0028801386
-
The ETS-domain transcription factors Elk-1 and SAP-1 exhibit differential DNA binding specificities
-
Shore P., Sharrocks A.D. The ETS-domain transcription factors Elk-1 and SAP-1 exhibit differential DNA binding specificities. Nucl. Acids Res. 23:1995;4698-4706.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 4698-4706
-
-
Shore, P.1
Sharrocks, A.D.2
-
26
-
-
0031576995
-
Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: Effects of converting a consensus site to a non-specific site
-
Frank D.E., Saecker R.M., Bond J.P., Capp M.W., Tsodikov O.V., Melcher S.E., et al. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site. J. Mol. Biol. 267:1997;1186-1206.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1186-1206
-
-
Frank, D.E.1
Saecker, R.M.2
Bond, J.P.3
Capp, M.W.4
Tsodikov, O.V.5
Melcher, S.E.6
-
28
-
-
10144255103
-
New insights on DNA recognition by ets proteins from the crystal structure of the PU.1 ETS domain-DNA complex
-
Pio F., Kodandapani R., Ni C.Z., Shepard W., Klemsz M., McKercher S.R., et al. New insights on DNA recognition by ets proteins from the crystal structure of the PU.1 ETS domain-DNA complex. J. Biol. Chem. 271:1996;23329-23337.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 23329-23337
-
-
Pio, F.1
Kodandapani, R.2
Ni, C.Z.3
Shepard, W.4
Klemsz, M.5
Mckercher, S.R.6
-
29
-
-
2542609960
-
Helix bending as a factor in protein/DNA recognition
-
Dickerson R.E., Chiu T.K. Helix bending as a factor in protein/DNA recognition. Biopolymers. 44:1997;361-403.
-
(1997)
Biopolymers
, vol.44
, pp. 361-403
-
-
Dickerson, R.E.1
Chiu, T.K.2
-
30
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar R.S., Record M.T. Jr. Coupling of local folding to site-specific binding of proteins to DNA. Science. 263:1994;777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record Jr., M.T.2
-
31
-
-
0032515936
-
Hydroxyl radical footprinting of DNA complexes of the ets domain of PU.1 and its comparison to the crystal structure
-
Gross P., Arrowsmith C.H., Macgregor R.B. Jr. Hydroxyl radical footprinting of DNA complexes of the ets domain of PU.1 and its comparison to the crystal structure. Biochemistry. 37:1998;5129-5135.
-
(1998)
Biochemistry
, vol.37
, pp. 5129-5135
-
-
Gross, P.1
Arrowsmith, C.H.2
Macgregor Jr., R.B.3
-
32
-
-
0344193601
-
Quantitative hydroxyl radical footprinting reveals cooperative interactions between DNA-binding subdomains of PU.1 and IRF4
-
Gross P., Yee A.A., Arrowsmith C.H., Macgregor R.B. Jr. Quantitative hydroxyl radical footprinting reveals cooperative interactions between DNA-binding subdomains of PU.1 and IRF4. Biochemistry. 37:1998;9802-9811.
-
(1998)
Biochemistry
, vol.37
, pp. 9802-9811
-
-
Gross, P.1
Yee, A.A.2
Arrowsmith, C.H.3
Macgregor Jr., R.B.4
-
33
-
-
0034868445
-
NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding
-
Stone M.J. NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding. Accts Chem. Res. 34:2001;379-388.
-
(2001)
Accts Chem. Res.
, vol.34
, pp. 379-388
-
-
Stone, M.J.1
-
34
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
Sturtevant J.M. Heat capacity and entropy changes in processes involving proteins. Proc. Natl Acad. Sci. USA. 74:1977;2236-2240.
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
35
-
-
0038309550
-
Protein stability induced by ligand binding correlates with changes in protein flexibility
-
Celej M.S., Montich G.G., Fidelio G.D. Protein stability induced by ligand binding correlates with changes in protein flexibility. Protein Sci. 12:2003;1496-1506.
-
(2003)
Protein Sci.
, vol.12
, pp. 1496-1506
-
-
Celej, M.S.1
Montich, G.G.2
Fidelio, G.D.3
-
36
-
-
0030736323
-
Protein-DNA recognition complexes: Conservation of structure and binding energy in the transition state
-
Jen-Jacobson L. Protein-DNA recognition complexes: conservation of structure and binding energy in the transition state. Biopolymers. 44:1997;153-180.
-
(1997)
Biopolymers
, vol.44
, pp. 153-180
-
-
Jen-Jacobson, L.1
-
37
-
-
0035957083
-
Site-specific cation binding mediates TATA binding protein-DNA interaction from a hyperthermophilic archaeon
-
Bergqvist S., O'Brien R., Ladbury J.E. Site-specific cation binding mediates TATA binding protein-DNA interaction from a hyperthermophilic archaeon. Biochemistry. 40:2001;2419-2425.
-
(2001)
Biochemistry
, vol.40
, pp. 2419-2425
-
-
Bergqvist, S.1
O'brien, R.2
Ladbury, J.E.3
-
38
-
-
0032577337
-
The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon
-
O'Brien R., DeDecker B., Fleming K.G., Sigler P.B., Ladbury J.E. The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon. J. Mol. Biol. 279:1998;117-125.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 117-125
-
-
O'brien, R.1
Dedecker, B.2
Fleming, K.G.3
Sigler, P.B.4
Ladbury, J.E.5
-
39
-
-
0342656167
-
Characterization of sequence-specific DNA binding by the transcription factor Oct-1
-
Lundback T., Chang J.F., Phillips K., Luisi B., Ladbury J.E. Characterization of sequence-specific DNA binding by the transcription factor Oct-1. Biochemistry. 39:2000;7570-7579.
-
(2000)
Biochemistry
, vol.39
, pp. 7570-7579
-
-
Lundback, T.1
Chang, J.F.2
Phillips, K.3
Luisi, B.4
Ladbury, J.E.5
-
40
-
-
0032557719
-
Calorimetric studies of E. coli SSB protein-single-stranded DNA interactions. Effects of monovalent salts on binding enthalpy
-
Kozlov A.G., Lohman T.M. Calorimetric studies of E. coli SSB protein-single-stranded DNA interactions. Effects of monovalent salts on binding enthalpy. J. Mol. Biol. 278:1998;999-1014.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 999-1014
-
-
Kozlov, A.G.1
Lohman, T.M.2
-
41
-
-
0033780671
-
Large contributions of coupled protonation equilibria to the observed enthalpy and heat capacity changes for ssDNA binding to Escherichia coli SSB protein
-
Kozlov A.G., Lohman T.M. Large contributions of coupled protonation equilibria to the observed enthalpy and heat capacity changes for ssDNA binding to Escherichia coli SSB protein. Proteins: Struct. Funct. Genet. 4:2000;8-22.
-
(2000)
Proteins: Struct. Funct. Genet.
, vol.4
, pp. 8-22
-
-
Kozlov, A.G.1
Lohman, T.M.2
-
42
-
-
0029933128
-
A highly salt-dependent enthalpy change for Escherichia coli SSB protein-nucleic acid binding due to ion-protein interactions
-
Lohman T.M., Overman L.B., Ferrari M.E., Kozlov A.G. A highly salt-dependent enthalpy change for Escherichia coli SSB protein-nucleic acid binding due to ion-protein interactions. Biochemistry. 35:1996;5272-5279.
-
(1996)
Biochemistry
, vol.35
, pp. 5272-5279
-
-
Lohman, T.M.1
Overman, L.B.2
Ferrari, M.E.3
Kozlov, A.G.4
-
43
-
-
0000410374
-
Thermodynamics of the DNA binding reaction of transcription factor MASH-1
-
Kunne A.G., Sieber M., Meierhans D., Allemann R.K. Thermodynamics of the DNA binding reaction of transcription factor MASH-1. Biochemistry. 37:1998;4217-4223.
-
(1998)
Biochemistry
, vol.37
, pp. 4217-4223
-
-
Kunne, A.G.1
Sieber, M.2
Meierhans, D.3
Allemann, R.K.4
-
44
-
-
0035816212
-
Specific and non-specific interactions of integration host factor with DNA: Thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding
-
Holbrook J.A., Tsodikov O.V., Saecker R.M., Record M.T. Jr. Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding. J. Mol. Biol. 310:2001;379-401.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 379-401
-
-
Holbrook, J.A.1
Tsodikov, O.V.2
Saecker, R.M.3
Record Jr., M.T.4
|