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6844237880
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note
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In DNA dissociation experiments with the minimal fragments used in this study, GABPα dissociated with a half-life of less than 4 s, whereas the half-life of GABPα/β was ∼400 S.
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19
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20
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6844225726
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note
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Two GABPβ genes have been identified, GABPβ1 and GABPβ2 (19). In this study we used GABPβ1. Residues 311 to 430 of GABPα and 1 to 157 of GABPβ expressed as precipitates in E. coli. The proteins were codialyzed from 8 M urea, purified as a complex by anion- and cation-exchange chromatography, and concentrated to 8 mg/ml. Purified AATGACCGGAAGTACACCGGA and TTCCGGTGTACTTCCGGTCAT 21-base oligonucleotides were added to protein in slight molar excess and dialyzed into 20 mM tris (pH 8), 1 mM EDTA, 1 mM dithiothreitol, and 0.001% sodium azide. Equal volumes of protein-DNA solution and well solution [100 mM bis-tris propane (pH 9), 5 mM cobaltic hexamine chloride, 9% polyethylene glycol (PEG) 1000] were mixed, and hanging drops were allowed to equilibrate by vapor diffusion at 20°C. Crystals were transferred into cryosolutions containing well solution with 12% PEG 1000 and 24% glycerol. Optimal diffraction was obtained if crystals were cross-linked by exposure to glutaraldehyde vapor for 10 min. For the 2Hg derivative, a cross-linked crystal was soaked in 1 mM EMTS (ethylmercurithiosalicylate) for 24 hours.
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22
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6844257000
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note
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Ets-1 fragments ΔN331 or ΔN280 (31) did not interact with GABPβ 1 or 2 in electrophoretic mobility-shift assays when mixed or codialyzed from 8 M urea.
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26
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6844262741
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note
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418 results in a steric clash with neighboring hydrophobic residues.
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27
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0024058085
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Curvature of the DNA was calculated for the 9 bp contacting GABPα with the program CURVES; R. Lavery and H. Sklenar, J. Biomol. Struct. Dyn. 6, 63 (1988).
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6844233838
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note
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We thank S. Soisson and E. Reisinger for continuous assistance; S. Prigge, D. Hammontree, and D. Leahy for programs; M. Bianchet and M. Amzel for x-ray room assistance; C. Ogata for beamline assistance; N. Pavletich for 53BP2 coordinates; and B. Graves for Ets-1 samples. This work was initiated during a sabbatical visit by S.L.M. in the laboratory of C.W. At that time S.L.M. was supported by the Carnegie Institute of Washington and the Howard Hughes Medical Institute. A.H.B., D.E.P., and C.W. were supported by the Howard Hughes Medical Institute. C.W. also received support from the David and Lucile Packard Foundation. Coordinates have been deposited at the Brookhaven Protein Data Bank (accession code 1 awc).
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