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1842278307
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2, 0.01% NP-40, and 10% glycerol] at 4°C for 1 hour, and then washed five times with 200 μl of the same buffer. The samples were dissolved in SDS-polyacrylamide gel electrophoresis (PAGE) loading buffer and analyzed by SDS-PAGE.
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24
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1842388046
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note
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1-140 dissolved in the same buffer. All NMR experiments were carried out at 300 K on a Bruker DMX500 spectrometer equipped with a z-shielded gradient triple resonance probe. Quadrature detection in the indirectly detected dimensions was achieved with the time-proportional phase incrementation (TPPI) method. The data were processed with the FELIX software (Biosym Technologies) with appropriate apodization, baseline correction, and zero-filling to yield real 2D 2K × 2K or 3D 512 × 256 × 128 matrices after reduction.
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25
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45149137348
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15N heteronuclear multiple-quantum coherence J-resolved (HMQC-J) spectrum [L. E. Kay and A. Bax, J. Magn. Reson. 86, 110 (1990)].
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1842379330
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note
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C alone at 6°C in buffer containing 50 mM phosphate buffer (pH 7.0) and 50 mM NaCl was characteristic for a random-coil structure.
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27
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1842395805
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note
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D.
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28
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0025341339
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15N-edited total correlation spectroscopy (TOCSY)-HSQC; and HN(CO)CA, HNCA, and HCCH-TOCSY [M. Ikura, L. E. Kay, A. Bax, Biochemistry 29, 4659 (1990); L. E. Kay, M. Ikura, R. Tschudin, A. Bax, J. Magn. Reson. 89, 496 (1990); S. Grzesiek and A. Bax, ibid. 96, 432 (1992); A. Bax, G. M. Clore, A. M. Gronenbom, ibid. 88, 425 (1990); L. E. Kay, G. Xu, A. U. Singer, R. Muhandiram, J. D. Forman-Kay, ibid. 6101, 333 (1993)].
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44949291986
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15N-edited total correlation spectroscopy (TOCSY)-HSQC; and HN(CO)CA, HNCA, and HCCH-TOCSY [M. Ikura, L. E. Kay, A. Bax, Biochemistry 29, 4659 (1990); L. E. Kay, M. Ikura, R. Tschudin, A. Bax, J. Magn. Reson. 89, 496 (1990); S. Grzesiek and A. Bax, ibid. 96, 432 (1992); A. Bax, G. M. Clore, A. M. Gronenbom, ibid. 88, 425 (1990); L. E. Kay, G. Xu, A. U. Singer, R. Muhandiram, J. D. Forman-Kay, ibid. 6101, 333 (1993)].
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44049117010
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15N-edited total correlation spectroscopy (TOCSY)-HSQC; and HN(CO)CA, HNCA, and HCCH-TOCSY [M. Ikura, L. E. Kay, A. Bax, Biochemistry 29, 4659 (1990); L. E. Kay, M. Ikura, R. Tschudin, A. Bax, J. Magn. Reson. 89, 496 (1990); S. Grzesiek and A. Bax, ibid. 96, 432 (1992); A. Bax, G. M. Clore, A. M. Gronenbom, ibid. 88, 425 (1990); L. E. Kay, G. Xu, A. U. Singer, R. Muhandiram, J. D. Forman-Kay, ibid. 6101, 333 (1993)].
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44949288628
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15N-edited total correlation spectroscopy (TOCSY)-HSQC; and HN(CO)CA, HNCA, and HCCH-TOCSY [M. Ikura, L. E. Kay, A. Bax, Biochemistry 29, 4659 (1990); L. E. Kay, M. Ikura, R. Tschudin, A. Bax, J. Magn. Reson. 89, 496 (1990); S. Grzesiek and A. Bax, ibid. 96, 432 (1992); A. Bax, G. M. Clore, A. M. Gronenbom, ibid. 88, 425 (1990); L. E. Kay, G. Xu, A. U. Singer, R. Muhandiram, J. D. Forman-Kay, ibid. 6101, 333 (1993)].
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15N-edited total correlation spectroscopy (TOCSY)-HSQC; and HN(CO)CA, HNCA, and HCCH-TOCSY [M. Ikura, L. E. Kay, A. Bax, Biochemistry 29, 4659 (1990); L. E. Kay, M. Ikura, R. Tschudin, A. Bax, J. Magn. Reson. 89, 496 (1990); S. Grzesiek and A. Bax, ibid. 96, 432 (1992); A. Bax, G. M. Clore, A. M. Gronenbom, ibid. 88, 425 (1990); L. E. Kay, G. Xu, A. U. Singer, R. Muhandiram, J. D. Forman-Kay, ibid. 6101, 333 (1993)].
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1842305175
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note
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Chemical shifts of the β protons were determined by NOESY-HSQC and TOCSY-HSQC experiments.
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34
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1842286110
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note
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Protein-protein interaction assays were performed as in (9).
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35
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0024330470
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2, 50 mM KCl, 10 mM ammonium sulfate, 1% polyethylene glycol, 0.2 mM PMSF, and bovine serum albumin (100 μg/ml). Transcription was initiated by adding 0.5 mM ribonucleotides and was then allowed to proceed for 30 min at 30°C. After primer extension [B. D. Dynlacht, T. Holey, R. Tjian, Cell 55, 563 (1991)], the products were resolved on a 10% denaturing gel. The DNA binding activities of the GAL4 derivatives were verified by gel electrophoretic mobility shift assays.
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0026091129
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2, 50 mM KCl, 10 mM ammonium sulfate, 1% polyethylene glycol, 0.2 mM PMSF, and bovine serum albumin (100 μg/ml). Transcription was initiated by adding 0.5 mM ribonucleotides and was then allowed to proceed for 30 min at 30°C. After primer extension [B. D. Dynlacht, T. Holey, R. Tjian, Cell 55, 563 (1991)], the products were resolved on a 10% denaturing gel. The DNA binding activities of the GAL4 derivatives were verified by gel electrophoretic mobility shift assays.
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Dynlacht, B.D.1
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38
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1842285159
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note
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1-140 were 3 mM and 0.3 mM, respectively. The sequential assignment was obtained by TOCSY, double-quantum filtered correlation spectroscopy (DQFCOSY), and NOESY. In the NOESY spectra, 512 free induction decays were collected with a 5000-Hz sweep width and 2048 points in the F2 dimension, and the spectra were recorded at 300 K with mixing times of 100, 200, and 350 ms.
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39
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0023500809
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These observations lend credence to an early suggestion that acidic activation domains are α-helical when bound to their targets [E. Giniger and M. Rashne, Nature 330, 670 (1987)].
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46
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1842347361
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note
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We thank B. Dynlacht and J. Ross for helpful advice on transcription assays and S. Wolfe and P. Zhou for discussion about the NMR results. Supported in part by a grant from the Hoffman-La Roche Institute of Chemistry and Medicine and an NSF Presidential Young Investigator Award (G.L.V.); the Leukemia Society of America and the Naito Foundation (M.U.); and the Swiss National Foundation of Scientific Research (O.N.). The NMR spectrometer used in this work was purchased with funding from NSF (CHE93-12233).
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