-
1
-
-
0003576795
-
-
#584 University of California, Berkeley
-
Yang, Y. H., Buckley, M. J., Dudoit, S., Speed, T. P. "Comparison of methods for image analysis on cDNA microarray data" #584 (University of California, Berkeley, 2000). http://www.stat.Berkeley.EDU/users/terry/zarray/Html/papersindex.html.
-
(2000)
"Comparison of Methods for Image Analysis on CDNA Microarray Data"
-
-
Yang, Y.H.1
Buckley, M.J.2
Dudoit, S.3
Speed, T.P.4
-
2
-
-
0004278772
-
-
Stanford University
-
Eisen, M. "Scanalyze user manual" (Stanford University, 1999) http://rana.lbl.gov/manuals/ScanAlyzeDoc.pdf.
-
(1999)
"Scanalyze User Manual"
-
-
Eisen, M.1
-
4
-
-
0033664358
-
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
-
Selinger, D. W., Cheung, K. J., Mei, R., Johansson, E. M., Richmond, C. S., Blattner, F. R., Lockhart, D. J., Church, G. M. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nat. Biotechnol., 2000, 18: 1262-8.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1262-1268
-
-
Selinger, D.W.1
Cheung, K.J.2
Mei, R.3
Johansson, E.M.4
Richmond, C.S.5
Blattner, F.R.6
Lockhart, D.J.7
Church, G.M.8
-
5
-
-
0003812858
-
-
#578 (University of California, Berkeley
-
Dudoit, S., Yang, Y. H., Callow, M. J., Speed, T. P. "Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments" #578 (University of California, Berkeley, 2000) http://www.stat.berkeley.edu/users/terry/zarray/Html/papersindex.html.
-
(2000)
"Statistical Methods for Identifying Differentially Expressed Genes in Replicated CDNA Microarray Experiments"
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
6
-
-
0003758190
-
"Estimating the posterior probability of differential gene expression from microarray data"
-
The Jackson Laboratory
-
Sapir, M., Churchill, G. "Estimating the posterior probability of differential gene expression from microarray data" (The Jackson Laboratory, 2000) http://www.jax.org/research/churchill/pubs/index.html.
-
(2000)
-
-
Sapir, M.1
Churchill, G.2
-
7
-
-
0038454225
-
-
Modern Applied Statistics with S-PLUS (Springer)
-
Venables, W. N., Ripley, B. D. Modern applied statistics with S-PLUS (Springer, 1999).
-
(1999)
-
-
Venables, W.N.1
Ripley, B.D.2
-
8
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng, G. C., Oh, M. K., Rohlin, L., Liao, J. C., Wong, W.,H. Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res., 2001, 29: 2549-57.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
9
-
-
0034656561
-
Normalization strategies for cDNA microarrays
-
Schuchhardt, J., Beule, D., Malik, A., Wolski, E., Eickhoff, H. Lehrach, H. Herzel, H. Normalization strategies for cDNA microarrays. Nucleic Acids Res., 2000, 28: E47.
-
(2000)
Nucleic Acids Res.
, vol.28
-
-
Schuchhardt, J.1
Beule, D.2
Malik, A.3
Wolski, E.4
Eickhoff, H.5
Lehrach, H.6
Herzel, H.7
-
10
-
-
0003576793
-
-
SPIE BiOS, San Jose, California
-
Yang, Y. H., Dudoit, S., Luu, P., Speed, T. P. Normalization for cDNA Microarray Data, SPIE BiOS, San Jose, California 2001) http://www.stat.berkeley.edu/users/terry/zarray/Html/papersindex.html.
-
(2001)
Normalization for CDNA Microarray Data
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Speed, T.P.4
-
11
-
-
0034518156
-
Processing and quality control of DNA array hybridization data
-
Beissbarth, T., Fellenberg, K., Brors, B., Arribas-Prat, R., Boer, J. M., Hauser, N. C., Scheideler, M., Hoheisel, J. D., Schutz, G., Poustka, A., Vingron, M. Processing and quality control of DNA array hybridization data. Bioinformatics, 2000, 16: 1014-1022.
-
(2000)
Bioinformatics
, vol.16
, pp. 1014-1022
-
-
Beissbarth, T.1
Fellenberg, K.2
Brors, B.3
Arribas-Prat, R.4
Boer, J.M.5
Hauser, N.C.6
Scheideler, M.7
Hoheisel, J.D.8
Schutz, G.9
Poustka, A.10
Vingron, M.11
-
12
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes, T. R., Marton, M. J., Jones, A. R., Roberts, C. J., Stoughton, R., Armour, C. D., Bennett, H. A., Coffey, E., Dai, H., He, Y. D., Kidd, M. J., King, A. M., Meyer, M. R., Slade, D., Lum, P. Y., Stepaniants, S. B., Shoemaker, D. D., Gachotte, D., Chakraburtty, K., Simon, J., Bard, M., Friend, S. H. Functional discovery via a compendium of expression profiles. Cell, 2000, 102: 109-26.
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dai, H.9
He, Y.D.10
Kidd, M.J.11
King, A.M.12
Meyer, M.R.13
Slade, D.14
Lum, P.Y.15
Stepaniants, S.B.16
Shoemaker, D.D.17
Gachotte, D.18
Chakraburtty, K.19
Simon, J.20
Bard, M.21
Friend, S.H.22
more..
-
13
-
-
0034564270
-
Robust parametric and semi-parametric spot fitting for spot array images
-
Brandle, N., Chen, H. Y., Bischof, H., Lapp, H. Robust parametric and semi-parametric spot fitting for spot array images. Ismb, 2000, 8: 46-56.
-
(2000)
Ismb
, vol.8
, pp. 46-56
-
-
Brandle, N.1
Chen, H.Y.2
Bischof, H.3
Lapp, H.4
-
14
-
-
0035979269
-
Image metrics in the statistical analysis of DNA microarray data
-
Brown, C. S., Goodwin, P. C., Sorger, P. K. Image metrics in the statistical analysis of DNA microarray data. Proc. Natl. Acad. Sci. USA, 2001, 98: 8944-9.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8944-8949
-
-
Brown, C.S.1
Goodwin, P.C.2
Sorger, P.K.3
-
15
-
-
0036892039
-
Antipsychotic drug treatment induces differential gene expression in the rat cortex
-
Kontkanen, O., Toronen, P., Lakso, M. Wong. G. Castren, E. Antipsychotic drug treatment induces differential gene expression in the rat cortex. J. Neurochem., 2002, 83: 1043-53.
-
(2002)
J. Neurochem.
, vol.83
, pp. 1043-1053
-
-
Kontkanen, O.1
Toronen, P.2
Lakso, M.3
Wong, G.4
Castren, E.5
-
16
-
-
0036808741
-
Expression Profiling to Understand Actions of NMDA/Glutamate Receptor Antagonists in Rat Brain
-
Törönen, P., Storvik, M., Lindén, A.-M., Kontkanen, O., Marvanová, M., Lakso, M., Castrén, E., Wong, G. Expression Profiling to Understand Actions of NMDA/Glutamate Receptor Antagonists in Rat Brain. Neurochemical Research, 2002, 27: 1209-1220.
-
(2002)
Neurochemical Research
, vol.27
, pp. 1209-1220
-
-
Törönen, P.1
Storvik, M.2
Lindén, A.-M.3
Kontkanen, O.4
Marvanová, M.5
Lakso, M.6
Castrén, E.7
Wong, G.8
-
17
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton, M. A., Kendziorski, C. M., Richmond, C. S., Blattner, F. R., Tsui, K. W. On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J. Comput. Biol., 2001, 8: 37-52.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
18
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t -test and statistical inferences of gene changes
-
Baldi, P., Long, A. D. A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes. Bioinformatics, 2001, 17: 509-19.,
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
19
-
-
2542422424
-
Replicated Microarray Data
-
Statistical Sinica. Accepted
-
Lonnstedt, I., Speed, T. P. Replicated Microarray Data. Statistical Sinica. Accepted.
-
-
-
Lonnstedt, I.1
Speed, T.P.2
-
20
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D. J., Dong, H., Byrne, M., CFollettie, M. T., Gallo, M. V., Chee, M. S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H., Brown, E. L. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol., 1996, 14: 1675-80.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.3
CFollettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
21
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon, U., Barkai, N., Notterman, D. A., Gish, K., Ybarra, S., Mack, D., Levine, A. J. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci. USA, 1999, 96: 6745-50.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
22
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li, C., Wong, W. H. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl. Acad Sci. USA, 2001, 98: 31-36.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
23
-
-
0031915896
-
Large-scale temporal gene expression mapping of central nervous system development
-
Wen, X., Fuhrman, S., Michaels, G. S., Carr, D. B., Smith, S., Barker, J. L., Somogyi, R. Large-scale temporal gene expression mapping of central nervous system development. Proc. Natl. Acad. Sci. USA, 1998, 95: 334-9.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 334-339
-
-
Wen, X.1
Fuhrman, S.2
Michaels, G.S.3
Carr, D.B.4
Smith, S.5
Barker, J.L.6
Somogyi, R.7
-
24
-
-
0042863923
-
Analysis of gene expression data using self-organizing maps
-
Toronen, P., Kolehmainen, M., Wong, G., Castren, E. Analysis of gene expression data using self-organizing maps. FEBS Lett., 1999, 451: 142-6.
-
(1999)
FEBS Lett.
, vol.451
, pp. 142-146
-
-
Toronen, P.1
Kolehmainen, M.2
Wong, G.3
Castren, E.4
-
25
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown, M. P., Grundy, W. N., Lin, D., Cristianini, N., Sugnet, C. W., Furey, T. S., Ares, Jr. M., Haussler, D. Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl. Acad. Sci. USA, 2000, 97: 262-7.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares M., Jr.7
Haussler, D.8
-
26
-
-
0032413411
-
Predicting gene regulatory elements in silico on a genomic scale
-
Brazma, A., Jonassen, I., Vilo, J., Ukkonen, E. Predicting gene regulatory elements in silico on a genomic scale. Genome Res., 1998, 8: 1202-15.
-
(1998)
Genome Res.
, vol.8
, pp. 1202-1215
-
-
Brazma, A.1
Jonassen, I.2
Vilo, J.3
Ukkonen, E.4
-
27
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M. B., Spellman, P. T., Brown, P. O., Botstein. D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 1998, 95: 14863-8.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
28
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E. S., Golub, T. R. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. USA, 1999, 96: 2907-12.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
29
-
-
0032729435
-
Exploring expression data: Identification and analysis of coexpressed genes
-
Heyer, L. J., Kruglyak, S., Yooseph, S. Exploring expression data: identification and analysis of coexpressed genes. Genome Res., 1999, 9: 1106-15.
-
(1999)
Genome Res.
, vol.9
, pp. 1106-1115
-
-
Heyer, L.J.1
Kruglyak, S.2
Yooseph, S.3
-
30
-
-
0034564271
-
Analysis of gene expression microarrays for phenotype classification
-
Califano, A., Stolovitzky, G., Tu, Y. Analysis of gene expression microarrays for phenotype classification. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2000, 8: 75-85.
-
(2000)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.8
, pp. 75-85
-
-
Califano, A.1
Stolovitzky, G.2
Tu, Y.3
-
31
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., Bloomfield, C. D., Lander, E. S. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science, 1999, 286: 531-7.
-
(1999)
Science
, vol.286
, pp. 531-557
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
32
-
-
0033637841
-
Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex
-
Mirnics, K., Middleton, F. A., Marquez, A., Lewis, D. A., Levitt, P. Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex. Neuron, 2000, 28: 53-67.
-
(2000)
Neuron
, vol.28
, pp. 53-67
-
-
Mirnics, K.1
Middleton, F.A.2
Marquez, A.3
Lewis, D.A.4
Levitt, P.5
-
33
-
-
0037103997
-
Synexpression analysis of ESTs in the rat brain reveals distinct patterns and potential drug targets
-
Marvanova, M., Toronen, P., Storvik, M., Lakso, M., Castren, E., Wong, G. Synexpression analysis of ESTs in the rat brain reveals distinct patterns and potential drug targets. Brain. Res. Mol. Brain Res., 2002, 104: 176.
-
(2002)
Brain Res. Mol. Brain Res.
, vol.104
, pp. 176
-
-
Marvanova, M.1
Toronen, P.2
Storvik, M.3
Lakso, M.4
Castren, E.5
Wong, G.6
-
34
-
-
0004140078
-
-
UW-CSE-01-03-02 (University of Washington Department of Computer Science and Engineering
-
Fasulo, D. "An analysis of recent work on clustering algorithms" UW-CSE-01-03-02 (University of Washington Department of Computer Science and Engineering, 1999) http://www.cs.washington.edu/homes/dfasulo/clustering.ps
-
(1999)
"An Analysis of Recent Work on Clustering Algorithms"
-
-
Fasulo, D.1
-
35
-
-
0141498446
-
Algorithmic Approaches to Clustering Gene Expression Data
-
T.Jiang, T. S., Xu, Y., Zhang, M. Q. Ed., MIT Press
-
Shamir, R., Sharan, R. Algorithmic Approaches to Clustering Gene Expression Data. T.Jiang, T. S., Xu, Y., Zhang, M. Q. Ed., Current Topics in Computational Biology (MIT Press).
-
Current Topics in Computational Biology
-
-
Shamir, R.1
Sharan, R.2
-
38
-
-
0345580221
-
Large-scale clustering of cDNA-fingerprinting data
-
Herwig, R., Poustka, A. J., Muller, C., Bull, C., Lehrach, H., O'Brien, J. Large-scale clustering of cDNA-fingerprinting data. Genome Res., 1999, 9: 1093-105.
-
(1999)
Genome Res.
, vol.9
, pp. 1093-1105
-
-
Herwig, R.1
Poustka, A.J.2
Muller, C.3
Bull, C.4
Lehrach, H.5
O'Brien, J.6
-
40
-
-
0038114865
-
-
Proceedings of SSGRR 2000, L'Aquila
-
Kaski, S., Nikkilä, J., Kohonen, T. Methods for exploratory cluster analysis, In Proceedings of SSGRR 2000, L'Aquila, 2000, http://www.cis.hut.fi/sami/publications.html.
-
(2000)
Methods for Exploratory Cluster Analysis
-
-
Kaski, S.1
Nikkilä, J.2
Kohonen, T.3
-
41
-
-
0002087501
-
Methods for interpreting a self-organized map in data analysis
-
Proceedings of ESANN'98. Bruges
-
Kaski, S., Nikkilä, J., Kohonen, T. Methods for interpreting a self-organized map in data analysis. Proceedings of ESANN'98. Bruges. 1998, http://www.cis.hut.fi/sami/publications.html.
-
(1998)
-
-
Kaski, S.1
Nikkilä, J.2
Kohonen, T.3
-
42
-
-
0021404166
-
Mixture densities, maximum likelihood and the em algorithm
-
Redner, R., Walker, H. Mixture densities, maximum likelihood and the em algorithm. SIAM Review, 1984, 26(2), 195-239.
-
(1984)
SIAM Review
, vol.26
, Issue.2
, pp. 195-239
-
-
Redner, R.1
Walker, H.2
-
43
-
-
0032269108
-
How many clusters? Which clustering method? - Answers via Model-Based Cluster Analysis
-
Fraley, C., Raftery, A. E. How many clusters? Which clustering method? - Answers via Model-Based Cluster Analysis. Computer Journal, 1998, 41: 578-588.
-
(1998)
Computer Journal
, vol.41
, pp. 578-588
-
-
Fraley, C.1
Raftery, A.E.2
-
44
-
-
0036791318
-
Analysis and visualization of gene expression data using Self-Organizing Maps
-
Nikkila, J., Toronen, P., Kaski, S., Venna, J., Castren, E., Wong, G. Analysis and visualization of gene expression data using Self-Organizing Maps. Neural Netw., 2002, 15: 953-66.
-
(2002)
Neural Netw.
, vol.15
, pp. 953-966
-
-
Nikkila, J.1
Toronen, P.2
Kaski, S.3
Venna, J.4
Castren, E.5
Wong, G.6
-
45
-
-
0035024021
-
Validating clustering for gene expression data
-
Yeung, K. Y., Haynor, D. R., Ruzzo, W. L. Validating clustering for gene expression data. Bioinformatics, 2001, 17: 309-18.
-
(2001)
Bioinformatics
, vol.17
, pp. 309-318
-
-
Yeung, K.Y.1
Haynor, D.R.2
Ruzzo, W.L.3
-
46
-
-
0032728081
-
Clustering gene expression patterns
-
Ben-Dor, A., Shamir, R., Yakhini, Z. Clustering gene expression patterns. J. Comput. Biol., 1999, 6: 281-97.
-
(1999)
J. Comput. Biol.
, vol.6
, pp. 281-297
-
-
Ben-Dor, A.1
Shamir, R.2
Yakhini, Z.3
-
47
-
-
0033746670
-
Superparamagnetic clustering of yeast gene expression profiles
-
Getz, G., Levine, E., Domany, E., Zhang, M. Q. Superparamagnetic clustering of yeast gene expression profiles. Physica. A., 2000, 279: 457-64.
-
(2000)
Physica. A.
, vol.279
, pp. 457-464
-
-
Getz, G.1
Levine, E.2
Domany, E.3
Zhang, M.Q.4
-
48
-
-
0034565041
-
CLICK. a clustering algorithm with applications to gene expression analysis
-
Sharan, R., Shamir, R. CLICK. a clustering algorithm with applications to gene expression analysis. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2000, 8: 307-16.
-
(2000)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.8
, pp. 307-316
-
-
Sharan, R.1
Shamir, R.2
-
49
-
-
0000521616
-
Superparamagnetic clustering of data
-
Blatt, M., Wiseman, S., Domany, E. Superparamagnetic clustering of data. Physical Review Letters, 1996, 76: 3251-3254.
-
(1996)
Physical Review Letters
, vol.76
, pp. 3251-3254
-
-
Blatt, M.1
Wiseman, S.2
Domany, E.3
-
50
-
-
0034710876
-
Coupled two-way clustering analysis of gene microarray data
-
Getz, G., Levine, E., Domany, E. Coupled two-way clustering analysis of gene microarray data. Proc. Natl. Acad. Sci. USA, 2000, 97: 12079-84.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12079-12084
-
-
Getz, G.1
Levine, E.2
Domany, E.3
-
51
-
-
0034098727
-
Systematic management and analysis of yeast gene expression data
-
Aach, J., Rindone, W., Church, G. M. Systematic management and analysis of yeast gene expression data. Genome. Res., 2000, 10: 431-45.
-
(2000)
Genome Res.
, vol.10
, pp. 431-445
-
-
Aach, J.1
Rindone, W.2
Church, G.M.3
-
52
-
-
0035108235
-
A hierarchical unsupervised growing neural network for clustering gene expression patterns
-
Herrero, J., Valencia, A., Dopazo, J. A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics, 2001, 17: 126-136.
-
(2001)
Bioinformatics
, vol.17
, pp. 126-136
-
-
Herrero, J.1
Valencia, A.2
Dopazo, J.3
-
53
-
-
84944038416
-
-
Leung, K.S., Chan, L -W., Meng, H. Ed., Proceedings of IDEAL 2000, Second International Conference on Intelligent Data Engineering and Automated Learning, (Springer, Berlin
-
Sinkkonen, J., Kaski, S Clustering by Similarity in an Auxiliary Space, In: Leung, K.S., Chan, L -W., Meng, H. Ed., Proceedings of IDEAL 2000, Second International Conference on Intelligent Data Engineering and Automated Learning, pg. 3-8 (Springer, Berlin, 2000) http://www.cis.hut.fi/sami/publications.html
-
(2000)
Clustering By Similarity in an Auxiliary Space
, pp. 3-8
-
-
Sinkkonen, J.1
Kaski, S.2
-
55
-
-
0033671736
-
The emergence of pattern discovery techniques in computational biology
-
Rigoutsos, I., Floratos, A., Parida, L., Gao, Y., Platt, D. The emergence of pattern discovery techniques in computational biology. Metab. Eng., 2000, 2: 159-77.
-
(2000)
Metab. Eng.
, vol.2
, pp. 159-177
-
-
Rigoutsos, I.1
Floratos, A.2
Parida, L.3
Gao, Y.4
Platt, D.5
-
56
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh, A. A., Eisen, M. B., Davis, R. E., Ma, C., Lossos, I. S., Rosenwald, A., Boldrick, J. C., Sabet, H., Tran, T., Yu, X., Powell, J. I., Yang, L., Marti, G. E., Moore, T., Hudson, J., Lu, Jr. L., Lewis, D. B., Tibshirani, R., Sherlock, G., Chan, W. C., Greiner, T. C., Weisenburger, D. D., Armitage J. O., Warnke, R., Staudt, L. M. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature, 2000, 403: 503-11.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson, J.15
Lu L., Jr.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Staudt, L.M.25
more..
-
57
-
-
0036649020
-
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
-
Wu, L. F., Hughes, T. R., Davierwala, A. P., Robinson, M. D., Stoughton, R., Altschuler, S. J. Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat. Genet., 2002, 31: 255-65.
-
(2002)
Nat. Genet.
, vol.31
, pp. 255-265
-
-
Wu, L.F.1
Hughes, T.R.2
Davierwala, A.P.3
Robinson, M.D.4
Stoughton, R.5
Altschuler, S.J.6
-
59
-
-
0008568329
-
Resampling method For unsupervised estimation of cluster validity
-
in print
-
Levine, E., Domany, E. Resampling method For unsupervised estimation of cluster validity. Neural Comp., 2000, in print, http://www weizmann.ac.il/home/fedomany/papers.html#n58.
-
(2000)
Neural Comp.
-
-
Levine, E.1
Domany, E.2
-
60
-
-
0035979259
-
Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments
-
MKerr, K., Churchill, G. A. Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments. Proc. Natl. Acad. Sci. USA, 2001, 98: 8961-5.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8961-8965
-
-
MKerr, K.1
Churchill, G.A.2
-
61
-
-
0037172724
-
A prediction-based resampling method for estimating the number of clusters in a dataset
-
RESEARCH0036
-
Dudoit, S., Fridlyand, J. A prediction-based resampling method for estimating the number of clusters in a dataset., 2002, Genome Biol. 3: RESEARCH0036.
-
(2002)
Genome Biol.
, vol.3
-
-
Dudoit, S.1
Fridlyand, J.2
-
62
-
-
0012452913
-
-
(Stanford University,)
-
Tibshirani, R., Walther, G., Botstein, D., Brown P. "Cluster validation by prediction strength" (Stanford University, 2001) http://www-stat.stanford.edu/~tibs/research.html.
-
(2001)
"Cluster Validation By Prediction Strength"
-
-
Tibshirani, R.1
Walther, G.2
Botstein, D.3
Brown, P.4
-
64
-
-
0003499479
-
-
#576 University of California, Berkeley
-
Dudoit, S., Fridlyand, J., Speed, T. P. "Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data" #576 (University of California, Berkeley, 2000) http://www.stat.berkeley.edu/users/terry/zarray/Html/Papersindex.html.
-
(2000)
"Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data"
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.P.3
-
65
-
-
0033636139
-
Support vector machine classification and validation of cancer tissue samples using microarray expression data
-
Furey, T. S., Cristianini, N., Duffy, N., Bednarski, D. W., Schummer, M., Haussler, D. Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics, 2000, 16: 906-14.
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.S.1
Cristianini, N.2
Duffy, N.3
Bednarski, D.W.4
Schummer, M.5
Haussler, D.6
-
66
-
-
0033692876
-
Tissue Classification with Gene Expression Profiles
-
Ben-Dor, A., Bruhn, L., Friedman, N.. Nachman, I., Schummer, M., Yakhini, Z. Tissue Classification with Gene Expression Profiles. J. Comput. Biol., 2000, 7: 559-583.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 559-583
-
-
Ben-Dor, A.1
Bruhn, L.2
Friedman, N.3
Nachman, I.4
Schummer, M.5
Yakhini, Z.6
-
67
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter, O., Brown, P. O., Botstein, D. Singular value decomposition for genome-wide expression data processing and modeling. Proc. Natl. Acad. Sci. USA, 2000, 97: 10101-6.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
68
-
-
0034704229
-
A global geometric framework for nonlinear dimensionality reduction
-
Tenenbaum, J. B., de Silva, V., Langford, J. C. A global geometric framework for nonlinear dimensionality reduction. Science, 2000, 290: 2319-23.
-
(2000)
Science
, vol.290
, pp. 2319-2323
-
-
Tenenbaum, J.B.1
de Silva, V.2
Langford, J.C.3
-
69
-
-
0034704222
-
Nonlinear dimensionality reduction by locally linear embedding
-
Roweis, S. T., Saul, L. K. Nonlinear dimensionality reduction by locally linear embedding. Science, 2000, 290: 2323-6.
-
(2000)
Science
, vol.290
, pp. 2323-2326
-
-
Roweis, S.T.1
Saul, L.K.2
-
70
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie, S., Hughes, J. D., Campbell, M. J., Cho, R. J., Church, G. M. Systematic determination of genetic network architecture. Nat. Genet., 1999, 22: 281-5.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
71
-
-
0034050902
-
Systematic variation in gene expression patterns in human cancer cell lines
-
Ross, D. T., Scherf, U., Eisen, M. B., Perou, C. M., Rees, C., Spellman, P., Iyer, V., Jeffrey, S. S., Van de Rijn, M., Waltham, M., Pergamenschikov, A., Lee, J. C., Lashkari, D., Shalon, D., Myers, T. G., Weinstein, J. N., Botstein, D., Brown, P. O. Systematic variation in gene expression patterns in human cancer cell lines. Nat. Genet., 2000, 24: 227-35.
-
(2000)
Nat. Genet.
, vol.24
, pp. 227-235
-
-
Ross, D.T.1
Scherf, U.2
Eisen, M.B.3
Perou, C.M.4
Rees, C.5
Spellman, P.6
Iyer, V.7
Jeffrey, S.S.8
Van de Rijn, M.9
Waltham, M.10
Pergamenschikov, A.11
Lee, J.C.12
Lashkari, D.13
Shalon, D.14
Myers, T.G.15
Weinstein, J.N.16
Botstein, D.17
Brown, P.O.18
-
72
-
-
0034088857
-
A gene expression database for the molecular pharmacology of cancer
-
Scherf, U., Ross, D. T., Waltham M., Smith, L. H., Lee, J. K., Tanabe, L., Kohn, K. W., Reinh d, W. C., Myers, T. G., Andrews, D. T., Scudiero, D. A., Eisen, M. B., Sausville, E. A., Pommier, Y , Botstein, D., Brown, P. O., Weinstein, J. N. A gene expression database for the molecular pharmacology of cancer. Nat. Genet., 2000, 24: 236-44.
-
(2000)
Nat. Genet.
, vol.24
, pp. 236-244
-
-
Scherf, U.1
Ross, D.T.2
Waltham, M.3
Smith, L.H.4
Lee, J.K.5
Tanabe, L.6
Kohn, K.W.7
Reinh, D.W.C.8
Myers, T.G.9
Andrews, D.T.10
Scudiero, D.A.11
Eisen, M.B.12
Sausville, E.A.13
Pommier, Y.14
Botstein, D.15
Brown, P.O.16
Weinstein, J.N.17
-
73
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte, E M., Pellegrini, M., Thompson, M. J., Yeates T. O., Eisenberg, D. A combined algorithm for genome-wide prediction of protein function. Nature, 1999, 402: 83-6.
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
74
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., Aach, J., Ansorge, W., Ball, C. A., Causton, H. C., Gaasterland, T., Glenisson, P., Holstege, F. C., Kim, I. F., Markowitz, V., Matese, J C., Parkinson, H., Robinson, A., Sarkans, U., Schulze-Kremer, S., Stewart, J., Taylor, R., Vilo, J , Vingron, M. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet., 2001, 29: 365-71.
-
(2001)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.13
Kim, I.F.14
Markowitz, V.15
Matese, JC.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
75
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J. L., Iyer, V. R., Brown, P. O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 1997, 278. 680-6.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
|