-
1
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter, O., P. O. Brown, and D. Botstein. 2000. Singular value decomposition for genome-wide expression data processing and modeling. Proc. Natl. Acad. Sci, U.S.A. 97:10101-10106.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
2
-
-
0036286631
-
Energy balance analysis for complex metabolic networks
-
Beard, D. A., S. Liang, and H. Qian. 2002. Energy balance analysis for complex metabolic networks. Biophys. J. 83:79-86.
-
(2002)
Biophys. J.
, vol.83
, pp. 79-86
-
-
Beard, D.A.1
Liang, S.2
Qian, H.3
-
3
-
-
0030804853
-
Flux analysis of underdetermined metabolic networks: The quest for the missing constraints
-
Bonarius, H. P. J., G. Schmid, and J. Tramper. 1997. Flux analysis of underdetermined metabolic networks: the quest for the missing constraints. Trends Biotechnol. 15:308-314.
-
(1997)
Trends Biotechnol.
, vol.15
, pp. 308-314
-
-
Bonarius, H.P.J.1
Schmid, G.2
Tramper, J.3
-
4
-
-
0037142769
-
Metabolic pathway analysis of a recombinant yeast for rational strain development
-
Carlson, R., D. Fell, and F. Srienc. 2002. Metabolic pathway analysis of a recombinant yeast for rational strain development. Biotechnol. Bioeng. 79:121-134.
-
(2002)
Biotechnol. Bioeng.
, vol.79
, pp. 121-134
-
-
Carlson, R.1
Fell, D.2
Srienc, F.3
-
5
-
-
0035281870
-
Metabolic modeling of microbial strains in silico
-
Covert, M. W., C. H. Schilling, I. Famili, J. S. Edwards, I. I. Goryanin, E. Selkov, and B. O. Palsson. 2001. Metabolic modeling of microbial strains in silico. Trends Biochem. Sci. 26:179-186.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 179-186
-
-
Covert, M.W.1
Schilling, C.H.2
Famili, I.3
Edwards, J.S.4
Goryanin, I.I.5
Selkov, E.6
Palsson, B.O.7
-
6
-
-
0036404867
-
The Department of Energy microbial cell project: A 180 degrees paradigm shift for biology
-
Drell, D. 2002. The Department of Energy microbial cell project: A 180 degrees paradigm shift for biology. OMICS. 6:3-9.
-
(2002)
OMICS
, vol.6
, pp. 3-9
-
-
Drell, D.1
-
7
-
-
0033580813
-
Systems properties of the Haemophilus influenzae Rd metabolic genotype
-
Edwards. J, S., and B. O. Palsson. 1999. Systems properties of the Haemophilus influenzae Rd metabolic genotype. J. Biol. Chem. 274:17410-17416.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17410-17416
-
-
Edwards, J.S.1
Palsson, B.O.2
-
8
-
-
0001827017
-
Metabolic flux balance analysis
-
S. Y. Lee and E. T. Papoutsakis, editors. Marcel Dekker, New York
-
Edwards, J. S., R. Ramakrishna, C. H. Schilling, and B. O. Palsson. 1999. Metabolic flux balance analysis. In Metabolic Engineering. S. Y. Lee and E. T. Papoutsakis, editors. Marcel Dekker, New York. 13-57.
-
(1999)
Metabolic Engineering
, pp. 13-57
-
-
Edwards, J.S.1
Ramakrishna, R.2
Schilling, C.H.3
Palsson, B.O.4
-
12
-
-
0030571222
-
Pathway analysis, engineering and physiological considerations for redirecting central metabolism
-
Liao, J. C., S. Y. Hou, and Y. P. Chao. 1996. Pathway analysis, engineering and physiological considerations for redirecting central metabolism. Biotechnol. Bioeng. 52:129-140.
-
(1996)
Biotechnol. Bioeng.
, vol.52
, pp. 129-140
-
-
Liao, J.C.1
Hou, S.Y.2
Chao, Y.P.3
-
13
-
-
0036350955
-
The genome-scale metabolic extreme pathway structure in haemophilus influenzae shows significant network redundancy
-
Papin, J. A., N. D. Price, J. S. Edwards, and B. O. Palsson. 2002a. The genome-scale metabolic extreme pathway structure in haemophilus influenzae shows significant network redundancy, J. Theor. Biol. 215:67-82.
-
(2002)
J. Theor. Biol.
, vol.215
, pp. 67-82
-
-
Papin, J.A.1
Price, N.D.2
Edwards, J.S.3
Palsson, B.O.4
-
14
-
-
0036916269
-
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
-
Papin, J. A., N, D. Price, and B. O. Palsson. 2002b. Extreme pathway lengths and reaction participation in genome-scale metabolic networks. Genome Res. 12:1889-1900.
-
(2002)
Genome Res.
, vol.12
, pp. 1889-1900
-
-
Papin, J.A.1
Price, N.D.2
Palsson, B.O.3
-
15
-
-
0036100243
-
Determination of redundancy and systems properties of helicobacter pylori's metabolic network using genome-scale extreme pathway analysis
-
Price, N. D., J. A. Papin, and B. O. Palsson. 2002a. Determination of redundancy and systems properties of helicobacter pylori's metabolic network using genome-scale extreme pathway analysis. Genome Res. 12:760-769.
-
(2002)
Genome Res.
, vol.12
, pp. 760-769
-
-
Price, N.D.1
Papin, J.A.2
Palsson, B.O.3
-
16
-
-
0036840340
-
Extreme pathways and Kirchhoff's second law
-
Price, N. D., I. Famili, D. A. Beard, and B. O. Palsson. 2002b. Extreme pathways and Kirchhoff's second law (letter to the editor). Biophys. J. 83:2879-2882.
-
(2002)
Biophys. J.
, vol.83
, pp. 2879-2882
-
-
Price, N.D.1
Famili, I.2
Beard, D.A.3
Palsson, B.O.4
-
18
-
-
84966586597
-
Parallel out-of-core algorithm for genome-scale enumeration of metabolic systematic pathways
-
Ft. Lauderdale, Florida
-
Samatova, N. F., A. Geist, G. Ostrouchov, and A. V. Melechko. 2002. Parallel out-of-core algorithm for genome-scale enumeration of metabolic systematic pathways. Proceedings of the First IEEE Workshop on High Performance Computational Biology (HiCOMB 2002). Ft. Lauderdale, Florida. p. 185.
-
(2002)
Proceedings of the First IEEE Workshop on High Performance Computational Biology (HiCOMB 2002)
, pp. 185
-
-
Samatova, N.F.1
Geist, A.2
Ostrouchov, G.3
Melechko, A.V.4
-
19
-
-
0034615788
-
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis
-
Schilling, C. H., and B. O. Palsson. 2000. Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis. J. Theor. Biol. 203:249-283.
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 249-283
-
-
Schilling, C.H.1
Palsson, B.O.2
-
20
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
Schilling, C. H., D. Letscher, and B. O. Palsson. 2000. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol. 203:229-248.
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
21
-
-
0036330798
-
Genome-scale metabolic model of Helicobacter pylori 26695
-
Schilling, C. H., M. W. Covert, I. Famili, G. M. Church, J. S. Edwards, and B. O. Palsson. 2002. Genome-scale metabolic model of Helicobacter pylori 26695. J. Bacteriol. 184:4582-4593.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4582-4593
-
-
Schilling, C.H.1
Covert, M.W.2
Famili, I.3
Church, G.M.4
Edwards, J.S.5
Palsson, B.O.6
-
22
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
Schuster, S., D. A. Fell, and T. Dandekar. 2000. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 18:326-332.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 326-332
-
-
Schuster, S.1
Fell, D.A.2
Dandekar, T.3
-
23
-
-
0028108519
-
Metabolic flux balancing: Basic concepts, scientific and practical use
-
Varma. A., and B. O. Palsson. 2002. Metabolic flux balancing: basic concepts, scientific and practical use. Bio-Technol. 12:994-998.
-
(2002)
Bio-Technol.
, vol.12
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
24
-
-
0035997009
-
Extreme pathway analysis of human red blood cell metabolism
-
Wiback, S. J., and B. O. Palsson. 2002. Extreme pathway analysis of human red blood cell metabolism. Biophys. J. 83:808-818.
-
(2002)
Biophys. J.
, vol.83
, pp. 808-818
-
-
Wiback, S.J.1
Palsson, B.O.2
-
25
-
-
0037197936
-
Reverse engineering gene networks using singular value decomposition and robust regression
-
Yeung, M. K., J. Tegner, and J, J. Collins. 2002. Reverse engineering gene networks using singular value decomposition and robust regression. Proc. Natl. Acad. Sci. USA. 99:6163-6168.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6163-6168
-
-
Yeung, M.K.1
Tegner, J.2
Collins, J.J.3
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