-
1
-
-
0033681250
-
Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter
-
Agalioti, T., S. Lomvardas, B. Parekh, J. Yie, T. Maniatis, and D. Thanos. 2000. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter. Cell 103:667-678.
-
(2000)
Cell
, vol.103
, pp. 667-678
-
-
Agalioti, T.1
Lomvardas, S.2
Parekh, B.3
Yie, J.4
Maniatis, T.5
Thanos, D.6
-
2
-
-
0034667949
-
High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: Roles in promoter proximal pausing and transcription elongation
-
Andrulis, E. D., E. Guzman, P. Doring, J. Werner, and J. T. Lis. 2000. High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev. 14:2635-2649.
-
(2000)
Genes Dev.
, vol.14
, pp. 2635-2649
-
-
Andrulis, E.D.1
Guzman, E.2
Doring, P.3
Werner, J.4
Lis, J.T.5
-
3
-
-
0003392343
-
Protocol 3.1, nuclear run-on assay
-
M. Carey and S. T. Smale (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Carey, M., and S. T. Smale. 1999. Protocol 3.1, nuclear run-on assay, p. 87. In M. Carey and S. T. Smale (ed.), Transcriptional regulation in eukaryotes. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1999)
Transcriptional Regulation in Eukaryotes
, pp. 87
-
-
Carey, M.1
Smale, S.T.2
-
4
-
-
0035893314
-
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain
-
Cho, E. J., M. S. Kobor, M. Kim, J. Greenblatt, and S. Buratowski. 2001. Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain. Genes Dev. 15:3319-3329.
-
(2001)
Genes Dev.
, vol.15
, pp. 3319-3329
-
-
Cho, E.J.1
Kobor, M.S.2
Kim, M.3
Greenblatt, J.4
Buratowski, S.5
-
5
-
-
0031453408
-
mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain
-
Cho, E. J., T. Takagi, C. R. Moore, and S. Buratowski. 1997. mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain. Genes Dev. 11:3319-3326.
-
(1997)
Genes Dev.
, vol.11
, pp. 3319-3326
-
-
Cho, E.J.1
Takagi, T.2
Moore, C.R.3
Buratowski, S.4
-
6
-
-
0035930571
-
c-Myc mediates activation of the cad promoter via a post-RNA polymerase II recruitment mechanism
-
Eberhardy, S. R., and P. J. Farnham. 2001. c-Myc mediates activation of the cad promoter via a post-RNA polymerase II recruitment mechanism. J. Biol. Chem. 276:48562-48571.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 48562-48571
-
-
Eberhardy, S.R.1
Farnham, P.J.2
-
7
-
-
0035878112
-
Capping, splicing, and 3′ processing are independently stimulated by RNA polymerase II: Different functions for different segments of the CTD
-
Fong, N., and D. L. Bentley. 2001. Capping, splicing, and 3′ processing are independently stimulated by RNA polymerase II: different functions for different segments of the CTD. Genes Dev. 15:1783-1795.
-
(2001)
Genes Dev.
, vol.15
, pp. 1783-1795
-
-
Fong, N.1
Bentley, D.L.2
-
8
-
-
0033598745
-
Promoter-specific hypoacetylation of X-inactivated genes
-
Gilbert, S. L., and P. A. Sharp. 1999. Promoter-specific hypoacetylation of X-inactivated genes. Proc. Natl. Acad. Sci. USA 96:13825-13830.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13825-13830
-
-
Gilbert, S.L.1
Sharp, P.A.2
-
9
-
-
0032480229
-
RNA polymerase II is an essential mRNA polyadenylation factor
-
Hirose, Y., and J. L. Manley. 1998. RNA polymerase II is an essential mRNA polyadenylation factor. Nature 395:93-96.
-
(1998)
Nature
, vol.395
, pp. 93-96
-
-
Hirose, Y.1
Manley, J.L.2
-
10
-
-
0033563098
-
Phosphorylated RNA polymerase II stimulates pre-mRNA splicing
-
Hirose, Y., R. Tacke, and J. L. Manley. 1999. Phosphorylated RNA polymerase II stimulates pre-mRNA splicing. Genes Dev. 13:1234-1239.
-
(1999)
Genes Dev.
, vol.13
, pp. 1234-1239
-
-
Hirose, Y.1
Tacke, R.2
Manley, J.L.3
-
11
-
-
0033105827
-
Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian mRNA capping enzyme
-
Ho, C. K., and S. Shuman. 1999. Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian mRNA capping enzyme. Mol. Cell 3:405-411.
-
(1999)
Mol. Cell
, vol.3
, pp. 405-411
-
-
Ho, C.K.1
Shuman, S.2
-
12
-
-
0034667805
-
Spt5 and Spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster
-
Kaplan, C. D., J. R. Morris, C. Wu, and F. Winston. 2000. Spt5 and Spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster. Genes Dev. 14:2623-2634.
-
(2000)
Genes Dev.
, vol.14
, pp. 2623-2634
-
-
Kaplan, C.D.1
Morris, J.R.2
Wu, C.3
Winston, F.4
-
13
-
-
0035853736
-
Positive transcription elongation factor B phosphorylates hSPT5 and RNA polymerase II carboxyl-terminal domain independently of cyclin-dependent kinase-activating kinase
-
Kim, J. B., and P. A. Sharp. 2001. Positive transcription elongation factor B phosphorylates hSPT5 and RNA polymerase II carboxyl-terminal domain independently of cyclin-dependent kinase-activating kinase. J. Biol. Chem. 276:12317-12323.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 12317-12323
-
-
Kim, J.B.1
Sharp, P.A.2
-
14
-
-
0034307008
-
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
-
Komarnitsky, P., E. J. Cho, and S. Buratowski. 2000. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev. 14:2452-2460.
-
(2000)
Genes Dev.
, vol.14
, pp. 2452-2460
-
-
Komarnitsky, P.1
Cho, E.J.2
Buratowski, S.3
-
15
-
-
0028924386
-
Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation
-
Krumm, A., L. B. Hickey, and M. Groudine. 1995. Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation. Genes Dev. 9:559-572.
-
(1995)
Genes Dev.
, vol.9
, pp. 559-572
-
-
Krumm, A.1
Hickey, L.B.2
Groudine, M.3
-
16
-
-
0026440185
-
The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region
-
Krumm, A., T. Meulia, M. Brunvand, and M. Groudine. 1992. The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region. Genes Dev. 6:2201-2213.
-
(1992)
Genes Dev.
, vol.6
, pp. 2201-2213
-
-
Krumm, A.1
Meulia, T.2
Brunvand, M.3
Groudine, M.4
-
17
-
-
0024414213
-
HIV-1 Tat protein increases transcriptional initiation and stabilizes elongation
-
Laspia, M. F., A. P. Rice, and M. B. Mathews. 1989. HIV-1 Tat protein increases transcriptional initiation and stabilizes elongation. Cell 59:283-292.
-
(1989)
Cell
, vol.59
, pp. 283-292
-
-
Laspia, M.F.1
Rice, A.P.2
Mathews, M.B.3
-
18
-
-
0021259402
-
Dihydrofolate reductase gene expression in cultured mouse cells is regulated by transcript stabilization in the nucleus
-
Leys, E. J., G. F. Crouse, and R. E. Kellems. 1984. Dihydrofolate reductase gene expression in cultured mouse cells is regulated by transcript stabilization in the nucleus. J. Cell Biol. 99:180-187.
-
(1984)
J. Cell Biol.
, vol.99
, pp. 180-187
-
-
Leys, E.J.1
Crouse, G.F.2
Kellems, R.E.3
-
19
-
-
0032459466
-
Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation
-
Lis, J. 1998. Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation. Cold Spring Harbor Symp. Quant. Biol. 63:347-356.
-
(1998)
Cold Spring Harbor Symp. Quant. Biol.
, vol.63
, pp. 347-356
-
-
Lis, J.1
-
20
-
-
0034175631
-
P-TEFb kinase recruitment and function at heat shock loci
-
Lis, J. T., P. Mason, J. Peng, D. H. Price, and J. Werner. 2000. P-TEFb kinase recruitment and function at heat shock loci. Genes Dev. 14:792-803.
-
(2000)
Genes Dev.
, vol.14
, pp. 792-803
-
-
Lis, J.T.1
Mason, P.2
Peng, J.3
Price, D.H.4
Werner, J.5
-
21
-
-
0031037856
-
The C-terminal domain of RNA polymerase II couples mRNA processing to transcription
-
McCracken, S., N. Fong, K. Yankulov, S. Ballantyne, G. Pan, J. Greenblatt, S. D. Patterson, M. Wickens, and D. L. Bentley. 1997. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature 385:357-361.
-
(1997)
Nature
, vol.385
, pp. 357-361
-
-
McCracken, S.1
Fong, N.2
Yankulov, K.3
Ballantyne, S.4
Pan, G.5
Greenblatt, J.6
Patterson, S.D.7
Wickens, M.8
Bentley, D.L.9
-
22
-
-
0033153543
-
RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo
-
Misteli, T., and D. L. Spector. 1999. RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo. Mol. Cell 3:697-705.
-
(1999)
Mol. Cell
, vol.3
, pp. 697-705
-
-
Misteli, T.1
Spector, D.L.2
-
23
-
-
0028305843
-
Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation
-
O'Brien, T., S. Hardin, A. Greenleaf, and J. T. Lis. 1994. Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation. Nature 370:75-77.
-
(1994)
Nature
, vol.370
, pp. 75-77
-
-
O'Brien, T.1
Hardin, S.2
Greenleaf, A.3
Lis, J.T.4
-
24
-
-
0032548846
-
Growth-related changes in phosphorylation of yeast RNA polymerase II
-
Patturajan, M., R. J. Schulte, B. M. Sefton, R. Berezney, M. Vincent, O. Bensaude, S. L. Warren, and J. L. Corden. 1998. Growth-related changes in phosphorylation of yeast RNA polymerase II. J. Biol. Chem. 273:4689-4694.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 4689-4694
-
-
Patturajan, M.1
Schulte, R.J.2
Sefton, B.M.3
Berezney, R.4
Vincent, M.5
Bensaude, O.6
Warren, S.L.7
Corden, J.L.8
-
25
-
-
0028893897
-
Elongation and premature termination of transcripts initiated from c-fos and c-myc promoters show dissimilar patterns
-
Plet, A., D. Eick, and J. M. Blanchard. 1995. Elongation and premature termination of transcripts initiated from c-fos and c-myc promoters show dissimilar patterns. Oncogene 10:319-328.
-
(1995)
Oncogene
, vol.10
, pp. 319-328
-
-
Plet, A.1
Eick, D.2
Blanchard, J.M.3
-
26
-
-
0034111019
-
P-TEFb, a cyclin-dependent kinase controlling elongation by RNA polymerase II
-
Price, D. H. 2000. P-TEFb, a cyclin-dependent kinase controlling elongation by RNA polymerase II. Mol. Cell. Biol. 20:2629-2634.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 2629-2634
-
-
Price, D.H.1
-
27
-
-
0033986862
-
Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II
-
Rodriguez, C. R., E. J. Cho, M. C. Keogh, C. L. Moore, A. L. Greenleaf, and S. Buratowski. 2000. Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II. Mol. Cell. Biol. 20:104-112.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 104-112
-
-
Rodriguez, C.R.1
Cho, E.J.2
Keogh, M.C.3
Moore, C.L.4
Greenleaf, A.L.5
Buratowski, S.6
-
28
-
-
0025166038
-
Postinitiation transcriptional control in Drosophila melanogaster
-
Rougvie, A. E., and J. T. Lis. 1990. Postinitiation transcriptional control in Drosophila melanogaster. Mol. Cell. Biol. 10:6041-6045.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 6041-6045
-
-
Rougvie, A.E.1
Lis, J.T.2
-
29
-
-
0034307172
-
Dynamic association of capping enzymes with transcribing RNA polymerase II
-
Schroeder, S. C., B. Schwer, S. Shuman, and D. Bentley. 2000. Dynamic association of capping enzymes with transcribing RNA polymerase II. Genes Dev. 14:2435-2440.
-
(2000)
Genes Dev.
, vol.14
, pp. 2435-2440
-
-
Schroeder, S.C.1
Schwer, B.2
Shuman, S.3
Bentley, D.4
-
30
-
-
0029107231
-
Capping enzyme in eukaryotic mRNA synthesis
-
Shuman, S. 1995. Capping enzyme in eukaryotic mRNA synthesis. Prog. Nucleic Acid Res. Mol. Biol. 50:101-129.
-
(1995)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.50
, pp. 101-129
-
-
Shuman, S.1
-
31
-
-
0034608950
-
Amplification of the human dihydrofolate reductase gene via double minutes is initiated by chromosome breaks
-
Singer, M. J., L. D. Mesner, C. L. Friedman, B. J. Trask, and J. L. Hamlin. 2000. Amplification of the human dihydrofolate reductase gene via double minutes is initiated by chromosome breaks. Proc. Natl. Acad. Sci. USA 97:7921-7926.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7921-7926
-
-
Singer, M.J.1
Mesner, L.D.2
Friedman, C.L.3
Trask, B.J.4
Hamlin, J.L.5
-
32
-
-
0037040550
-
Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation
-
Soutoglou, E., and I. Talianidis. 2002. Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation. Science 295:1901-1904.
-
(2002)
Science
, vol.295
, pp. 1901-1904
-
-
Soutoglou, E.1
Talianidis, I.2
-
33
-
-
0026660649
-
Hold back of RNA polymerase II at the transcription start site mediates down-regulation of c-myc in vivo
-
Strobl, L. J., and D. Eick. 1992. Hold back of RNA polymerase II at the transcription start site mediates down-regulation of c-myc in vivo. EMBO J. 11:3307-3314.
-
(1992)
EMBO J.
, vol.11
, pp. 3307-3314
-
-
Strobl, L.J.1
Eick, D.2
-
34
-
-
0034117285
-
Promoter-proximal pausing on the hsp70 promoter in Drosophila melanogaster depends on the upstream regulator
-
Tang, H., Y. Liu, L. Madabusi, and D. S. Gilmour. 2000. Promoter-proximal pausing on the hsp70 promoter in Drosophila melanogaster depends on the upstream regulator. Mol. Cell. Biol. 20:2569-2580.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 2569-2580
-
-
Tang, H.1
Liu, Y.2
Madabusi, L.3
Gilmour, D.S.4
-
35
-
-
14444275279
-
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
-
Wada, T., T. Takagi, Y. Yamaguchi, A. Ferdous, T. Imai, S. Hirose, S. Sugimoto, K. Yano, G. A. Hartzog, F. Winston, S. Buratowski, and H. Handa. 1998. DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev. 12:343-356.
-
(1998)
Genes Dev.
, vol.12
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
Hirose, S.6
Sugimoto, S.7
Yano, K.8
Hartzog, G.A.9
Winston, F.10
Buratowski, S.11
Handa, H.12
-
36
-
-
0032534814
-
Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro
-
Wada, T., T. Takagi, Y. Yamaguchi, D. Watanabe, and H. Handa. 1998. Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro. EMBO J. 17:7395-7403.
-
(1998)
EMBO J.
, vol.17
, pp. 7395-7403
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Watanabe, D.4
Handa, H.5
-
37
-
-
0028236808
-
Transcriptional elongation by RNA polymerase II is stimulated by transactivators
-
Yankulov, K., J. Blau, T. Purton, S. Roberts, and D. L. Bentley. 1994. Transcriptional elongation by RNA polymerase II is stimulated by transactivators. Cell 77:749-759.
-
(1994)
Cell
, vol.77
, pp. 749-759
-
-
Yankulov, K.1
Blau, J.2
Purton, T.3
Roberts, S.4
Bentley, D.L.5
-
38
-
-
0025915378
-
Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase II largest subunit
-
Zhang, J., and J. L. Corden. 1991. Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase II largest subunit. J. Biol. Chem. 266:2290-2296.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 2290-2296
-
-
Zhang, J.1
Corden, J.L.2
|