Leaf ESTs from Stevia rebaudiana: A resource for gene discovery in diterpene synthesis

Plant Molecular Biology

Volumn 50, Issue 4-5, 2002, Pages 613-622

  Brandle, J E ^a   Richman, A ^a   Swanson, A K ^a   Chapman, B P ^a  

^a AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

Diterpene; Expressed sequence tags; Stevia; Steviol glycosides

Indexed keywords

BIOSYNTHESIS; DNA; GENES; METABOLISM; ORGANIC COMPOUNDS; SYNTHESIS (CHEMICAL);

ELECTRONIC PROBES;

PLANTS (BOTANY);

DITERPENES; DITERPENES, KAURANE; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENES, PLANT; GLYCOSIDES; MOLECULAR SEQUENCE DATA; PLANT LEAVES; SEQUENCE ANALYSIS, DNA; STEVIA;

EMBRYOPHYTA; STEVIA REBAUDIANA;

EID: 0036836919     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1019993221986     Document Type: Article

References (44)

1. Ablett, E., Seaton, G., Scott, K., Shelton, D., Graham, M.W., Baverstock, P., Lee, L.S. and Henry, R. 2000. Analysis of grape ESTs: global gene expression patterns in leaf and berry. Plant Sci. 159: 87-95.
2. Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25: 3389-3402.
3. Arigoni, D., Eisenreich, W., Latzel, C., Sagner, S., Radykewicz, T., Zenk, M.H. and Bacher, A. 1999. Dimethylallyl pyrophosphate is not the committed precursor of isopentenyl pyrophosphate during terpenoid biosenthesis from 1-deoxyxylulose in higher plants. Proc. Natl. Acad. Sci. USA 96: 1309-1314.
4. Asamizu, E., Nakamura, Y., Sata, S. and Tabata, S. 2000. A large scale analysis of cDNA in Arabidopsis thaliana: generation of 12, 028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries. DNA Res. 7: 175-180.
5. Bevan, M., Bancroft, I., Bent, E., Love, K., Goodman, H., Dean, C. et al. 1998. Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. The EU Arabidopsis Genome Project. Nature 391:485-488.
6. Blattner, F.R., Plunkett, G. III, Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides. J., Glasner, J.D., Rode, C.K., Mayhew, G.F., Gregor, J., Davis, N.W., Kirkpatrick, H.A., Goeden, M.A., Rose, D.J., Mau, B. and Shao, Y. 1997. The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1474.
7. Brandle, J.E. 1998. Genetic control of rebaudioside A and C concentration in leaves of the sweet herb, Stevia rebaudiana. Can. J. Plant Sci. 79: 85-92.
8. Brandle, J.E. and Rosa, N. 1992. Heritability for yield, leaf: stem ratio and stevioside content estimated from a landrace cultivar of Stevia rebaudiana. Can. J. Plant Sci. 72: 1263-1266.
9. Brandle, J.E., Starratt, A.N. and Gijzen, M. 1998. Stevia rebaudiana: its agricultural, biological, and chemical properties. Can. J. Plant Sci. 78: 527-536.
10. Campos, N., Rodriguez-Concepción, M., Seemann, M., Rohmer, M. and Boronat, A. 2001. Identification of gcpE as a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway for isoprenoid biosynthesis in Escherichia coli. FEBS Lett. 488: 170-173.
11. Cunningham, F.X., Lafond, T.P. and Gantt, E. 2000. Evidence of a role for LytB in the nonmevalonate pathway of isoprenoid biosynthesis. J. Bact. 182: 5841-5848.
12. Eisenreich, W., Rohdich, F. and Bacher, A. 2001. Deoxyxylulose phosphate pathway to terpenoids. Trends Plant Sci. 6: 678-684.
13. Gang, D.R., Wang, J., Dudareva, N., Hee Nam, K., Simon, J.E., Lewinsohn, E. and Pichersky, E. 2001. An investigation of the storage and biosynthesis of phenylpropenes in sweet basil. Plant Physiol. 125: 539-555.
14. Hedden, P. and Phillips, A.L. 2000. Gibberellin metabolism: new insights revealed by the genes. Trends Plant Sci. 5: 523-530.
15. Helliwell, C.A., Poole, A., Peacock, W.J. and Dennis, E.S. 1999. Arabidopsis ent-kaurene oxidase catalyzes three steps of gibberellin biosynthesis. Plant Physiol 119: 507-510.
16. Helliwell, C.A., Chandler, P.M., Poole, A., Dennis, E.S. and Peacock, W.J. 2001. The CYP88A cytochrome P450, ent-kaurenoic acid oxidase, catalyzes three steps of the gibberellin biosynthesis pathway. Plant Biol. 98: 2065-2070.
17. Herz, S., Wungsintaweekul, J., Schuhr, C.A., Hecht, S., Lüttgen, H., Sagner, S., Fellermeier, M., Eisenreich, W., Zenk, M.H., Bacher, A. and Rohdich, F. 2000. Biosynthesis of terpenoids: YgbB protein converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate to 2C-methyl-D-erythritol 2, 4-cyclodiphosphate. Proc. Natl. Acad. Sci. USA 97: 2486-2490.
18. Jurka, J. 2000. Repbase Update: a database and an electronic journal of repetitive elements. Trends Genet. 16 (9): 418-420.
19. Kacser, H. and Acerenza, L. 1993. A universal method of achieving increases in metabolic production. Eur. J. Biochem. 216: 361-367.
20. Kim, K.K., Sawa, Y., and Shibata, H. 1996. Hydroxylation of ent-kaurenoic acid to steviol in Stevia rebaudiana Bertoni: purification and partial characterization of the enzyme. Arch. Biochem. Biophys. 332: 223-230.
21. Lange, B.M. and Croteau, R. 1999. Isoprenoid biosynthesis via a mevalonate-independent pathway in plants: cloning and heterologous expression of 1-deoxy-D-xylulose-5-phosphate reductoisomerase from peppermint. Arch. Biochem. Biophys. 365: 170-174.
22. Lange, B.M., Wildung, M.R., McCaskill, D. and Croteau, R. 1998. A family of transketolases that directs isoprenoid biosynthesis via a mevalonate-independent pathway. Proc. Natl. Acad. Sci. USA 95: 2100-2104.
23. Lange, B.M., Wildung, M.R., Stauber, E.J., Sanchez, C., Pouchnik, D. and Croteau, R. 1999. Probing essential oil biosynthesis and secretion by functional evaluation of expressed sequence tags from mint glandular trichomes. Proc. Natl. Acad. Sci. USA 97: 2934-2939.
24. Lüttgen, H., Rohdich, F., Herz, S., Wungsintaweekul, J., Hecht, S., Schuhr, C.A., Fellermeier, M., Sagner, S., Zenk, M.H., Bacher, A. and Eisenreich, W. 2000. Biosynthesis of terpenoids: YchB protein of Escherichia coli phosphorylates the 2-hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Proc. Natl. Acad. Sci. USA 97: 1062-1067.
25. McGarvey, D.J. and Croteau, R. 1995. Terpenoid metabolism. Plant Cell 7: 1015-1026.
26. Mewes, H.W., Albermann, K., Bähr, Frishman, D., Gleissner, A., Hani, J., Heumann, K., Kleine, K., Maieri, A., Oliver, S.G., Pfeiffer, F. and Zollner, A. 1997. Overview of the yeast genome. Nature 387: 7-65.
27. Ohlrogge, J. and Benning, C. 2000. Unravelling plant metabolism by EST analysis. Curr. Opin. Plant Biol. 3: 224-228.
28. Richman, A.S., Gijzen, M., Starratt, A.N., Yang, Z. and Brandle, J.E. 1999. Diterpene synthesis in Stevia rebaudiana: recruitment and up-regulation of key enzymes from the gibberellin biosynthetic pathway. Plant J. 19: 411-421.
29. Rodriguez-Concepción, M., Campos, N., Lois, L.M., Maldonado, C., Hoeffler, J.F., Grosdemange-Billiard, C., Rohmer, M. and Boronat, A. 2000. Genetic evidence of branching in the isoprenoid pathway for the production of isopentenyl diphosphate and dimethylallyl diphosphate in Escherichia coli. FEBS Lett. 473: 328-332.
30. Rohdich, F., Wungsintaweekul, J., Fellermeier, M., Sagner, S., Herz, S., Kis, K., Eisenreich, W., Bacher, A. and Zenk, M.H. 1999. Cytidine 5′-triphosphate-dependent biosynthesis of isoprenoids: YgbP protein of Escherichia coli catalyzes the formation of 4-diphosphocytidyl-2-C-methylerythritol. Proc. Natl. Acad. Sci. USA 96: 11758-11763.
31. Rohdich, F., Wungsintaweekul, J., Lüttgen, H., Fischer, M., Eisenreich, W., Schuhr, C.A., Fellermeier, M., Schramek, N., Zenk, M.H. and Bacher, A. 1999 Biosynthesis of terpenoids: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase from tomato. Proc. Natl. Acad. Sci. USA 97: 8251-8256.
32. Sato, S., Nakamura, Y., Kaneko, T., Asamizu, E. and Tabata, S. 1999. Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res. 6 (5): 283-290.
33. Schaffer, R., Landgraf, J., Accerbi, M., Simon, V., Larson, and Wisman, E. 2001. Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell 13:113-123.
34. Schuster, G., Lisitsky, I. and Klaff, P. 1999. Polyadenylation and degradation of mRNA in the chloroplast. Plant Physiol. 120: 937-944.
35. Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y. and Shinozaki, K. 2001. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13: 61-72.
36. Shibata, H., Sonoke, S., Ochiai, H., Nishihashi, H. and Yamada, M. 1991. Glucosylation of steviol and steviol-glucosides in extracts from Stevia rebaudiana Bertoni. Plant Physiol. 95: 152-156.
37. Shibata, H., Sawa, Y., Oka, T., Sonoke, S., Kim, K.K. and Yoshioka, M. 1995. Steviol and steviol-glucoside: glucosyltransferase activities in Stevia rebaudiana Bertoni: purification and partial characterization. Arch. Biochem. Biophys. 321: 390-396.
38. Sterky, F., Regan, S., Karlsson, J., Hertzberg, M., Rohde, A., Holmberg, A., Amini, B., Bhalerao, R., Larsson, M., Villarroel, R., Van Montagu, M., Sandberg, G., Olsson, O., Teeri, T.T., Boerjan, W., Gustafsson, P., Uhlén, M., Sundberg, B. and Lundeberg, J. 1998. Gene discovery in the wood-forming tissues of poplar: analysis of 5, 692 expressed sequence tags. Proc. Natl. Acad. Sci. USA 95: 3330-13335.
39. Totté, N., Caron, L., Rohmer, M., Compernolle, F., Baboeuf, I. and Geuns, J.M.C. 2000. Biosynthesis of the diterpenoid steviol, an ent-kaurene derivative from Stevia rebaudiana Bertoni, via the methylerythritol phosphate pathway. Tetahedron Lett. 41: 6407-6410.
40. Unseld, M., Marienfeld, J.R., Brandt, P. and Brennicke, A. 1997. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366, 924 nucleotides. Nature Genet. 15: 57-61.
41. van de Loo, F.J., Broun, P., Turner, S. and Somerville, C. 1995. An oleate 12-hydroxylase from Ricinus communis L. is a fatty acyl desaturase homolog. Proc. Natl. Acad. Sci. USA 92: 6743-6747.
42. Vogt, T. and Jones, P. 2000. Glycosyltransferases in plant natural product synthesis: characterization of a supergene family. Trends Plant Sci. 5: 380-386.
43. White, J.A., Todd, J., Newman, T., Focks, N., Girke, T., Martinez de Ilárduya, M., Jaworski, J.G., Ohlrogge, J.B. and Benning, C. 2000. A new set of Arabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil. Plant Physiol. 124: 582-1594.
44. Wu, L., Ueda, T. and Messing, J. 1995. The formation of mRNA 3′-ends in plants. Plant J. 8: 323-329.