Polyadenylation and degradation of mRNA in the chloroplast

Plant Physiology

Volumn 120, Issue 4, 1999, Pages 937-944

  Schuster, Gadi ^a   Lisitsky, Irena ^a   Klaff, Petra ^b  

^a TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

^b HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST; MESSENGER RNA; RNA DEGRADATION;

EMBRYOPHYTA;

EID: 0033180187     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.120.4.937     Document Type: Review

References (33)

1. Barkan A (1993) Nuclear mutants of maize with defects in chloroplast polysome assembly have altered chloroplast RNA metabolism. Plant Cell 5: 389-402
2. Barkan A, Stern D (1998) Chloroplast mRNA processing: intron splicing and 3′-end metabolism. In J Bailey-Serres, DR Gallie, eds, A Look Beyond Transcription: Mechanisms Determining mRNA Stability and Translation in Plants. American Society of Plant Physiologists, Rockville, MD, pp 162-173
3. Blum E, Carpousis AJ, Higgins CF (1999) Polyadenylation promotes degradation of 3′-structured RNA by the Escherichia coli mRNA degradosome in vitro. J Biol Chem 274: 4009-4016
4. Burkard G, Keller EB (1974) Poly(A) polymerase and poly(G) polymerase in wheat chloroplasts. Proc Natl Acad Sci USA 71: 389-393
5. Cao G, Sarkar N (1997) Stationary phase-specific mRNAs in Escherichia coli are adenylated. Biochem Biophys Res Commun 239: 46-50
6. Carpousis AJ, Van Houwe G, Ehretsmann C, Krisch HM (1994) Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell 76: 889-900
7. Carpousis AJ, Vanzo NF, Raynal LC (1999) mRNA degradation, a tale of poly(A) and multiprotein machines. Trends Genet 15: 24-28
8. Coburn GA, Mackie GA (1996) Differential sensitivities of portions of the mRNA for ribosomal protein S20 to 3′-exonucleases dependent on oligoadenylation and RNA secondary structure. J Biol Chem 271: 15776-15781
9. Drager RG, Girard-Bascou J, Choquet Y, Kindle KL, Stern DB (1998) In vivo evidence for 5′→3′ exoribonuclease degradation of an unstable chloroplast mRNA. Plant J 13: 85-96
10. Drager RG, Stern DB (1998) Chloroplast RNA synthesis and processing. In J-D Rochaix, M Goldschmidt-Clermont, S Merchant, eds, Molecular Biology of Chlamydomonas: Chloroplasts and Mitochondria, Vol 7. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 165-140
11. Goldschmidt-Clermont M (1998) Coordination of nuclear and chloroplast gene expression in plant cells. Int Rev Cytol 177: 115-180
12. Gruissem W (1989) Chloroplast gene expression: how plants turn their plastids on. Cell 56: 161-170
13. Haff LA, Bogorad L (1976) Poly(adenylic add)-containing RNA from plastids of maize. Biochemistry 15: 4110-4115
14. Hayes R, Kudla J, Schuster G, Gabay L, Maliga P, Gruissem W (1996) Chloroplast mRNA 3′-end processing by a high molecular weight protein complex is regulated by nuclear-encoded RNA binding proteins. EMBO J 15: 1132-1141
15. Jacobs JS, Anderson AR, Parker RP (1998) The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J 17: 1497-1506
16. Kim M, Christopher DA, Mullet JE (1993) Direct evidence for selective modulation of psbA, rpoA, rbcL, and 16S RNA stability during barley chloroplast development. Plant Mol Biol 22: 447-463
17. Klaff P, Gruissem W (1991) Changes in chloroplast mRNA stability during leaf development. Plant Cell 3: 517-530
18. Kudla J, Hayes R, Gruissem W (1996) Polyadenylation accelerates degradation of chloroplast mRNA. EMBO J 15: 7137-7146
19. Lisitsky I, Klaff P, Schuster G (1996) Addition of poly(A)-rich sequences to endonucleolytic cleavage sites in the degradation of spinach chloroplast mRNA. Proc Natl Acad Sci USA 93: 13398-13403
20. Lisitsky I, Klaff P, Schuster G (1997a) Blocking polyadenylation of mRNA in the chloroplast inhibits its degradation. Plant J 12: 1173-1178
21. Lisitsky I, Kotler A, Schuster G (1997b) The mechanism of preferential degradation of polyadenylated RNA in the chloroplast: the exoribonuclease 100RNP/PNPase displays high binding affinity for poly(A) sequence. J Biol Chem 272: 17648-17653
22. Lisitsky I, Schuster G (1999) Preferential degradation of polyadenylated and polyuridinylated RNAs by bacterial exoribonuclease polynucleotide phosphorylase (PNPase). Eur J Biochem 261: 468-474
23. Mitchel P, Petfalski E, Shevchenko A, Mann M, Tollervey D (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′ to 5′ exoribonucleases. Cell 91: 457-466
24. Nickelsen J, Van-Dillewijn J, Rahire M, Rochaix JD (1994) Determinants for stability of the chloroplast psbD RNA are located with in its short leader region in Chlamydomonas reinhardtii. EMBO J 13: 3182-3191
25. Nickelsen N (1998) Chloroplast RNA stability. In J-D Rochaix, M Goldschmidt-Clermont, S Merchant, eds, Molecular Biology of Chlamydomonas: Chloroplasts and Mitochondria, Vol 7. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 151-163
26. Nierlich DP, Murakawa GJ (1996) The decay of bacterial messenger RNA. Prog Nucleic Acid Res Mol Biol 52: 153-216
27. Rapp JC, Baumgartner BJ, Mullet J (1992) Quantitative analysis of transcription and RNA levels of 15 barley chloroplast genes: transcription rates and mRNA levels vary over 300-fold; predicted mRNA stabilities vary 30-fold. J Biol Chem 267: 21404-21411
28. Rott R, Levy H, Drager RG, Stern DB, Schuster G (1998) 3′-Processed mRNA is preferentially translated in Chlamydomonas reinhardtii chloroplasts. Mol Cell Biol 18: 4605-4611
29. Sachs AB, Sarnow P, Hentze MW (1997) Starting at the beginning, middle, and end: translation initiation in eukaryotes. Cell 89: 831-838
30. 6/f complex. Plant J 6: 503-512
31. Sarkar N (1997) Polyadenylation of mRNA in prokaryotes. Annu Rev Biochem 66: 173-197
32. Shiina T, Allison L, Maliga P (1998) rbcL transcript levels in tobacco plastids are independent of light: reduced dark transcription rates is compensated by increased mRNA stability. Plant Cell 10: 1713-1722
33. Wahle W, Keller W (1996) The biochemistry of polyadenylation. Trends Biochem Sci 21: 247-250