Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana

Nature

Volumn 391, Issue 6666, 1998, Pages 485-488

  Bevan, M ^a   Bancroft, I ^a   Bent, E ^a   Love, K ^a   Goodman, H ^b   Dean, C ^a   Bergkamp, R ^c   Dirkse, W ^c   Van Staveren, M ^c   Stiekema, W ^c   Drost, L ^a   Ridley, P ^a   Hudson, S A ^a   Patel, K ^a   Murphy, G ^a   Piffanelli, P ^a   Wedler, H ^d   Wedler, E ^d   Wambutt, R ^d   Weitzenegger, T ^e   Pohl, T M ^e   Terryn, N ^f   Gielen, J ^f   Villarroel, R ^f   De Clerck, R ^f   Van Montagu, M ^f   Lecharny, A ^g   Auborg, S ^g   Gy, I ^g   Kreis, M ^g   Lao, N ^h   Kavanagh, T ^h   Hempel, S ⁱ   Kotter, P ⁱ   Entian, K D ⁱ   Rieger, M ^j   Schaeffer, M ^j   Funk, B ^j   Mueller Auer, S ^j   Silvey, M ^k   James, R ^k   Montfort, A ^l   Pons, A ^l   Puigdomenech, P ^l   Douka, A ^m   Voukelatou, E ^m   Milioni, D ^m   Hatzopoulos, P ^m   Piravandi, E ⁿ   Obermaier, B ⁿ   Hilbert, H ^o   Dusterhoft A ^o   Moores, T ^p   Jones, J D G ^p   Eneva, T ^q   Palme, K ^q   Benes, V ^r   Rechman, S ^r   Ansorge, W ^r   Cooke, R ^s   Berger, C ^s   Delseny, M ^s   Voet, M ^t   Volckaert, G ^t   Mewes, H W ^u   Klosterman, S ^u   Schueller, C ^u   Chalwatzis, N ^u   more..

^a JOHN INNES CENTRE   (United Kingdom)

^b HARVARD MEDICAL SCHOOL   (United States)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d AGOWA GmbH   (Germany)

^e GATC GmbH   (Germany)

^f DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^g CNRS   (France)

^h TRINITY COLLEGE DUBLIN   (Ireland)

ⁱ SRD GmbH   (Germany)

^j Genotype GmbH   (Germany)

^k UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^l DEPT OF ENVIRONMENTAL CHEMISTRY   (Spain)

^m AGRICULTURAL UNIVERSITY OF ATHENS   (Greece)

ⁿ MediGene AG   (Germany)

^o QIAGEN GMBH   (Germany)

^p SAINSBURY LABORATORY   (United Kingdom)

^q Max Delbruck Laboratorium der Max Planck Gesellschaft   (Germany)

^r EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^s UNIVERSITÉ DE PERPIGNAN   (France)

^t LABORATORY OF GENE TECHNOLOGY   (Belgium)

^u MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

more..

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG;

ARABIDOPSIS; ARTICLE; CHROMOSOME 4; GENE CLUSTER; GENE MAPPING; GENE SEQUENCE; NONHUMAN; PRIORITY JOURNAL; YEAST ARTIFICIAL CHROMOSOME;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS);

EID: 0006922663     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/35140     Document Type: Article

References (29)

1. Meyerowitz, E. M. & Somerville, C. R. (eds) Arabidopsis (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1994).
2. Schmidt, R. et al. Physical map and orgnaization of Arabidopsis chromosome 4. Science 270, 480-483 (1995).
3. Zachgo, E. A. et al. A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res. 6, 19-25 (1996).
4. Schmidt, R., Love, K., West, J., Lenehan, Z. & Dean, C. Description of 31 YAC contigs spanning the majority of Arabidopsis thaliana chromosome 5. Plant J. 11, 563-572 (1997).
5. Bancroft, I. et al. A strategy involving the use of high-redundancy YAC subclone libraries facilitates the contiguous representation in cosmid and BAC clones of 1.7 Mb of the genome of Arabidopsis thaliana. Weeds World 4, 1-9 (1997).
6. Sato, S. et al. Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones. DNA Res. 4, 215-230 (1997).
7. Pearson, W. R. & Lipman, D. J. Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA 85, 2444-2448 (1988).
8. Riley, M. Functions of gene products in E. coli, Microbiol. Rev. 57, 862-952 (1993).
9. Mewes, H.-W. et al. Overview of the yeast genome. Nature 387 (suppl.) 7-84 (1997).
10. White, S. E., Habera, L. F. & Wessler, S. R. Retrotransposons in the flanking regions of normal plant genes: A role for copia-like elements in the evolution fo gene structure and expression. Proc. Natl Acad. Sci. USA 91, 11792-11796 (1994).
11. Konieczny, A., Voytas, D. F., Cummings, M. P. & Ausubel, F. M. A superfamily of Arabidopsis thaliana retrotransposons. Genetics 127, 801-809 (1991).
12. SanMiguel, P. et al. Nested retrotransposons in the intergenic regions of the maize genome. Science 274, 765-768 (1996).
13. Wessler, S. R., Bureau, T. E. & White, S. E. LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr. Opin. Genet. Dev. 5, 814-821 (1995).
14. Parker, J. E. et al. The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the Toll and interleukin-1 receptors with N and L6. The Plant Cell 9, 879-894 (1997).
15. Pear, J. R., Kawagoe, Y., Screckengost, W. E., Delmer, D. P. & Stalker, D. M. Higher plants contain homologues of the bacterial celA genes encoding the catalytic subunit of cellulose synthase. Proc. Natl Acad. Sci. USA 93, 12637-12642 (1996).
16. Back, K. & Chappell, J. Cloning and bacterial expression of a sesquiterpene cyclase from Hyoscamus muticus and its molecular comparison to related terpene cyclases. J. Biol. Chem. 270, 7375-7381 (1995).
17. Gavin, K. A., Hidaka, M. & Stillman, B. Conserved initiator proteins in eukaryotes. Science 270, 1667-1671 (1995).
18. Fishel, R. et al. The human mutator gene homologue MHS2 and its association with hereditary nonpolyposis colon cancer. Cell 75, 1027-1038 (1993).
19. Marcus, G. A., Silverman, N., Berger, S. L., Horiuchi, J. & Guarente, L. Functional similarity and physical association between GCN5 and ADA2: putative transcriptional adaptors. EMBO J. 13, 4807-4815 (1994).
20. Neuwald, A. F. & Landsman, D. GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein. Trends Biochem. Sci. 22, 154-155 (1997).
21. Oppenheimer, D. G. et al. Essential role for a kinesin-like protein in Arabidopsis trichome morphogenesis. Proc. Natl Acad. Sci. USA 94, 6261-6266 (1997).
22. Pongs, O. et al. Frequenin-a novel calcium-binding protein that modulates synaptic efficacy in the Drosophila nervous system. Neuron 11, 15-28 (1993).
23. Friesen, H., Lunz, R., Doyle, S. & Segall, I. Mutation in the SPS1-encoded protein kinase of Saccharomyces cerevisiae leads to defects in transcription and morphology during spore formation. Genes Dev. 8, 2162-2175 (1994).
24. Gabor Miklos, G. & Rubin, G. M. The role of the genome project in determining gene function: Insights from model organisms. Cell 86, 521-529 (1996).
25. Wilson, R. et al. 2.2Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature 368, 32-38 (1994).
26. Meyerowitz, E. M. Plants and the logic of development. Genetics 145, 5-9 (1997.
27. Bent, E., Johnson, S., Bancroft, I. BAC representation of two low-copy regions of the genome of Arabidopsis thaliana. The Plant J. (in the press).
28. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
29. Hebsgaard, S. M. et al. Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information. Nucleic Acids Res. 24, 3439-3452 (1996).