A large scale analysis of cDNA in Arabidopsis thaliana: Generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries

DNA Research

Volumn 7, Issue 3, 2000, Pages 175-180

  Asamizu, Erika ^a   Nakamura, Yasukazu ^a   Sato, Shusei ^a   Tabata, Satoshi ^a  

^a KAZUSA DNA RESEARCH INSTITUTE   (Japan)

Author keywords

Arabidopsis thaliana; cDNA; EST

Indexed keywords

ARABIDOPSIS THALIANA;

COMPLEMENTARY DNA; POLYADENYLIC ACID;

ARABIDOPSIS; ARTICLE; EXPRESSED SEQUENCE TAG; GENE LIBRARY; GENETICS; METABOLISM; MOLECULAR GENETICS; TISSUE DISTRIBUTION;

ARABIDOPSIS; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE LIBRARY; MOLECULAR SEQUENCE DATA; POLY A; TISSUE DISTRIBUTION;

EID: 0034733243     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/7.3.175     Document Type: Article

References (18)

1. Meinke, D. W., Cherry, J. M., Dean, C. D., Rounsley, S., and Koornneef, M. 1998, Arabidopsis thaliana: a model plant for genome analysis, Science, 282, 662-682.
2. Lin, X., Kaul, S., Rounsley, S. et al. 1999, Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana, Nature, 402, 761-768.
3. Mayer, K., Schüller, C., Wambutt, R. et al. 1999, Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana, Nature, 402, 769-777.
4. Bevan, M. 1997, Objective: the complete sequence of a plant genome, Plant Cell, 9, 476-478.
5. Asamizu, E., Nakamura, Y., Sato, S., Fukuzawa, H., and Tabata, S. 1999, A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags, DNA Res., 6, 369-373.
6. Asamizu, E., Nakamura, Y., Sato, S., and Tabata, S. 2000, Generation of 7,137 Non-redundant Expressed Sequence Tags from a Legume, Lotus japonicus, DNA Res., 7, 127-130.
7. Nikaido, I., Asamizu, E., Nakajima, M., Nakamura, Y., Saga, N., and Tabata, S. 2000, Construction of a gene catalogue of a marine red alga, Porphyra yezoensis. I. Generation of 10,154 expressed sequence tags, DNA Res., this issue.
8. Höfte, H., Desprez, T., Amselem, J. et al. 1993, An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana, Plant J., 4, 1051-1061.
9. Cooke, R., Raynal, M., Laudié, M. et al. 1996, Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs, Plant J., 9, 101-124.
10. Newman, T., de Bruijn, F. J., Green, P. et al. 1994, Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones, Plant Physiol., 106, 1241-1255.
11. Horsch, R. B., Fry, J., Hoffman, N., Neidermeyer, J., Rogers, S. G., and Fraley, R. T. 1988, Plant Molecular Biology Manual, Kluwer Academic Publishers, A5: 1-9.
12. Bonaldo, M. F., Lennon, G., and Soares, M. B. 1996, Normalization and subtraction: two approaches to facilitate gene discovery, Genome Res., 6, 791-806.
13. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403-410.
14. Sato, S., Nakamura, Y., Kaneko, T., Katoh, T., Asamizu, E., and Tabata, S. 2000, Structural Analysis of Arabidopsis thaliana Chromosome 3. I. Sequence Features of the Regions of 4,504,864 bp Covered by Sixty P1 and TAC Clones, DNA Res., 7, 131-135.
15. Sato, S., Nakamura, Y., Kaneko, T. et al. 2000, Structural Analysis of Arabidopsis thaliana Chromosome 5. X. Sequence Features of the Regions of 3,076,755 bp Covered by Sixty P1 and TAG Clones, DNA Res., 7, 31-63.
16. Neuteboom, L. W., Ng, J. M., Kuyper, M., Clijdesdale, O. R., Hooykaas, P. J., and van der Zaal, B. J. 1999, Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation, Plant Mol. Biol., 39, 273-287.
17. Kim, H. U. and Chung, T. Y. 1997, Characterization of three anther-specific genes isolated from Chinese cabbage, Plant Mol. Biol., 33, 193-198.
18. Parcy, F., Valon, C., Kohara, A., Misera, S., and Giraudat, J. 1997, The ABSCISIC ACID-INSENSITIVE3, FUSCA3, and LEAFY COTYLEDON1 loci act in concert to control multiple aspects of Arabidopsis seed development, Plant Cell, 9, 1265-1277.