-
14
-
-
0032229196
-
Sources of systematic error in functional annotation of genomes: Domain rearrangement, non-orthologous gene displacement and operon disruption
-
(1998)
In Silico Biol
, vol.1
, pp. 57-67
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
16
-
-
0033638015
-
CAST: An iterative algorithm for the complexity analysis of sequence tracts
-
(2000)
Bioinformatics
, vol.16
, pp. 915-922
-
-
Promponas, V.1
Enright, A.2
Tsoka, S.3
Kreil, D.4
Leroy, C.5
Hamodrakas, S.6
Sander, C.7
Ouzounis, C.8
-
25
-
-
0033034745
-
Automated genome sequence analysis and annotation
-
(1999)
Bioinformatics
, vol.15
, pp. 391-412
-
-
Andrade, M.A.1
Brown, N.P.2
Leroy, C.3
Hoersch, S.4
de Daruvar, A.5
Reich, C.6
Franchini, A.7
Tamames, J.8
Valencia, A.9
Ouzounis, C.10
Sander, C.11
-
27
-
-
0001883220
-
Building dictionaries of 1D and 3D motifs by mining the unaligned 1D sequences of 17 archaeal and bacterial genomes
-
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB '99). AAAI Press, Menlo Park, CA
-
(1999)
-
-
Rigoutsos, I.1
Gao, Y.2
Floratos, A.3
Parida, L.4
-
30
-
-
0002302625
-
Motif discovery without alignment or enumeration
-
Proceedings of the 2nd Annual ACM International Conference on Computational Molecular Biology (RECOMB). New York, NY. ACM Press, New York, NY
-
(1998)
-
-
Rigoutsos, I.1
Floratos, A.2
-
33
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
(1977)
J. Mol. Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.1
Koetzle, T.2
Williams, G.3
Meyer, E.4
Brice, M.5
Rodgers, J.6
Kennard, O.7
Shimanouchi, J.8
Tasumi, M.9
-
34
-
-
0035166973
-
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 37-40
-
-
Apweiler, R.1
Attwood, T.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.10
-
39
-
-
0025344377
-
Analysis of the protein-coding content of the sequence of human cytomegalovirus strain AD169
-
(1990)
Curr. Top. Microbiol. Immunol
, vol.154
, pp. 125-169
-
-
Chee, M.1
Bankier, A.2
Beck, S.3
Bohni, R.4
Brown, C.5
Cerny, R.6
Horsnell, T.7
Hutchinson, C.8
Kouzarides, T.9
Martignetti, J.10
-
40
-
-
0030760547
-
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function
-
(1997)
Comput. Appl. Biosci
, vol.13
, pp. 481-483
-
-
Andrade, M.1
Casari, G.2
de Daruvar, A.3
Sander, C.4
Schneider, R.5
Tamames, J.6
Valencia, A.7
Ouzounis, C.8
-
46
-
-
0035117320
-
Genome sequences and great expectations
-
(2000)
Genome Biol
, vol.2
-
-
Iliopoulos, I.1
Tsoka, S.2
Andrade, M.3
Janssen, P.4
Audit, B.5
Tramontano, A.6
Valencia, A.7
Leroy, C.8
Sander, C.9
Ouzounis, C.10
-
50
-
-
0029133912
-
Exploring the Mycoplasma capricolum genome: A minimal cell reveals its physiology
-
(1995)
Mol. Microbiol
, vol.16
, pp. 955-967
-
-
Bork, P.1
Ouzounis, C.2
Casari, G.3
Schneider, R.4
Sander, C.5
Dolan, M.6
Gilbert, W.7
Gillevet, P.8
-
53
-
-
0035860458
-
Protein mechanisms of evolution in Rickettsia conorii and R. prowazekii
-
(2001)
Science
, vol.293
, pp. 2093-2098
-
-
Ogata, H.1
Audic, S.2
Renesto-Audiffren, P.3
Fournier, P.E.4
Barbe, V.5
Samson, D.6
Roux, V.7
Cossart, P.8
Weissenbach, J.9
Claverie, J.M.10
Raoult, D.11
-
54
-
-
0035925904
-
Whole genome sequencing of meticillin-resistant Staphylococcus aureus
-
(2001)
Lancet
, vol.357
, pp. 1225-1240
-
-
Kuroda, M.1
Ohta, T.2
Uchiyama, I.3
Baba, T.4
Yuzawa, H.5
Kobayashi, I.6
Cui, L.7
Oguchi, A.8
Aoki, K.9
Nagai, Y.10
-
55
-
-
0035919670
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
-
(2001)
Science
, vol.293
, pp. 498-506
-
-
Tettelin, H.1
Nelson, K.E.2
Paulsen, I.T.3
Eisen, J.A.4
Read, T.D.5
Peterson, S.6
Heidelberg, J.7
DeBoy, R.T.8
Haft, D.H.9
Dodson, R.J.10
-
56
-
-
0034659939
-
Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 2311-2314
-
-
Shirai, M.1
Hirakawa, H.2
Kimoto, M.3
Tabuchi, M.4
Kishi, F.5
Ouchi, K.6
Shiba, T.7
Ishii, K.8
Hattori, M.9
Kuhara, S.10
Nakazawa, T.11
-
58
-
-
0032561496
-
Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis
-
(1998)
Science
, vol.282
, pp. 754-759
-
-
Stephens, R.1
Kalman, S.2
Lammel, C.3
Fan, J.4
Marathe, R.5
Aravind, L.6
Mitchell, W.7
Olinger, L.8
Tatusov, R.9
Zhao, Q.10
Koonin, E.11
Davis, R.12
-
59
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
-
(1996)
Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.1
White, O.2
Olsen, G.3
Zhou, L.4
Fleischmann, R.5
Sutton, G.6
Blake, J.7
FitzGerald, L.8
Clayton, R.9
Gocayne, J.10
-
60
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
Kennedy, S.P.2
Mahairas, G.G.3
Berquist, B.4
Pan, M.5
Shukla, H.D.6
Lasky, S.R.7
Baliga, N.8
Thorsson, V.9
Sbrogna, J.10
-
61
-
-
0034945083
-
The complete genome of the Crenarchaeote Sulfolobus solfataricus P2
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 7835-7840
-
-
Qunxin, S.1
Singh, R.2
Confalonieri, F.3
Zivanovic, Y.4
Allard, G.5
Awayez, M.J.6
Chan-Weiher, C.C.-Y.7
Clausen, I.G.8
Curtis, B.A.9
De Moors, A.10
-
62
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.1
Gocayne, J.2
White, O.3
Adams, M.4
Clayton, R.5
Fleischmann, R.6
Bult, C.7
Kerlavage, A.8
Sutton, G.9
Kelley, M.10
-
64
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.1
Plunkett, G.2
Bloch, C.3
Perna, N.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.8
Rode, C.9
Mayhew, G.F.10
-
65
-
-
0030835739
-
The complete genome sequence of the gastric pathogen Helicobacter pylori
-
(1997)
Nature
, vol.388
, pp. 539-547
-
-
Tomb, J.-F.1
White, O.2
Kerlavage, A.3
Clayton, R.4
Sutton, G.5
Fleischmann, R.6
Ketchum, K.7
Klenk, H.8
Gill, S.9
Dougherty, B.10
-
66
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochete, Borrelia burgdorferi
-
(1997)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.1
Casjens, S.2
Huang, W.3
Sutton, G.4
Clayton, R.5
Lathigra, R.6
White, O.7
Ketchum, K.8
Dodson, R.9
Hickey, E.10
-
67
-
-
0032568375
-
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
-
(1998)
Nature
, vol.392
, pp. 353-358
-
-
Deckert, G.1
Warren, P.2
Gaasterland, T.3
Young, W.4
Lenox, A.5
Graham, D.6
Overbeek, R.7
Snead, M.8
Keller, M.9
Aujay, M.10
-
68
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
Gordon, S.7
Eiglmeier, K.8
Gas, S.9
Barry, C.10
-
69
-
-
0032953228
-
Comparative genomes of C. pneumoniae and C. trachomatis
-
(1999)
Nature Genet
, vol.21
, pp. 385-389
-
-
Kalman, S.1
Mitchell, W.2
Marathe, R.3
Lammel, C.4
Fan, J.5
Hyman, R.6
Olinger, L.7
Grimwood, J.8
Davis, R.9
Stephens, R.10
-
70
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.1
Clayton, R.2
Gill, S.3
Gwinn, M.4
Dodson, R.5
Haft, D.6
Hickey, E.7
Peterson, J.8
Nelson, W.9
Ketchum, K.10
-
71
-
-
13044313472
-
Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1
-
(1999)
Science
, vol.286
, pp. 1571-1577
-
-
White, O.1
Eisen, J.2
Heidelberg, J.3
Hickey, E.4
Peterson, J.5
Dodson, R.6
Haft, D.7
Gwinn, M.8
Nelson, W.9
Richardson, D.10
-
72
-
-
0035807385
-
Genome sequence of Yersinia pestis, the causative agent of plague
-
(2001)
Nature
, vol.413
, pp. 523-527
-
-
Parkhill, J.1
Wren, B.2
Thomson, N.3
Titball, R.4
Holden, M.5
Prentice, M.6
Sebaihia, M.7
James, K.8
Churcher, C.9
Mungall, K.10
-
73
-
-
0031589946
-
The yeast genome directory
-
(1997)
Nature
, vol.387
, Issue.SUPPL.
, pp. 5-105
-
-
-
74
-
-
0032509302
-
Genome sequence of the nematode C. elegans: A platform for investigating biology
-
The C. elegans Sequencing Consortium
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
75
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.1
Celniker, S.2
Holt, R.3
Evans, C.4
Gocayne, J.5
Amanatides, P.6
Scherer, S.7
Li, P.8
Hoskins, R.9
Galle, R.10
-
76
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
The Genome International Sequencing Consortium
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
77
-
-
0035895505
-
The sequence of the human genome
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, C.1
Adams, M.2
Myers, E.3
Li, P.4
Mural, R.5
Sutton, G.6
Smith, H.7
Yandell, M.8
Evans, C.9
Holt, R.10
|