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Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations
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Juretschko S., Timmermann G., Schmid M., Schleifer K.H., Pommerening-Roser A., Koops H.P., Wagner M. Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl Environ Microbiol. 64:1998;3042-3051.
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0027299353
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Probing activated sludge with oligonucleotides specific for proteobacteria: Inadequacy of culture-dependent methods for describing microbial community structure
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Wagner M., Amann R., Lemmer H., Schleifer K.-H. Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol. 59:1993;1520-1525.
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8
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0028271364
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Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge
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Wagner M., Erhart R., Manz W., Amann R., Lemmer H., Wedi D., Schleifer K.-H. Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl Environ Microbiol. 60:1994;792-800.
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9
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Edited by Bitton G. New York: John Wiley & Sons, Inc.; in press. Detailed review on the application of molecular methods to investigate activated-sludge and biofilms
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Loy A, Daims H, Wagner M: Activated sludge - Molecular techniques for determining community composition. In The Encyclopedia of Environmental Microbiology. Edited by Bitton G. New York: John Wiley & Sons, Inc.; in press. Detailed review on the application of molecular methods to investigate activated-sludge and biofilms.
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The Encyclopedia of Environmental Microbiology
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Loy, A.1
Daims, H.2
Wagner, M.3
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10
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0033108163
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Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present in very low frequency in activated sludge
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Snaidr J., Fuchs B., Wallner G., Wagner M., Schleifer K.-H., Amann R. Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present in very low frequency in activated sludge. Environ Microbiol. 1:1999;125-135.
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Snaidr, J.1
Fuchs, B.2
Wallner, G.3
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Schleifer, K.-H.5
Amann, R.6
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11
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0030741576
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Phylogenetic analysis and in situ identification of bacteria in activated sludge
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Snaidr J., Amann R., Huber I., Ludwig W., Schleifer K.-H. Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol. 63:1997;2884-2896.
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Snaidr, J.1
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12
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0034054086
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Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis
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Layton A.C., Karanth P.N., Lajoie C.A., Meyers A.J., Gregory I.R., Stapleton R.D., Taylor D.E., Sayler G.S. Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis. Appl Environ Microbiol. 66:2000;1167-1174.
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Layton, A.C.1
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Stapleton, R.D.6
Taylor, D.E.7
Sayler, G.S.8
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13
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0035989129
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The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach
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This manuscript provides for the first time an almost complete overview on the microbial composition of activated-sludge from a full-scale WWTP. Almost 100 16S rRNA gene sequences retrieved from activated-sludge were sequenced and many new specific probes for FISH analyses were designed and applied
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Juretschko S., Loy A., Lehner A., Wagner M. The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Syst Appl Microbiol. 25:2002;84-99. This manuscript provides for the first time an almost complete overview on the microbial composition of activated-sludge from a full-scale WWTP. Almost 100 16S rRNA gene sequences retrieved from activated-sludge were sequenced and many new specific probes for FISH analyses were designed and applied.
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Syst Appl Microbiol
, vol.25
, pp. 84-99
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Juretschko, S.1
Loy, A.2
Lehner, A.3
Wagner, M.4
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14
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0035286749
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Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm
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Gieseke A., Purkhold U., Wagner M., Amann R., Schramm A. Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Appl Environ Microbiol. 67:2001;1351-1362.
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Appl Environ Microbiol
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Gieseke, A.1
Purkhold, U.2
Wagner, M.3
Amann, R.4
Schramm, A.5
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15
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0034096495
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Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation
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Schmid M., Twachtmann U., Klein M., Strous M., Juretschko S., Jetten M., Metzger J.W., Schleifer K.H., Wagner M. Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. Syst Appl Microbiol. 23:2000;93-106.
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Syst Appl Microbiol
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Schmid, M.1
Twachtmann, U.2
Klein, M.3
Strous, M.4
Juretschko, S.5
Jetten, M.6
Metzger, J.W.7
Schleifer, K.H.8
Wagner, M.9
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16
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0035653625
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Cultivation-independent, semiautomatic determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization
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Advanced image analysis techniques are presented that allow the determination of absolute cell concentrations of uncultured bacteria in complex environments. Using this technique the in situ number of ammonia oxidisers in a full-scale WWTP was determined
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Daims H., Ramsing N.B., Schleifer K.H., Wagner M. Cultivation-independent, semiautomatic determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization. Appl Environ Microbiol. 67:2001;5810-5818. Advanced image analysis techniques are presented that allow the determination of absolute cell concentrations of uncultured bacteria in complex environments. Using this technique the in situ number of ammonia oxidisers in a full-scale WWTP was determined.
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Appl Environ Microbiol
, vol.67
, pp. 5810-5818
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Daims, H.1
Ramsing, N.B.2
Schleifer, K.H.3
Wagner, M.4
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17
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26544465669
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Filamentous bacteria in activated sludge - Current taxonomic status and ecology
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Edited by Bitton G. New York: John Wiley & Sons, Inc.; in press
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Kämpfer P, Wagner M: Filamentous bacteria in activated sludge - Current taxonomic status and ecology. In The Encyclopedia of Environmental Microbiology. Edited by Bitton G. New York: John Wiley & Sons, Inc.; in press.
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The Encyclopedia of Environmental Microbiology
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Kämpfer, P.1
Wagner, M.2
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18
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0036024816
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Filamentous microorganisms observed in industrial activated sludge plants
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in press
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Eikelboom DH, Geurkink B: Filamentous microorganisms observed in industrial activated sludge plants. Water Sci Technol 2002, in press.
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(2002)
Water Sci Technol
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Eikelboom, D.H.1
Geurkink, B.2
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19
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0035163571
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Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives
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Transmission electron microscopy and the full-cycle rRNA approach were used in this very nice paper to investigate uncultured, but numerically important, filaments in activated-sludge
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Hugenholtz P., Tyson G.W., Webb R.I., Wagner A.M., Blackall L.L. Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Appl Environ Microbiol. 67:2001;411-419. Transmission electron microscopy and the full-cycle rRNA approach were used in this very nice paper to investigate uncultured, but numerically important, filaments in activated-sludge.
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(2001)
Appl Environ Microbiol
, vol.67
, pp. 411-419
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Hugenholtz, P.1
Tyson, G.W.2
Webb, R.I.3
Wagner, A.M.4
Blackall, L.L.5
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20
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0034490015
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The filamentous bacterial morphotype 'Nostocoida limicola' I contains at least two previously described genera in the low G+C Gram positive bacteria
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Liu J.R., Burrell P., Seviour E.M., Soddell J.A., Blackall L.L., Seviour R.J. The filamentous bacterial morphotype 'Nostocoida limicola' I contains at least two previously described genera in the low G+C Gram positive bacteria. Syst Appl Microbiol. 23:2000;528-534.
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Syst Appl Microbiol
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Liu, J.R.1
Burrell, P.2
Seviour, E.M.3
Soddell, J.A.4
Blackall, L.L.5
Seviour, R.J.6
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21
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0029859273
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16S rRNA analysis of isolates obtained from Gram-negative, filamentous bacteria micromanipulated from activated sludge
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Bradford D., Hugenholtz P., Seviour E.M., Cunningham M.A., Stratton H., Seviour R.J., Blackall L.L. 16S rRNA analysis of isolates obtained from Gram-negative, filamentous bacteria micromanipulated from activated sludge. Syst Appl Microbiol. 19:1996;334-343.
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Syst Appl Microbiol
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Bradford, D.1
Hugenholtz, P.2
Seviour, E.M.3
Cunningham, M.A.4
Stratton, H.5
Seviour, R.J.6
Blackall, L.L.7
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22
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0034106945
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Candidatus Nostocoida limicola', a filamentous bacterium from activated sludge
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Blackall L.L., Seviour E.M., Bradford D., Rossetti S., Tandoi V., Seviour R.J. Candidatus Nostocoida limicola', a filamentous bacterium from activated sludge. Int J Syst Evol Microbiol. 50:2000;703-709.
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Int J Syst Evol Microbiol
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Blackall, L.L.1
Seviour, E.M.2
Bradford, D.3
Rossetti, S.4
Tandoi, V.5
Seviour, R.J.6
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23
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0037022424
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Phylogeny of the filamentous bacterium Eikelboom Type 1851, and design and application of a 16S rRNA targeted oligonucleotide probe for its fluorescence in situ identification in activated sludge
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Beer M., Seviour E.M., Kong Y., Cunningham M., Blackall L.L., Seviour R.J. Phylogeny of the filamentous bacterium Eikelboom Type 1851, and design and application of a 16S rRNA targeted oligonucleotide probe for its fluorescence in situ identification in activated sludge. FEMS Microbiol Lett 2002, 207:179-183.
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FEMS Microbiol Lett
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, pp. 179-183
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Beer, M.1
Seviour, E.M.2
Kong, Y.3
Cunningham, M.4
Blackall, L.L.5
Seviour, R.J.6
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24
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0032748483
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Phylogenetic relationships of filamentous sulfur bacteria (Thiothrix spp. and Eikelboom type 021N bacteria) isolated from wastewater-treatment plants and description of Thiothrix eikelboomii sp. nov., Thiothrix unzii sp. nov., Thiothrix fructosivorans sp. nov. and Thiothrix defluvii sp. Nov
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Howarth R., Unz R.F., Seviour E.M., Seviour R.J., Blackall L.L., Pickup R.W., Jones J.G., Yaguchi J., Head I.M. Phylogenetic relationships of filamentous sulfur bacteria (Thiothrix spp. and Eikelboom type 021N bacteria) isolated from wastewater-treatment plants and description of Thiothrix eikelboomii sp. nov., Thiothrix unzii sp. nov., Thiothrix fructosivorans sp. nov. and Thiothrix defluvii sp. Nov. Int J Syst Bacteriol. 49:1999;1817-1827.
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Int J Syst Bacteriol
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Howarth, R.1
Unz, R.F.2
Seviour, E.M.3
Seviour, R.J.4
Blackall, L.L.5
Pickup, R.W.6
Jones, J.G.7
Yaguchi, J.8
Head, I.M.9
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25
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0033754288
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Phylogenetic analysis of and oligonucleotide probe development for Eikelboom type 021N filamentous bacteria isolated from bulking activated sludge
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This paper shows that filaments of the Eikelboom type 021N form at least three different phylogenetic lineages and presents probes for specific in situ detection of these groups in activated-sludge
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Kanagawa T., Kamagata Y., Aruga S., Kohno T., Horn M., Wagner M. Phylogenetic analysis of and oligonucleotide probe development for Eikelboom type 021N filamentous bacteria isolated from bulking activated sludge. Appl Environ Microbiol. 66:2000;5043-5052. This paper shows that filaments of the Eikelboom type 021N form at least three different phylogenetic lineages and presents probes for specific in situ detection of these groups in activated-sludge.
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(2000)
Appl Environ Microbiol
, vol.66
, pp. 5043-5052
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Kanagawa, T.1
Kamagata, Y.2
Aruga, S.3
Kohno, T.4
Horn, M.5
Wagner, M.6
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26
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0030941425
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The filamentous morphotype Eikelboom Type 1863 is not a single genetic entity
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Seviour E.M., Blackall L.L., Christensson C., Hugenholtz P., Cunningham M.A., Bradford D., Stratton H.M., Seviour R.J. The filamentous morphotype Eikelboom Type 1863 is not a single genetic entity. J Appl Microbiol. 82:1997;411-421.
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(1997)
J Appl Microbiol
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, pp. 411-421
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Seviour, E.M.1
Blackall, L.L.2
Christensson, C.3
Hugenholtz, P.4
Cunningham, M.A.5
Bradford, D.6
Stratton, H.M.7
Seviour, R.J.8
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27
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0001898317
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Phylogenetic and physiological characterization of a Nostocoida limicola-like organism isolated from activated sludge
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Edited by Tandoi V, Passino R, Blundo CM. Rome, Italy
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Schade M, Beimfohr C, Lemmer H: Phylogenetic and physiological characterization of a Nostocoida limicola-like organism isolated from activated sludge. Third IWA International Specialised Conference on Microorganisms in Activated Sludge and Biofilm Processes. Edited by Tandoi V, Passino R, Blundo CM. Rome, Italy 2001: 54-60.
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(2001)
Third IWA International Specialised Conference on Microorganisms in Activated Sludge and Biofilm Processes
, pp. 54-60
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Schade, M.1
Beimfohr, C.2
Lemmer, H.3
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28
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0001894254
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Phylogenetic analysis and in situ identification of Nostocoida limicola-like filamentous bacteria in activated sludge from industrial wastewater treatment plants
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Edited by Tandoi V, Passino R, Blundo CM. Rome, Italy
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Snaidr J, Beimfohr C, Levantesi C, Rossetti S, van der Waarde J, Geurkink B, Eikelboom D, Lemaitre M, Tandoi V: Phylogenetic analysis and in situ identification of Nostocoida limicola-like filamentous bacteria in activated sludge from industrial wastewater treatment plants. Third IWA International Specialised Conference on Microorganisms in Activated Sludge and Biofilm Processes. Edited by Tandoi V, Passino R, Blundo CM. Rome, Italy 2001: 61-67.
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(2001)
Third IWA International Specialised Conference on Microorganisms in Activated Sludge and Biofilm Processes
, pp. 61-67
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Snaidr, J.1
Beimfohr, C.2
Levantesi, C.3
Rossetti, S.4
Van der Waarde, J.5
Geurkink, B.6
Eikelboom, D.7
Lemaitre, M.8
Tandoi, V.9
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29
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0035150759
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Phylogeny of the filamentous bacterium 'Nostocoida limicola' III from activated sludge
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Liu J.R., McKenzie C.A., Seviour E.M., Webb R.I., Blackall L.L., Saint C.P., Seviour R.J. Phylogeny of the filamentous bacterium 'Nostocoida limicola' III from activated sludge. Int J Syst Evol Microbiol. 51:2001;195-202.
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Int J Syst Evol Microbiol
, vol.51
, pp. 195-202
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Liu, J.R.1
McKenzie, C.A.2
Seviour, E.M.3
Webb, R.I.4
Blackall, L.L.5
Saint, C.P.6
Seviour, R.J.7
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30
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0035206494
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Design and application of oligonucleotide probes for fluorescent in situidentification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge
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Liu J.R., Seviour R.J. Design and application of oligonucleotide probes for fluorescent in situidentification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge. Environ Microbiol. 3:2001;551-560.
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(2001)
Environ Microbiol
, vol.3
, pp. 551-560
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Liu, J.R.1
Seviour, R.J.2
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31
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0034009096
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Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants
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Davenport R.J., Curtis T.P., Goodfellow M., Stainsby F.M., Bingley M. Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants. Appl Environ Microbiol. 66:2000;1158-1166.
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(2000)
Appl Environ Microbiol
, vol.66
, pp. 1158-1166
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Davenport, R.J.1
Curtis, T.P.2
Goodfellow, M.3
Stainsby, F.M.4
Bingley, M.5
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32
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0034902759
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Quantifying filamentous microorganisms in activated sludge before, during, and after an incident of foaming by oligonucleotide probe hybridizations and antibody staining
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Oerther D.B., de los Reyes F.L. I.I.I., de los Reyes M.F., Raskin L. Quantifying filamentous microorganisms in activated sludge before, during, and after an incident of foaming by oligonucleotide probe hybridizations and antibody staining. Water Res. 35:2001;3325-3336.
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Water Res
, vol.35
, pp. 3325-3336
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Oerther, D.B.1
De los Reyes, F.L.2
De los Reyes, M.F.3
Raskin, L.4
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33
-
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0036133114
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Role of filamentous microorganisms in activated sludge foaming: Relationship of mycolata levels to foaming initiation and stability
-
Very thorough study that elegantly demonstrates how molecular techniques can be used to better understand foaming problems in WWTPs
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de los Reyes F.L. I.I.I., Raskin L. Role of filamentous microorganisms in activated sludge foaming: relationship of mycolata levels to foaming initiation and stability. Water Res. 36:2002;445-459. Very thorough study that elegantly demonstrates how molecular techniques can be used to better understand foaming problems in WWTPs.
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(2002)
Water Res
, vol.36
, pp. 445-459
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-
De los Reyes F.L. III1
Raskin, L.2
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34
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0036024736
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Microthrix parvicella, a specialized lipid consumer in anaerobic-aerobic activated sludge plants
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in press. An excellent paper that demonstrates the potential of the MAR method to reveal the in situ physiology of microorganisms that are difficult to culture. The authors provide an interesting hypothesis for the competitive advantage of M. parvicella in nutrient removal plants
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Nielsen PH, Roslev P, Dueholm TE, Lund Nielsen J: Microthrix parvicella, a specialized lipid consumer in anaerobic-aerobic activated sludge plants. Water Sci Technol 2002, in press. An excellent paper that demonstrates the potential of the MAR method to reveal the in situ physiology of microorganisms that are difficult to culture. The authors provide an interesting hypothesis for the competitive advantage of M. parvicella in nutrient removal plants.
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(2002)
Water Sci Technol
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Nielsen, P.H.1
Roslev, P.2
Dueholm, T.E.3
Lund Nielsen, J.4
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35
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0032986790
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Combination of fluorescent in situ hybridization and microautoradiography - A new tool for structure-function analyses in microbial ecology
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Lee N., Nielsen P.H., Andreasen K.H., Juretschko S., Nielsen J.L., Schleifer K.-H., Wagner M. Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl Environ Microbiol. 65:1999;1289-1297.
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Appl Environ Microbiol
, vol.65
, pp. 1289-1297
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Lee, N.1
Nielsen, P.H.2
Andreasen, K.H.3
Juretschko, S.4
Nielsen, J.L.5
Schleifer, K.-H.6
Wagner, M.7
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36
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0034551726
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Studies on the in situ physiology of Thiothrix spp. present in activated sludge
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Nielsen P.H., de Muro M.A., Nielsen J.L. Studies on the in situ physiology of Thiothrix spp. present in activated sludge. Environ Microbiol. 2:2000;389-398.
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Environ Microbiol
, vol.2
, pp. 389-398
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Nielsen, P.H.1
De Muro, M.A.2
Nielsen, J.L.3
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37
-
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0034466757
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Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
-
This paper provides an encompassing framework for 16S rRNA gene and amoA gene based diversity surveys of ammonia-oxidising bacteria and discusses limitations of existing probes and primers for the detection of these bacteria
-
Purkhold U., Pommering-Röser A., Juretschko S., Schmid M.C., Koops H.-P., Wagner M. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol. 66:2000;5368-5382. This paper provides an encompassing framework for 16S rRNA gene and amoA gene based diversity surveys of ammonia-oxidising bacteria and discusses limitations of existing probes and primers for the detection of these bacteria.
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(2000)
Appl Environ Microbiol
, vol.66
, pp. 5368-5382
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-
Purkhold, U.1
Pommering-Röser, A.2
Juretschko, S.3
Schmid, M.C.4
Koops, H.-P.5
Wagner, M.6
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38
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0034775280
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Ammonia-oxidizing bacteria: A model for molecular microbial ecology
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