Design and application of oligonucleotide probes for fluorescent in situ identification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge

Environmental Microbiology

Volumn 3, Issue 9, 2001, Pages 551-560

  Liu, J R ^a   Seviour, R J ^a  

^a LA TROBE UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINOBACTERIA; IN SITU HYBRIDIZATION, FLUORESCENCE; OLIGONUCLEOTIDE PROBES; RNA, RIBOSOMAL, 16S; SEWAGE;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); LIMICOLA; NOSTOCOIDA; NOSTOCOIDA LIMICOLA; NOSTOCOIDA LIMICOLA I; PROKARYOTA;

EID: 0035206494     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2001.00229.x     Document Type: Article

References (42)

1. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic and environmental studies in microbiology
2. In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes
3. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
4. Application of microautoradiography to the study of substrate uptake by filamentous microorganisms in activated sludge
5. Growth of Microthrix parvicella in nutrient removal activated sludge plants: Studies of in situ physiology
6. 'Microthrix parvicella' is a novel, deep branching member of the actinomycetes subphylum
7. 'Candidatus Nostocoida limicola', a filamentous bacterium from activated sludge
8. 16S rRNA analysis obtained from gram negative, filamentous bacteria micro-manipulated from activated sludge
9. Management of papermill wastes: The role of filamentous microorganisms as indicators
10. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
11. Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants
12. Filamentous organisms observed in activated sludge
13. Development and use of fluorescent in situ hybridization probes for the detection and identification of "Microthrix parvicella" in activated sludge
14. Microbial evolution, diversity and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
15. Evidence that Thiothrix spp., Eikelboom type 021N bacteria and Leucothrix mucor DSM 2157 share a common ancestry
16. Detection and cultivation of filamentous bacteria from activated sludge
17. Phylogenetic analysis of and oligonucleotide probe development for Eikelboom type 021N filamentous bacteria isolated from bulking activated sludge
18. Combination of fluorescent in situ hybridization and microautoradiography - A new tool for structure- function analyses in microbial ecology
19. The filamentous bacterial morphotype 'Nostocoida limicola' I contains at least two previously described genera in the low G+C gram positive bacteria
20. Phylogeny of the filamentous bacterium 'Nostocoida limicola' III from activated sludge
21. Phylogenetic oligodeoxynucleotide probes for the major sub-classes of proteobacteria: Problems and solutions
22. Three isolates of novel polyphosphate-accumulating gram-positive cocci, obtained from activated sludge, belong to a new genus, Tetrasphaera gen. nov. and description of two new species, Tetrasphaera japonica sp. nov. & Tetrasphaera australiensis sp. nov.
23. Specific oligonucleotide probes for in situ detection of a major group of gram positive bacteria with low DNA G+C content
24. Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms
25. Monitoring a widespread bacterial group: In situ detection of planctomycetes with 16S rRNA-targeted probe
26. Detection of sphingomonads and in situ identification in activated sludge using 16S rRNA-targeted oligonucleotide probes
27. Variability of type 021N in activated sludge as determined by in situ substrate uptake pattern and in situ hybridization with fluorescent rRNA targeted probes
28. Studies on the in situ physiology of Thiothrix spp. present in activated sludge
29. In situ probing of gram-positive bacteria with high DNA G-C content using 23S rRNA-targeted oligonucleotides
30. Isolation and identification of an Eikelboom type 1863 strain as Acinetobacter johnsonii
31. Phylogenetic, physiological characterization of a Nostocoida limicola-like organism isolated from activated sludge
32. Current taxonomic status of filamentous bacteria found in activated sludge plants
33. The filamentous morphotype Eikelboom type 1863 is not a single genetic entity
34. Phylogenetic analysis and in situ identification of Nostocoida limicola-like filamentous bacteria from industrial wastewater treatment plants
35. Bacteriology of activated sludge, in particular the filamentous bacteria
36. A national survey of activated sludge problems in the Czech Republic: Filaments, floc characteristics and activated sludge metabolic properties
37. Unravelling the extent of diversity within the order Planctomycetales
38. 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides