-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
2
-
-
0004270170
-
-
John Wiley & Sons, Inc., New York, N.Y.
-
Ausubel, F. M., R. Brent, E. Kinston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1991. Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N.Y.
-
(1991)
Current Protocols in Molecular Biology
-
-
Ausubel, F.M.1
Brent, R.2
Kinston, E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
3
-
-
0031687820
-
Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
-
Braker, G., A. Fesefeldt, and K.-P. Witzel. 1998. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl. Environ. Microbiol. 64:3769-3775.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3769-3775
-
-
Braker, G.1
Fesefeldt, A.2
Witzel, K.-P.3
-
4
-
-
0034016758
-
Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities
-
Braker, G., J. Zhou, L. Wu, A. H. Devol, and J. M. Tiedje. 2000. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities. Appl. Environ. Microbiol. 66:2096-2104.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2096-2104
-
-
Braker, G.1
Zhou, J.2
Wu, L.3
Devol, A.H.4
Tiedje, J.M.5
-
5
-
-
0029502734
-
Simultaneous nitrate and oxygen respiration in coastal sediments: Evidence for discrete diagenesis
-
Brandes, J. A., and A. H. Devol. 1995. Simultaneous nitrate and oxygen respiration in coastal sediments: evidence for discrete diagenesis. J. Mar. Res. 52:771-797.
-
(1995)
J. Mar. Res.
, vol.52
, pp. 771-797
-
-
Brandes, J.A.1
Devol, A.H.2
-
6
-
-
0030817782
-
Analysis of mer gene subclasses within bacterial communities in soils and sediments resolved by fluorescent-PCR-restriction fragment length polymorphism profiling
-
Bruce, K. D. 1997. Analysis of mer gene subclasses within bacterial communities in soils and sediments resolved by fluorescent-PCR-restriction fragment length polymorphism profiling. Appl. Environ. Microbiol. 63:4914-4919.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4914-4919
-
-
Bruce, K.D.1
-
7
-
-
0019897854
-
210Pb-derived sediment accumulation and mixing rates for the Washington continental slope
-
210Pb-derived sediment accumulation and mixing rates for the Washington continental slope. Mar. Chem. 48:135-164.
-
(1982)
Mar. Chem.
, vol.48
, pp. 135-164
-
-
Carpenter, R.1
Peterson, M.L.2
Bennett, J.T.3
-
8
-
-
0033012295
-
Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field
-
Chin, K.-J., T. Lukow, and R. Conrad. 1999. Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field. Appl. Environ. Microbiol. 65:2341-2349.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2341-2349
-
-
Chin, K.-J.1
Lukow, T.2
Conrad, R.3
-
9
-
-
84977322088
-
Denitrification in continental shelf sediments has major impact on the oceanic nitrogen budget
-
Christensen, J. P., J. W. Murray, A. H. Devol, and L. A. Codispoti. 1987. Denitrification in continental shelf sediments has major impact on the oceanic nitrogen budget. Global Biogeochem. Cycles 1:97-116.
-
(1987)
Global Biogeochem. Cycles
, vol.1
, pp. 97-116
-
-
Christensen, J.P.1
Murray, J.W.2
Devol, A.H.3
Codispoti, L.A.4
-
10
-
-
36849147442
-
Is the ocean loosing nitrate?
-
Codispoti, L. A. 1995. Is the ocean loosing nitrate? Nature 376:724.
-
(1995)
Nature
, vol.376
, pp. 724
-
-
Codispoti, L.A.1
-
11
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
12
-
-
0028594902
-
High abundance of archaea in antarctic marine picoplankton
-
DeLong, E. F., K. Y. Wu, B. B. Prézelin, and R. V. M. Jovine. 1994. High abundance of archaea in antarctic marine picoplankton. Nature 371:695-697.
-
(1994)
Nature
, vol.371
, pp. 695-697
-
-
Delong, E.F.1
Wu, K.Y.2
Prézelin, B.B.3
Jovine, R.V.M.4
-
13
-
-
0027833494
-
Benthic fluxes and nitrogen cycling in sediments of the continental margin of the eastern North Pacific
-
Devol, A. H., and J. P. Christensen. 1993. Benthic fluxes and nitrogen cycling in sediments of the continental margin of the eastern North Pacific. J. Mar. Res. 51:345-372.
-
(1993)
J. Mar. Res.
, vol.51
, pp. 345-372
-
-
Devol, A.H.1
Christensen, J.P.2
-
14
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
Felsenstein, J. 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:521-565.
-
(1988)
Annu. Rev. Genet.
, vol.22
, pp. 521-565
-
-
Felsenstein, J.1
-
15
-
-
0018673497
-
Early oxidation of organic matter in pelagic sediments of the equatorial Atlantic, suboxic diagenesis Geochim
-
Froehlich, P. N., G. P. Klinkhammer, M. L. Bender, N. A. Luedtke, G. R. Heath, D. Cullen, P. Dauphin, D. Hammond, B. Hartman, and V. Maynard. 1979. Early oxidation of organic matter in pelagic sediments of the equatorial Atlantic, suboxic diagenesis Geochim. Cosmochim. Acta 43:1075-1090.
-
(1979)
Cosmochim. Acta
, vol.43
, pp. 1075-1090
-
-
Froehlich, P.N.1
Klinkhammer, G.P.2
Bender, M.L.3
Luedtke, N.A.4
Heath, G.R.5
Cullen, D.6
Dauphin, P.7
Hammond, D.8
Hartman, B.9
Maynard, V.10
-
16
-
-
0038236052
-
-
Genetics Computer Group, Madison, Wis.
-
Genetics Computer Group. 1994. GCG program manual. Genetics Computer Group, Madison, Wis.
-
(1994)
GCG Program Manual
-
-
-
17
-
-
0033770992
-
Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom
-
Gonzáles, J. M., R. Simó, R. Massana, J. S. Covert, E. O. Casamayor, C. Pedrós-Alió, and M. A. Moran. 2000. Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl. Environ. Microbiol. 66:4237-4246.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4237-4246
-
-
Gonzáles, J.M.1
Simó, R.2
Massana, R.3
Covert, J.S.4
Casamayor, E.O.5
Pedrós-Alió, C.6
Moran, M.A.7
-
18
-
-
0041125886
-
Sedimentary organic matter preservation: A test for selective degradation under oxic conditions
-
Hedges, J. I., F. S. Hu, A. H. Devol, H. E. Hartnett, E. Tsamakis, and R. G. Keil. 1999. Sedimentary organic matter preservation: a test for selective degradation under oxic conditions. Am. J. Sci. 299:529-555.
-
(1999)
Am. J. Sci.
, vol.299
, pp. 529-555
-
-
Hedges, J.I.1
Hu, F.S.2
Devol, A.H.3
Hartnett, H.E.4
Tsamakis, E.5
Keil, R.G.6
-
19
-
-
0033988391
-
Identification of the major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products
-
Horz, H.-P., J.-H. Rotthauwe, T. Luckow, and W. Liesack. 2000. Identification of the major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products. J. Microb. Methods 39:197-204.
-
(2000)
J. Microb. Methods
, vol.39
, pp. 197-204
-
-
Horz, H.-P.1
Rotthauwe, J.-H.2
Luckow, T.3
Liesack, W.4
-
20
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W.-T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4516-4522
-
-
Liu, W.-T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
21
-
-
0344765523
-
Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization
-
Llobet-Brossa, E., R. Rosselló-Mora, and R. I. Amann. 1998. Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl. Environ. Microbiol. 64:2691-2696.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2691-2696
-
-
Llobet-Brossa, E.1
Rosselló-Mora, R.2
Amann, R.I.3
-
22
-
-
0343503030
-
Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
-
Lüdemann, H., I. Arth, and W. Liesack. 2000. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl. Environ. Microbiol. 66:754-762.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 754-762
-
-
Lüdemann, H.1
Arth, I.2
Liesack, W.3
-
23
-
-
0030423830
-
Denitrification in marine sediments: A model study
-
Middelburg, J. J., K. Soetaert, P. M. J. Herman, and C. H. R. Heip. 1996. Denitrification in marine sediments: a model study. Global Biogeochem. Cycles 10:661-673.
-
(1996)
Global Biogeochem. Cycles
, vol.10
, pp. 661-673
-
-
Middelburg, J.J.1
Soetaert, K.2
Herman, P.M.J.3
Heip, C.H.R.4
-
24
-
-
0032812081
-
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
-
Moeseneder, M., J. M. Arrieta, G. Muyzer, C. Winter, and G. Herndl. 1999. Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65:3518-3525.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3518-3525
-
-
Moeseneder, M.1
Arrieta, J.M.2
Muyzer, G.3
Winter, C.4
Herndl, G.5
-
25
-
-
0031847928
-
Diversity of deep-sea hydrothermal vent Archaea from Loihi Seamount, Hawaii
-
Moyer, C. L., J. M. Tiedje, F. C. Dobbs, and D. M. Karl. 1998. Diversity of deep-sea hydrothermal vent Archaea from Loihi Seamount, Hawaii. Deep-Sea Res. 45:303-317.
-
(1998)
Deep-Sea Res.
, vol.45
, pp. 303-317
-
-
Moyer, C.L.1
Tiedje, J.M.2
Dobbs, F.C.3
Karl, D.M.4
-
26
-
-
0025229493
-
Organic matter diagenesis in the northeast Pacific: Transition from aerobic red clay to suboxic hemipelagic sediments
-
Murray, J. W., and K. M. Kuivila. 1990. Organic matter diagenesis in the northeast Pacific: transition from aerobic red clay to suboxic hemipelagic sediments. Deep-Sea Res. 37:59-80.
-
(1990)
Deep-Sea Res.
, vol.37
, pp. 59-80
-
-
Murray, J.W.1
Kuivila, K.M.2
-
27
-
-
42949153686
-
Life at high salt concentrations
-
M. Dworkin (ed.), Springer-Verlag, New York, N.Y.
-
Oren, A. 1999. Life at high salt concentrations. In M. Dworkin (ed.), The prokaryotes. Springer-Verlag, New York, N.Y. (http://rizzo.springer-ny.com: 6336/contents/.)
-
(1999)
The Prokaryotes
-
-
Oren, A.1
-
28
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
-
Osborn, A. M., E. R. B. Moore, and K. N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.B.2
Timmis, K.N.3
-
29
-
-
0034079104
-
Effect of soil aggregate size on methanogenesis and archaeal community structure in anoxic rice field soil
-
Ramakrishnan, B., T. Lueders, R. Conrad, and M. Friedrich. 2000. Effect of soil aggregate size on methanogenesis and archaeal community structure in anoxic rice field soil. FEMS Microbiol. Ecol. 32:261-270.
-
(2000)
FEMS Microbiol. Ecol.
, vol.32
, pp. 261-270
-
-
Ramakrishnan, B.1
Lueders, T.2
Conrad, R.3
Friedrich, M.4
-
30
-
-
0034071156
-
Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis
-
Scala, D. J., and L. J. Kerkhof. 2000. Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 66:1980-1986.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1980-1986
-
-
Scala, D.J.1
Kerkhof, L.J.2
-
31
-
-
0348101665
-
The denitrifying prokarotes
-
M. Dworkin (ed.), Springer-Verlag, New York, N.Y.
-
Shapleigh, J. P. 1999. The denitrifying prokarotes. In M. Dworkin (ed.), The prokaryotes. Springer-Verlag, New York, N.Y. (http://rizzo.springer-ny.com: 6336/contents/.)
-
(1999)
The Prokaryotes
-
-
Shapleigh, J.P.1
-
32
-
-
0002521330
-
Ordination
-
R. H. G. Jongman, C. J. F. ter Braak, and O. F. R van Tongeren (ed.), Cambridge University Press, Cambridge, United Kingdom
-
ter Braak, C. J. F. 1995. Ordination, p. 91-105. In R. H. G. Jongman, C. J. F. ter Braak, and O. F. R van Tongeren (ed.), Data analysis in community and landscape ecology. Cambridge University Press, Cambridge, United Kingdom.
-
(1995)
Data Analysis in Community and Landscape Ecology
, pp. 91-105
-
-
Ter Braak, C.J.F.1
-
33
-
-
0031879713
-
Association of marine archaea with the digestive tracts of two marine fish species
-
van der Maarel, M. J. E. C., R. R. D. Artz, R. Haanstra, and L. J. Forney. 1998. Association of marine archaea with the digestive tracts of two marine fish species. Appl. Environ. Microbiol. 64:2894-2898.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2894-2898
-
-
Van Der Maarel, M.J.E.C.1
Artz, R.R.D.2
Haanstra, R.3
Forney, L.J.4
-
34
-
-
0002497474
-
Extraction of microbial community DNA from soils
-
A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (ed.), Kluwer Academic Publishers, Dordrecht, The Netherlands
-
van Elsas, J. D., and K. Smalla. 1995. Extraction of microbial community DNA from soils, p. 1.3.3/1-1.3.3/11. In A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(1995)
Molecular Microbial Ecology Manual
, pp. 1331-13311
-
-
Van Elsas, J.D.1
Smalla, K.2
-
35
-
-
0026051050
-
Importance of continental margins in the marine biogeochemical cycling of carbon and nitrogen
-
Walsh, J. J. 1991. Importance of continental margins in the marine biogeochemical cycling of carbon and nitrogen. Nature 350:53-55.
-
(1991)
Nature
, vol.350
, pp. 53-55
-
-
Walsh, J.J.1
-
36
-
-
0025366456
-
16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
-
Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65.
-
(1990)
Nature
, vol.345
, pp. 63-65
-
-
Ward, D.M.1
Weller, R.2
Bateson, M.M.3
-
37
-
-
35148814913
-
The methanogenic bacteria
-
M. Dworkin (ed.), Springer-Verlag, New York, N.Y.
-
Whitman, W. B., T. L. Bowen, and D. R. Boone. 1999. The methanogenic bacteria. In M. Dworkin (ed.), The prokaryotes. Springer-Verlag, New York, N.Y. (http://rizzo.springer-ny.com:6336/contents/.)
-
(1999)
The Prokaryotes
-
-
Whitman, W.B.1
Bowen, T.L.2
Boone, D.R.3
-
38
-
-
0000266664
-
The denitrifying prokaryotes
-
A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), Springer Verlag, New York, N.Y.
-
Zumft, W. G. 1992. The denitrifying prokaryotes, p. 554-582. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes. Springer Verlag, New York, N.Y.
-
(1992)
The Prokaryotes
, pp. 554-582
-
-
Zumft, W.G.1
|