Xenopus LSm proteins bind U8 snoRNA via an internal evolutionarily conserved octamer sequence

Molecular and Cellular Biology

Volumn 22, Issue 12, 2002, Pages 4101-4112

  Tomasevic, Nenad ^a   Peculis, Brenda A ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; PROTEIN LSM; PROTEIN U8; SMALL NUCLEOLAR RNA; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; BIOGENESIS; COMPLEX FORMATION; CONTROLLED STUDY; CROSS LINKING; GENE IDENTIFICATION; IN VITRO STUDY; IN VIVO STUDY; MOLECULAR RECOGNITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN PROCESSING; PROTEIN PURIFICATION; PROTEIN STABILITY; RIBOSOME; SEQUENCE HOMOLOGY; XENOPUS;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CELLS, CULTURED; CONSERVED SEQUENCE; CROSS-LINKING REAGENTS; EVOLUTION, MOLECULAR; FEMALE; MOLECULAR SEQUENCE DATA; OOCYTES; RIBONUCLEOPROTEIN, U4-U6 SMALL NUCLEAR; RIBONUCLEOPROTEINS, SMALL NUCLEAR; RNA, SMALL NUCLEAR; RNA, SMALL NUCLEOLAR; RNA-BINDING PROTEINS; XENOPUS; XENOPUS PROTEINS;

AMPHIBIA; ANIMALIA; REPTILIA;

EID: 0036261559     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.22.12.4101-4112.2002     Document Type: Article

References (60)

1. A doughnut-shaped heteromer of human Sm-like proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
2. The Sm domain is an ancient RNA-binding motif with oligo(U) specificity
3. Guiding ribose methylation of rRNA
4. Antisense snoRNAs: A family of nucleolar RNAs with long complementarities to rRNA
5. The NIEHS Xenopus maternal EST project: Interim analysis of the first 13,879 ESTs from unfertilized eggs
6. A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs
7. A Sm-like protein complex that participates in mRNA degradation
8. The yeast nucleolar protein Cbf5p is involved in rRNA biosynthesis and interacts genetically with the RNA polymerase I transcription factor RRN3
9. Crystal structure of a heptameric Sm-like protein complex from archaea: Implications for the structure and evolution of snRNPs
10. Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast
11. Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins
12. Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP
13. The trimethylguanosine cap structure of U1 snRNA is a component of a bipartite nuclear targeting signal
14. Functions of LSm proteins in mRNA degradation and splicing
15. Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs
16. Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles
17. Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs
18. Precursors to the U3 small nucleolar RNA lack small nucleolar RNP proteins but are stabilized by La binding
19. Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability
20. The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase
21. Nucleolar localization elements in U8 snoRNA differ from sequences required for rRNA processing
22. Structure of spliceosomal snRNPs and their role in pre-mRNA splicing
23. U snRNP assembly and transport
24. Nucleocytoplasmic transport and snRNP assembly
25. Recruiting proteins to the RNA world
26. The small nucleolar RNAs
27. Characterization of Sm-like proteins in yeast and their association with U6 snRNA
28. cDNA sequence of the rat U snRNP-associated protein N: Description of a potential Sm epitope
29. Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNAs and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences
30. The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core
31. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
32. S-adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase
33. Sm-like proteins wRING the neck of mRNA
34. RNA processing: Pocket guides to ribosomal RNA
35. The sequence of the 5′ end of the U8 small nucleolar RNA is critical for 5.8S and 28S rRNA maturation
36. The U8 snoRNA gene family: Identification and characterization of distinct, functional U8 genes in Xenopus
37. Localization of the nucleolar protein NO38 in amphibian oocytes
38. The structure of the ITS2-proximal stem is required for pre-rRNA processing in yeast
39. Ribosomal RNA: Small nucleolar RNAs make their mark
40. Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte
41. Sequence and structural elements critical for U8 snRNP function in Xenopus oocytes are evolutionarily conserved
42. Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain LSm10, a new 14 kDa Sm D1-like protein
43. 3G cap hypermethylation of U1 small nuclear ribonucleoprotein (snRNP) in vitro: Evidence that the U1 small nuclear RNA-(guanosine-N2)-methyltransferase is a non-snRNP cytoplasmic protein that requires a binding site on the Sm core domain
44. Spliceosomal U snRNP core assembly: Sm proteins assemble onto an Sm site RNA nonanucleotide in a specific and thermodynamically stable manner
45. Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
46. Sm and Sm-like proteins belong to a large family: Identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs
47. Small RNA chaperones for ribosome biogenesis
48. Antinuclear antibodies: Diagnostic markers for autoimmune diseases and probes for cell biology
49. Yeast Sm-like proteins function in mRNA decapping and decay
50. The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast
51. Identification of a U8 snoRNA-specific binding protein
52. RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex
53. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus
54. Ribosome synthesis in Saccharomyces cerevisiae
55. Characterization of U6 snRNA-protein interactions
56. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution
57. Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Garlp in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure
58. A common core RNP structure shared between the small nucleolar box C/D RNPs and the spliceosomal U4 snRNP
59. Guided tours: From precursor snoRNA to functional snoRNP
60. Nop5p is a small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast