Precursors to the U3 small nucleolar RNA lack small nucleolar RNP proteins but are stabilized by la binding

Molecular and Cellular Biology

Volumn 20, Issue 15, 2000, Pages 5415-5424

  Kufel, Joanna ^a   Allmang, Christine ^a   Chanfreau, Guillaume ^b,c   Petfalski, Elisabeth ^a   Lafontaine, Denis L J ^a   Tollervey, David ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b INSTITUT PASTEUR   (France)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL RNA; PHOSPHOPROTEIN; SMALL NUCLEAR RIBONUCLEOPROTEIN; SMALL NUCLEAR RNA; STAPHYLOCOCCUS PROTEIN A;

ARTICLE; GENOTYPE; IMMUNOPRECIPITATION; METHYLATION; MODEL; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; QUALITY CONTROL; RNA ANALYSIS; RNA CLEAVAGE; RNA PROCESSING; RNA SYNTHESIS; YEAST;

BASE SEQUENCE; ENDORIBONUCLEASES; EXORIBONUCLEASES; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; MULTIENZYME COMPLEXES; NUCLEAR PROTEINS; PRECIPITIN TESTS; RECOMBINANT FUSION PROTEINS; RIBONUCLEASE III; RIBONUCLEOPROTEINS, SMALL NUCLEOLAR; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA STABILITY; RNA, SMALL NUCLEOLAR; RNA-BINDING PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; STAPHYLOCOCCAL PROTEIN A;

EUKARYOTA; STAPHYLOCOCCUS; STAPHYLOCOCCUS AUREUS;

EID: 0033912221     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.20.15.5415-5424.2000     Document Type: Article

References (59)

1. About Elela, S., and M. Ares, Jr. 1998. Depletion of yeast RNase III blocks correct U2 3′ end formation and results in polyadenylated but functional U2 snRNA. EMBO J. 17:3738-3746.
2. Abou Elela, S., H. Igel, and M. Ares, Jr. 1996. RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site. Cell 85:115-124.
3. Achsel, T., H. Brahms, B. Kastner, A. Bachi, M. Wilm, and R. Lührmann. 1999. A doughnut-shaped heteromer of human Sm-like proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro. EMBO J. 18:5789-5802.
4. Ali, N., and A. Siddiqui. 1997. The La antigen hinds 5′ noncoding region of the hepatitis C virus RNA in the context of the initiator AUG codon and stimulates internal ribosome entry site-mediated translation. Proc. Natl. Acad. Sci. USA 94:2249-2254.
5. Allmang, C., J. Kufel, G. Chanfreau, P. Mitchell, E. Petfalski, and D. Tollervey. 1999. Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J. 18:5399-5410.
6. Allmang, C., E. Petfalski, A. Podtelejnikov, M. Mann, D. Tollervey, and P. Mitchell. 1999. The yeast exosome and human PM-Scl are related complexes of 3′->5′ exonucleases. Genes Dev. 13:2148-2158.
7. Amberg, D. C., A. L. Goldstein, and C. N. Cole. 1992. Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA. Genes Dev. 6:1173-1189.
8. Anderson, J., L. Phan, R. Cuesta, B. A. Carlson, M. Pak, K. Asano, G. R. Bjork, M. Tamame, and A. G. Hinnebusch. 1998. The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Genes Dev. 12:3650-3662.
9. Anderson, J. S. J., and R. P. Parker. 1998. The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SK12 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J. 17:1497-1506.
10. Baudin, A., O. Ozier-Kalogeropoulos, A. Denouel, F. Lacroute, and C. Cullin. 1993. A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucleic Acids Res. 21:3329-3330.
11. Beltrame, M., and D. Tollervey. 1995. Base-pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J. 14:4350-4356.
12. Beltrame, M., and D. Tollervey. 1992. Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J. 11:1531-1542.
13. Caffarelli, E., M. Losito, C. Giorgi, A. Fatica, and I. Bozzoni. 1998. In vivo identification of nuclear factors interacting with the conserved elements of box C/D small nucleolar RNAs. Mol. Cell. Biol. 18:1023-1028.
14. Chanfreau, G., S. A. Elela, M. Ares, Jr., and C. Guthrie. 1997. Alternative 3′-end processing of U5 snRNA by RNase III. Genes Dev. 11:2741-2751.
15. Chanfreau, G., P. Legrain, and A. Jacquier. 1998. Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism. J. Mol. Biol. 284: 975-988.
16. Chanfreau, G., G. Rotondo, P. Legrain, and A. Jacquier. 1998. Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1. EMBO J. 17:3726-3737.
17. Cooper, M., L. H. Johnston, and J. D. Beggs. 1995. Identification and characterization of Uss1p (Sdb23p): a novel U6 snRNA-associated protein with significant similarity to core proteins of small nuclear ribonucleoproteins. EMBO J. 14:2066-2075.
18. Decker, C. J., and R. Parker. 1993. A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation. Genes Dev. 7:1632-1643.
19. Fan, H., J. L. Goodier, J. R. Chamberlain, D. R. Engelke, and R. J. Maraia. 1998. 5′ processing of tRNA precursors can be modulated by the human La antigen phosphoprotein. Mol. Cell. Biol. 18:3201-3211.
20. Gautier, T., T. Bergès, D. Tollervey, and E. Hurt. 1997. The nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis. Mol. Cell. Biol. 17:7088-7098.
21. Gietz, D., A. St. Jean, R. A. Woods, and R. H. Schiestl. 1992. Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 20:1425.
22. Goodall, G. J., K. Wiebauer, and W. Filipowicz. 1990. Analysis of pre-mRNA processing in transfected plant protoplasts. Methods Enzymol. 181:148-161.
23. Heise, T., L. G. Guidotti, and F. V. Chisari. 1999. La autoantigen specifically recognizes a predicted stem-loop in hepatitis B virus RNA. J. Virol. 73:5767-5776.
24. Hughes, J. M. X., and M. J. Ares. 1991. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J. 10:4231-4239.
25. Hughes, J. M. X., D. A. M. Konings, and G. Cesareni. 1987. The yeast homologue of U3 snRNA. EMBO J. 6:2145-2155.
26. Jansen, R., D. Tollervey, and E. C. Hurt. 1993. A U3 snoRNP protein with homology to splicing factor PRP4 and Gβ domains is required for ribosomal RNA processing. EMBO J. 12:2549-2558.
27. Kiss, T., C. Marshallsay, and W. Filipowicz. 1991. Alteration of the RNA polymerase specificity of U3 snRNA genes during evolution and in vitro. Cell 65:517-526.
28. Kufel, J., B. Dichtl, and D. Tollervey. 1999. Yeast Rnt1p is required for cleavage of the pre-ribosomal RNA in the 3′ ETS but not the 5′ ETS. RNA 5:909-917.
29. Lafontaine, D., and D. Tollervey. 1996. One-step PCR mediated strategy for the construction of conditionally expressed and epitope tagged yeast proteins. Nucleic Acids Res. 24:3469-3472.
30. Lafontaine, D. L. J., and D. Tollervey. 1999. Nop58p is a common component of the box C+D snoRNPs that is required for stability of the snoRNAs. RNA 5:455-467.
31. Lafontaine, D. L. J., and D. Tollervey. 2000. Synthesis and assembly of the box C+D small nucleolar RNPs. Mol. Cell. Biol. 20:2650-2659.
32. Lischwe, M. A., R. L. Ochs, R. Reddy, R. G. Cook, L. C. Yeoman, E. M. Tan, M. Reichlin, and H. Busch. 1985. Purification and partial characterization of a nucleolar scleroderma antigen (Mr=34,000; pI, 8.5) rich in NG, NG-dimethylarginine. J. Biol. Chem. 260:14304-14310.
33. Lygerou, Z., P. Mitchell, E. Petfalski, B. Séraphin, and D. Tollervey. 1994. The POP1 gene encodes a protein component common to the RNase MRP and RNase P ribonucleoproteins. Genes Dev. 8:1423-1433.
34. Madore, S. J., E. D. Wieben, and T. Pederson. 1984. Eukaryotic small ribonucleoproteins. Anti-La human autoantibodies react with U1 RNA-protein complexes. J. Biol. Chem. 259:1929-1933.
35. Mayes, A. E., L. Verdone, P. Legrain, and J. D. Beggs. 1999. Characterization of Sm-like proteins in yeast and their association with U6 snRNA. EMBO J. 18:4321-4331.
36. Mitchell, P., E. Petfalski, A. Shevchenko, M. Mann, and D. Tollervey. 1997 The exosome; a conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonuclease activities. Cell 91:457-466.
37. Mitchell, P., E. Petfalski, and D. Tollervey. 1996. The 3′-end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism. Genes Dev. 10:502-513.
38. Myslinski, E., V. Ségault, and C. Branlant. 1990. An intron in the genes for U3 small nucleolar RNAs of the yeast Saccharomyces cerevisiae. Science 247:1213-1216.
39. Pannone, B. K., D. Xue, and S. L. Wolin. 1998. A role for the yeast La protein in U6 snRNP assembly: evidence that the La protein is a molecular chaperone for RNA polymerase III transcripts. EMBO J. 17:7442-7453.
40. Parker, K. A., and J. A. Steitz. 1987. Structural analysis of the human U3 ribonucleoprotein particle reveal a conserved sequence available for base pairing with pre-rRNA. Mol. Cell. Biol. 7:2899-2913.
41. Petfalski, E., T. Dandekar, Y. Henry, and U. Tollervey. 1998. Processing of the precursors to small nucleolar RNAs and rRNAs requires common components. Mol. Cell. Biol. 18:1181-1189.
42. Rinke, J., and J. A. Steitz. 1982. Precursor molecules ai both human 5S ribosomal RNA and transfer RNAs are bound by a cellular protein reactive with anti-La lupus antibodies. Cell 29:149-159.
43. Salgado-Garrido, J., E. Bragado-Nilsson, S. Kandels-Lewis, and B. Seraphin. 1999. Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J. 18:3451-3462.
44. Schimmang, T., D. Tollervey, H. Kern, R. Frank, and E. C. Hurt. 1989. A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability. EMBO J. 8:4015-4024.
45. Seipelt, R. L., B. Zheng, A. Asuru, and B. C. Rymond. 1999. U1 snRNA is cleaved by RNase III and processed through an Sm site-dependent pathway. Nucleic Acids Res. 27:587-595.
46. Séraphin, B., and M. Rosbash. 1989. Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing. Cell 59:349-358.
47. Sharma, K., and D. Tollervey. 1999. Base pairing between U3 small nucleolar RNA and the 5′ end of 188 rRNA is required for pre-rRNA processing, Mol. Cell. Biol. 19:6012-6019.
48. Stefano, J. E. 1984. Purified lupus antigen La recognizes an oligouridylate stretch common to the 3′ termini of RNA polymerase III transcripts. Cell 36:145-154.
49. Suh, D., H. Busch, and R. Reddy. 1986. Isolation and characterization of a human U3 small nucleolar RNA gene. Biochem. Biophys. Res. Commun. 137:1133-1140.
50. Terns, M. P., C. Grimm, E. Lund, and J. E. Dahlberg. 1995. A common maturation pathway for small nucleolar RNAs. EMBO J. 14:4860-4871.
51. Tollervey, D. 1987. A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J. 6:4169-4175.
52. Tollervey, D., and I. W. Mattaj. 1987. Fungal small nuclear ribonucleoproteins share properties with plant and vertebrate U-snRNPs. EMBO J. 6:469-476.
53. Tyc, K., and J. A. Steitz. 1989. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J. 8:3113-3119.
54. van Hoof, A., P. Lennertz, and R. Parker. 2000. Three conserved members of the RNAse D family have unique and overlapping functions in the processing of 5S, 5.8S. U4, U5, RNase MRP and RNase P RNAs in yeast. EMBO J. 19:1357-1365.
55. van Hoof, A., P. Lennertz, and R. Parker. 2000. Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol. Cell. Biol. 20:441-452.
56. Van Horn, D. J., C. J. Yoo, D. Xue, H. Shi, and S. L. Wolin. 1997. The La protein in Schizosaccharomyces pombe: a conserved yet dispensable phosphoprotein that functions in tRNA maturation. RNA 3:1434-1443.
57. Watkins, N. J., D. R. Newman, J. F. Kuhn, and E. S. Maxwell. 1998. In vitro assembly of the mouse U14 snoRNP core complex and identification of a 65-kDa box C/D-binding protein. RNA 4:582-593.
58. Xue, D., D. Rubinson, B. K. Pannone, C. J. Yoo, and S. L. Wolin. 2000. U snRNP assembly in yeast involves the La protein. EMBO J. 19:1650-1660.
59. Yoo, C. J., and S. L. Wolin. 1997. The yeast La protein is required for the 3' endonucleolytic cleavage that matures tRNA precursors. Cell 89:393-402.