Iterated profile searches with PSI-BLAST - A tool for discovery in protein databases

Trends in Biochemical Sciences

Volumn 23, Issue 11, 1998, Pages 444-447

  Altschul, Stephen F ^a   Koonin, Eugene V ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

POLYDEOXYRIBONUCLEOTIDE SYNTHASE;

ALGORITHM; AMINO ACID COMPOSITION; COMPUTER PROGRAM; DATA BASE; INFORMATION PROCESSING; INTERNET; PRIORITY JOURNAL; PROTEIN ANALYSIS; REVIEW; SEQUENCE ANALYSIS; STATISTICS; TECHNIQUE;

AMINO ACID SEQUENCE; DATABASES, FACTUAL; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PROTEIN CONFORMATION; SOFTWARE;

EID: 0031793928     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0968-0004(98)01298-5     Document Type: Review

References (30)

1. Pearson W. R., Lipman D. J. Proc. Natl. Acad. Sci. U. S. A. 85:1988;2444-2448.
2. Altschul S. F.et al. J. Mol. Biol. 215:1990;403-410.
3. Altschul S. F., Gish W. Methods Enzymol. 266:1996;460-480.
4. Altschul S. F.et al. Nucleic Acids Res. 25:1997;3389-3402.
5. Smith T. F., Waterman M. S. J. Mol. Biol. 147:1981;195-197.
6. Karlin S., Altschul S. F. Proc. Natl. Acad. Sci. U. S. A. 87:1990;2264-2268.
7. Karlin S., Altschul S. F. Proc. Natl. Acad. Sci. U. S. A. 90:1993;5873-5877.
8. Dembo A., Karlin S., Zeitouni O. Ann. Prob. 22:1994;2022-2039.
9. Waterman M. S., Vingron M. Stat. Sci. 9:1994;367-381.
10. Pearson W. R. J. Mol. Biol. 276:1998;71-84.
11. Pearson W. R. Protein Sci. 4:1995;1145-1160.
12. Holm L., Sander C. Structure. 5:1997;165-171.
13. Brenner S. E., Chothia C., Hubbard T. J. P. Proc. Natl. Acad. Sci. U. S. A. 95:1998;6073-6078.
14. Schneider T. S., Stormo G. D., Gold L., Ehrenfeucht A. J. Mol. Biol. 188:1986;415-431.
15. Gribskov M., McLachlin A. D., Eisenberg D. Proc. Natl. Acad. Sci. U. S. A. 84:1987;4355-4358.
16. Staden R. Comput. Appl. Biosci. 4:1989;53-60.
17. Gribskov M. Gene. 119:1992;107-111.
18. Tatusov R. L., Altschul S. F., Koonin E. V. Proc. Natl. Acad. Sci. U. S. A. 91:1994;12091-12095.
19. Yi T-M., Lander E.S. Protein Sci. 3:1994;1315-1328.
20. Bucher P., Karplus K., Moeri N., Hofmann K. Comput. Chem. 20:1996;3-23.
21. Durbin, R., Eddy, S., Krogh, A. and Mitchison, G. (1998) Biological Sequence Analysis. Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press.
22. Mushegian A. R.et al. Proc. Natl. Acad. Sci. U. S. A. 94:1997;5831-5836.
23. Huynen M.et al. J. Mol. Biol. 280:1998;323-326.
24. Aravind, L. et al. Trends Genet. (in press).
25. Bult C. J.et al. Science. 273:1996;1058-1073.
26. Sterky F., Holmberg A., Pettersson B., Uhlen M. Yeast. 12:1996;1091-1095.
27. Shuman S., Schwer B. Mol. Microbiol. 17:1995;405-410.
28. Wootton J. C., Federhen S. Methods Enzymol. 266:1996;554-571.
29. Lupas A. Methods Enzymol. 266:1996;513-525.
30. Zhang Z.et al. Nucleic Acids Res. 26:1998;3986-3990.