Bacterial genomics: The use of DNA microarrays and bacterial artificial chromosomes

Journal of Microbiological Methods

Volumn 49, Issue 3, 2002, Pages 275-284

  Ball, Kristen D ^a   Trevors, J T ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

Bacteria; Bacterial artificial chromosome (BAC); Expression; Genomics; Microarrays; Microorganism

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BACTERIAL GENE; BACTERIAL GENOME; CONTROLLED STUDY; DNA MICROARRAY; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; MICROBIAL GENETICS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; DRUG DESIGN; GENE EXPRESSION PROFILING; GENETICS; GENOMICS; REVIEW;

ANTIBIOTICS; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DRUG DESIGN; GENE EXPRESSION PROFILING; GENES, BACTERIAL; GENOMICS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHYLOGENY; SEQUENCE ANALYSIS; ANTI-BACTERIAL AGENTS;

BACTERIA (MICROORGANISMS);

ANTIINFECTIVE AGENT;

EID: 0036008791     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(01)00375-X     Document Type: Article

References (54)

1. Analytical microsystems: Emerging technologies for environmental biomonitoring
2. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
3. From the cover: The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies
4. The complete genome sequence of Escherichia coli K-12
5. Development of a cytomegalovirus vector for somatic gene therapy
6. Engineering Deinococcus radiodurans for metal remediation in radioactive mixed waste environments
7. Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics
8. When the chips are down
9. Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays
10. cDNA array analysis of altered gene expression in human endothelial cells in response to Chlamydia pneumoniae infection
11. The beta-lactam antibiotics: Past, present, and future
12. Exploring the metabolic and genetic control of gene expression on a genomic scale
13. Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2
14. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
15. Multiplexed biochemical assays with biological chips
16. Towards environmental toxicogenomics - Development of a flow-through, high-density DNA hybridization array and its application to ecotoxicity assessment
17. Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomes
18. Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria
19. BAC trimming: Minimizing clone overlaps
20. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
21. Development of two bacterial artificial chromosome shuttle vectors for a recombination-based cloning and regulated expression of large genes in mammalian cells
22. Global transposon mutagenesis and a minimal Mycoplasma genome
23. Imprinted expression of neuronatin from modified BAC transgenes reveals regulation by distinct and distant enhancers
24. Construction and characterization of a human bacterial artificial chromosome library
25. Tissue microarrays for high-throughput molecular profiling of tumor specimens
26. From genes to sequences to antibiotics: Prospects for future developments from microbial genomics
27. Genomic analysis
28. High density synthetic oligonucleotide arrays
29. Integrated bacterial genomics for the discovery of novel antimicrobials
30. How the host 'sees' pathogens: Global gene expression responses to infection
31. Molecular cloning of the guinea pig cytomegalovirus (GPCMV) genome as an infectious bacterial artificial chromosome (BAC) in Escherichia coli
32. Comparative genomics of prokaryotic GTP-binding proteins (the Era, Obg, EngA, ThdF (TrmE), YchF and YihA families) and their relationship to eukaryotic GTP-binding proteins (the DRG, ARF, RAB, RAN, RAS and RHO families)
33. High-throughput tissue microarray analysis to evaluate genes uncovered by cDNA microarray screening in renal cell carcinoma
34. Genomics and antimicrobial drug discovery
35. DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes
36. The minimal genome concept
37. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
38. Genes lost and genes found: Evolution of bacterial pathogenesis and symbiosis
39. Experimental pathology and breast cancer genetics: New technologies
40. Going Global
41. Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing
42. Genome-wide expression profiling in Escherichia coli K-12
43. Toward functional genomics in bacteria: Analysis of gene expression in Escherichia coli from a bacterial artificial chromosome library of Bacillus cereus
44. Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
45. Microarrays: Biotechnology's discovery platform for functional genomics
46. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector
47. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa consortium of the organization for nucleotide sequencing and analysis
48. Artificial chromosomes for antibiotic-producing actinomycetes
49. BAC-VAC, a novel generation of (DNA) vaccines: A bacterial artificial chromosome (BAC) containing a replication-competent, packaging-defective virus genome induces protective immunity against herpes simplex virus 1
50. Identification of genes responsible for improved cryoresistance in fermenting yeast cells
51. The COG database: New developments in phylogenetic classification of proteins from complete genomes
52. Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
53. Genome size in bacteria
54. The application of DNA microarrays in gene expression analysis