Plant molecular diversity and applications to genomics

Current Opinion in Plant Biology

Volumn 5, Issue 2, 2002, Pages 107-111

  Buckler IV, Edward S ^a   Thornsberry, Jeffry M ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME MAP; GENETIC VARIABILITY; GENETICS; GENOME; GENOMICS; MOLECULAR EVOLUTION; PHENOTYPE; PLANT; QUANTITATIVE TRAIT; REVIEW;

CHROMOSOME MAPPING; EVOLUTION, MOLECULAR; GENOME, PLANT; GENOMICS; PHENOTYPE; PLANTS; QUANTITATIVE TRAIT, HERITABLE; VARIATION (GENETICS);

EMBRYOPHYTA;

EID: 0036008763     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5266(02)00238-8     Document Type: Review

References (65)

1. Allozyme diversity in plant species
2. Properties of statistical tests of neutrality for DNA polymorphism data
3. Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.)
4. DNA polymorphism, haplotype structure and balancing selection in the Leavenworthia PgiC locus
5. High rates of polymorphism and recombination at the Opaque-2 locus in cultivated maize
6. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
7. Molecular diversity, structure and domestication of grasses
8. The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
9. Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test
10. Examining rates and patterns of nucleotide substitution in plants
11. Molecular population genetics of floral homeotic loci: Departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana
12. Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana
13. DNA polymorphism at the cytosolic phosphoglucose isomerase (PgiC) locus of the wild plant Arabidopsis thaliana
14. The effect of deleterious mutations on neutral molecular variation
15. Levels of naturally occurring DNA polymorphism correlate with recombination rate in D. melanogaster
16. Species and recombination effects on DNA variability in the tomato genus
17. DNA polymorphism in Lycopersicon and crossing-over per physical length
18. Positive correlation between recombination rates and levels of genetic variation in natural populations of sea beet (Beta vulgaris subsp. maritima)
19. The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome
20. Molecular evolution of the Adh1 locus in the genus Zea
21. Nucleotide polymorphism in the Adh1 locus of pearl millet (Pennisetum glaucum) (Poaceae)
22. Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana
23. Intra- and interspecific variation of the alcohol dehydrogenase locus region in wild plants Arabis gemmifera and Arabidopsis thaliana
24. Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): An evaluation of the background selection hypothesis
25. DNA variation in the 5′ upstream region of the Adh locus of the wild plants Arabidopsis thaliana and Arabis gemmifera
26. The effect of mating system differences on nucleotide diversity at the phosphoglucose isomerase locus in the plant genus Leavenworthia
27. Genetic diversity in Leavenworthia populations with different inbreeding levels
28. Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana
29. Molecular systematics and crop evolution
30. Investigation of the bottleneck leading to the domestication of maize
31. The molecular evolution of terminal ear1, a regulatory gene in the genus Zea
32. Speciation and domestication in maize and its wild relatives: Evidence from the globulin-1 gene
33. Evolution of maize inferred from sequence diversity of an Adh2 gene segment from archaeological specimens
34. The limits of selection during maize domestication
35. Evidence on the origin of cassava: Phylogeography of Manihot esculenta
36. Allelic diversity and gene genealogy at the self-incompatibility locus in the solanaceae
37. Evolutionary dynamics of plant R-genes
38. Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis
39. Genetic and molecular dissection of quantitative traits in rice
40. Mapping polygenes
41. Molecular dissection of quantitative traits: Progress and prospects
42. Gene-mapping with recombinant inbreds in maize
43. Molecular-marker-facilitated investigations of quantitative-trait loci in maize. I. Numbers, genomic distribution and types of gene action
44. Genetic and molecular dissection of naturally occurring variation
45. The evolution of apical dominance in maize
46. A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484 bp within an invertase gene
47. fw2.2: A quantitative trait locus key to the evolution of tomato fruit size
48. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS
49. Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time
50. A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2
51. Searching for genetic determinants in the new millennium
52. Protective effect of apolipoprotein E type 2 allele for late-onset Alzheimer disease
53. A cladistic-analysis of phenotypic associations with haplotypes inferred from restriction-endonuclease mapping or DNA-sequencing. 5. Analysis of case-control sampling designs - Alzheimer's-disease and the apoprotein-E locus
54. Linkage disequilibrium in the human genome
55. High-resolution haplotype structure in the human genome
56. Structure of linkage disequilibrium and phenotypic associations in the maize genome
57. Hardy-Weinberg and linkage equilibrium estimates in the BSSS and BSCB1 random mated populations
58. 3;5,13,14 and Type 2 diabetes mellitus: An association in American Indians with genetic admixture
59. Use of unlinked genetic markers to detect population stratification in association studies
60. Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe
61. Use of unlinked genetic markers to detect population stratification in association studies
62. Detecting association in a case-control study while correcting for population stratification
63. Inference of population structure using multilocus genotype data
64. Association mapping in structured populations
65. Dwarf8 polymorphisms associate with variation in flowering time