Prokaryotic structural maintenance of chromosomes (SMC) proteins: Distribution, phylogeny, and comparison with MukBs and additional prokaryotic and eukaryotic coiled-coil proteins

Gene

Volumn 278, Issue 1-2, 2001, Pages 253-264

  Soppa, Jörg ^a  

^a Inst fur Mikrobiol der Johann W   (Germany)

Author keywords

Chromosome segregation; Coiled coil domains; MukB; RAD18; SbcC; Structural maintenance of chromosomes proteins

Indexed keywords

BACTERIAL ENZYME; BACTERIAL PROTEIN; CHROMOSOME PROTEIN; RAD18 PROTEIN; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GENETICS; CARBOXY TERMINAL SEQUENCE; CHROMOSOME SEGREGATION; CYANOBACTERIUM; DATA BASE; ESCHERICHIA COLI; EUKARYOTE; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN SECONDARY STRUCTURE; SEQUENCE HOMOLOGY;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CELL CYCLE PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; CHROMOSOMES, BACTERIAL; CONSERVED SEQUENCE; DATABASES, PROTEIN; ESCHERICHIA COLI PROTEINS; EUKARYOTIC CELLS; GENOME; GRAM-NEGATIVE BACTERIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROKARYOTIC CELLS; PROTEIN STRUCTURE, TERTIARY;

EID: 0035980681     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(01)00733-8     Document Type: Article

References (41)

1. Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: Rapid evolution in warm-blooded vertebrates
2. Mammalian SMC3 C-terminal and Coiled-coil protein domains specifically bind palindromic DNA, do not block DNA ends, and prevent DNA bending
3. Chromosome replication, nucleoid segregation and cell division in Archaea
4. Archaea and the cell cycle
5. Characterization of a prokaryotic SMC protein involved in chromosome partitioning
6. Review: SMCs in the world of chromosome biology - From prokaryotes to higher eukaryotes
7. DNA cleavage and degradation by the SbcCD protein complex from Escherichia coli
8. The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA
9. A protein related to eukaryal and bacterial DNA-motor proteins in the hyperthermophilic archaeon Sulfolobus acidocaldarius
10. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
11. A novel SMC protein complex in Schizosaccharomyces pombe contains the Rad18 DNA repair protein
12. PEDANTic genome analysis
13. The Escherichia coli cell division proteins FtsY, FtsE and FtsX are inner membrane-associated
14. SMC proteins in bacteria: Condensation motors for chromosome segregation?
15. Bacillus subtilis SMC is required for proper arrangement of the chromosome and for efficient segregation of replication termini but not for bipolar movement of newly duplicated origin regions
16. Subcellular localization of Bacillus subtilis SMC, a protein involved in chromosome condensation and segregation
17. Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli
18. Chromosome cohesion, condensation, and separation
19. SMC-mediated chromosome mechanics: A conserved scheme from bacteria to vertebrates?
20. SMC protein complexes and higher-order chromosome dynamics
21. ATP-dependent aggregation of single-stranded DNA by a bacterial SMC homodimer
22. Closing the ring: Links between SMC proteins and chromosome partitioning, condensation and supercoiling
23. Measuring genome evolution
24. The Caulobacter crescentus smc gene is required for cell cycle progression and chromosome segregation
25. Selfish operons: Horizontal transfer may drive the evolution of gene clusters
26. Crystal structure of the SMC head domain: An ABC ATPase with 900 residues antiparallel coiled-coil inserted
27. Prediction and analysis of coiled-coil structures
28. Applications of network BLAST server
29. The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: Long, antiparallel coiled coils, folded at a flexible hinge
30. A Bacillus subtilis gene encoding a protein homologous to eukaryotic SMC motor proteins is necessary for chromosome partition
31. E. coli MukB protein involved in chromosome partition forms a homodimer with a rod-and-hinge structure having DNA binding and ATP/GTP binding activities
32. The new gene mukB codes for a 177 kD protein with coiled-coil domains involved in chromosome partitioning of E. coli
33. Rapid and sensitive sequence comparison with FASTP and FASTA
34. A 71-kDa protein from Halobacterium salinarum belongs to a ubiquitous P-loop ATPase superfamily with head-rod-tail structure
35. Genes involved in the determination of the rate of inversions at short inverted repeats
36. Structural maintenance of chromosomes (SMC) proteins
37. Characterization of a novel human SMC heterodimer homologous to the Schizosaccharomyces pombe Rad18/Spr18 complex
38. The COG database: New developments in phylogenetic classification of proteins from complete genomes
39. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
40. Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli