Bidirectional migration of seqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli

Genes to Cells

Volumn 5, Issue 5, 2000, Pages 327-341

  Hiraga, Sota ^a   Ichinose, Chiyome ^a   Onogi, Toshinari ^a   Niki, Hironori ^a   Yamazoe, Mitsuyoshi ^a  

^a KUMAMOTO UNIV SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BASE PAIRING; CELL DIVISION; CELL MIGRATION; CENTROMERE; CHROMOSOME REPLICATION; CLUSTER ANALYSIS; DNA REPLICATION; DNA SEQUENCE; ESCHERICHIA COLI; IMMUNOFLUORESCENCE; METHYLATION; PRIORITY JOURNAL; PROTEIN MODIFICATION; TEMPERATURE SENSITIVE MUTANT;

BACTERIAL OUTER MEMBRANE PROTEINS; BACTERIAL PROTEINS; BIOLOGICAL TRANSPORT; DNA METHYLATION; DNA REPLICATION; DNA, BACTERIAL; DNA-BINDING PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; ORIGIN RECOGNITION COMPLEX; TRANSCRIPTION FACTORS; VIRAL PROTEINS;

ESCHERICHIA COLI;

EID: 0034086581     PISSN: 13569597     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2443.2000.00334.x     Document Type: Article

References (61)

1. d'Alencon, E., Taghbalout, A., Kern, R. & Kohiyama, M. (1999) Replication cycle dependent association of SeqA to the outer membrane fraction of E. coli. Biochimie 81, 841-846.
2. Austin, S. & Nordström, K. (1990) Partition-mediated incompatibility of bacterial plasmids. Cell 60, 351-354.
3. Bahloul, A., Meury, J., Kern, R., et al. (1996) Co-ordination between membrane oriC sequestration factors and a chromosome partitioning protein, TolC (MukA). Mol. Microbiol. 22, 275-282.
4. Bakker, A. & Smith, D.W. (1989) Methylation of GATC sites is required for precise timing between rounds of DNA replication in Escherichia coli. J. Bacteriol. 171, 5738-5742.
5. Ban, C. & Yang, W. (1998) Structural basis for MutH activation in E. coli mismatch repair and relationship of MutH to restriction endonucleases. EMBO J. 17, 1526-1534.
6. Boye, E., Stokke, T., Kleckner, N. & Skarstad, K. (1996) Coordinating DNA replication initiation with cell growth: differential roles for DnaA and SeqA proteins. Proc. Natl. Acad. Sci. USA 93, 12206-12211.
7. Brendler, T. & Austin, S. (1999) Binding of SeqA protein to DNA requires interaction between two or more complexes bound to separate hemimethylated GATC sequences. EMBO J. 18, 2304-2310.
8. Brendler, T., Abeles, A. & Austin, S. (1995) A protein that binds to the P1 origin core and the oriC 13mer region in a methylation-specific fashion is the product of the host seqA gene. EMBO J. 14, 4083-4089.
9. Campbell, J.L. & Kleckner, N. (1990) E. coli oriC and the dnaA gene promoter are sequestered from dam methyltransferase following the passage of the chromosomal replication fork. Cell 62, 967-979.
10. Carl, P.L. (1970) Escherichia coli mutants with temperature-sensitive synthesis of DNA. Mol. Gen. Genet. 109, 107-122.
11. Crooke, E. (1995) Regulation of chromosomal replication in E. coli: sequestration and beyond. Cell 82, 877-880.
12. von Freiesleben, U., Rasmussen, K.V. & Schaechter, M. (1994) SeqA limits DnaA activity in replication from oriC in Escherichia coli. Mol. Microbiol. 14, 763-772.
13. Garwood, J. & Kohiyama, M. (1996) A novel cytoplasmic hemimethylated oriC binding activity. J. Biol. Chem. 271, 7404-7411.
14. Glaser, P., Sharpe, M.E., Raether, B., et al. (1997) Dynamic, mitotic-like behavior of a bacterial protein required for accurate chromosome partitioning. Genes Dev. 11, 1160-1168.
15. Gordon, G.S., Sitnikov, D., Webb, C.D., et al. (1997) Chromosome and low copy plasmid segregation in E. coli: visual evidence for distinct mechanisms. Cell 90, 1113-1121.
16. Hansen, E.B., Atlung, T., Hansen, F.G., et al. (1984) Fine structure genetic map and complementation analysis of mutations in the dnaA gene of Escherichia coli. Mol. Gen. Genet. 196, 387-396.
17. Heithoff, D.M., Sinsheimer, R.L., Low, D.A. & Mahan, M.J. (1999) An essential role for DNA adenine methylation in bacterial virulence. Science 284, 967-970.
18. Helmstetter, C.E., Cooper, S., Pierucci, O. & Revelas, L. (1968) The bacterial life sequence. Cold Spring Harbor Symp. Quant. Biol. 33, 809-822.
19. Henaut, A., Rouxel, T., Gleizes, A., et al. (1996) Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages. J. Mol. Biol. 257, 574-585.
20. Hill, TM. (1996) Features of the chromosomal terminus region. In: Escherichia Coli and Salmonella: Cellular and Molecular Biology (eds F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, et al.), pp. 1602-1614. Washington DC: ASM Press.
21. Hiraga, S. (1992) Chromosome and plasmid partition in Escherichia coli. Annu. Rev. Biochem. 61, 283-306.
22. Hiraga, S., Niki, H., Ogura, T., et al. (1989) Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells. J. Bacteriol. 171, 1496-1505.
23. Hiraga, S., Ichinose, C., Niki, H. & Yamazoe, M. (1998) Cell cycle-dependent duplication and bidirectional migration of SeqA-associated DNA-protein complexes in E. coli. Mol. Cell 1, 381-387.
24. Hirano, T (1999) SMC-mediated chromosome mechanics: a conserved scheme from bacteria to vertebrates? Genes Dev. 13, 11-19.
25. Kang, S., Lee, H., Han, J.S. & Hwang, D.S. (1999) Interaction of SeqA and Dam methylase on the hemimethylated origin of Escherichia coli chromosomal DNA replication. J. Biol. Chem. 274, 11463-11468.
26. Landoulsi, A., Malki, A., Kern, R., et al. (1990) The E. coli cell surface specifically prevents the initiation of DNA replication at oriC on hemimethylated DNA templates. Cell 63, 1053-1060.
27. Lemon, K.P. & Grossman, A.D. (1998) Localization of bacterial DNA polymerase: evidence for a factory model of replication. Science 282, 1516-1519.
28. Lin, D.C. & Grossman, A.D. (1998) Identification and characterization of a bacterial chromosome partitioning site. Cell 92, 675-685.
29. Lin, D.C.-H., Levin, P.A. & Grossman, A.D. (1997) Bipolar localization of a chromosome partition protein in Bacillus subtilis. Proc. Natl. Acad. Sci. USA 94, 4721-4726.
30. Lu, M., Campbell, J.L., Boye, E. & Kleckner, N. (1994) SeqA: a negative modulator of replication initiation in E. coli. Cell 77, 413-426.
31. Marians, K.J. (1996) Replication fork propagation. In: Escherichia Coli and Salmonella: Cellular and Molecular Biology (eds F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, et al.), pp. 749-763. Washington DC: ASM Press.
32. Marston, A.L. & Errington, J. (1999) Dynamic movement of the ParA-like Soj protein of B. subtilis and its dual role in nucleoid organization and developmental regulation. Mol. Cell 4, 673-682.
33. Melby T., Ciampaglio, C., Briscoe, G. & Erickson, H. (1998) The symmetrical structure of structure maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge. J. Cell Biol. 142, 1595-1604.
34. Messer, W & Weigel, C. (1996) Initiation of chromosome replication. In: Escherichia Coli and Salmonella: Cellular and Molecular Biology (eds F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, et al.), pp. 1579-1601. Washington DC: ASM Press.
35. Meury J., Bahloul, A. & Kohiyama, M. (1995) Importance of the replication origin sequestration in cell division of Escherichia coli. Biochimie 77, 875-879.
36. Mohl, D.A. & Gober, J.W. (1997) Cell cycle-dependent polar localization of chromosome partitioning proteins in Caulobacter crescentus. Cell 88, 675-684.
37. Niki, H. & Hiraga, S. (1997) Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coli. Cell 90, 951-957.
38. Niki, H. & Hiraga, S. (1998) Polar localization of the replication origin and terminus in Escherichia coli nucleoids during chromosome partitioning. Genes Dev. 12, 1036-1045.
39. Niki, H. & Hiraga, S. (1999) Subcellular localization of plasmids containing the oriC region of the Escherichia coli chromosome, with or without the sopABC partitioning system. Mol. Microbiol. 34, 498-503.
40. Niki, H., Jaffé, A., Imamura, R., et al. (1991) The new gene mukB codes for a 177kd protein with coiled-coil domains involved in chromosome partitioning of E. coli. EMBO J. 10, 183-193.
41. Niki, H., Imamura, R., Kitaoka, M., et al. (1992) E. coli MukB protein involved in chromosome partition forms a homodimer with a rod-and-hinge structure having DNA binding and ATP/GTP binding activities. EMBO J. 11, 5101-5109.
42. Niki, H., Yamaichi, Y. & Hiraga, S. (2000) Dynamic organization of chromosomal DNA in Escherichia coli. Genes Dev. 14, 212-223.
43. Ogden, G.B., Pratt, M.J. & Schaechter, M. (1988) The replicative origin of the E. coli chromosome binds to cell membranes only when hemimethylated. Cell 54, 127-135.
44. Ogura, T. & Hiraga, S. (1983) Partition mechanism of F plasmid: two plasmid gene-encoded products and a cis-acting region are involved in partition. Cell 32, 351-360.
45. Onogi, T., Niki, H., Yamazoe, M. & Hiraga, S. (1999) The assembly and migration of SeqA-Gfp fusion in living cells of Escherichia coli. Mol. Microbiol. 31, 1775-1782.
46. Portillo, F.G.-D., Pucciareffi, M.G. & Casadesus, J. (1999) DNA adenine methylase mutants of Salmonella typhimurium show defects in protein secretion, cell invasion, and M cell cytotoxicity. Proc. Natl. Acad. Sci. USA 96, 11578-11583.
47. Quisel, J.D., Lin, D.C. & Grossman, A.D. (1999) Control of development by altered localization of a transcription factor in B. subtilis. Mol. Cell 4, 665-672.
48. Shakibai, N., Ishidate, K., Reshetnyak, E., et al. (1998) High-affinity binding of hemimethylated oriC by Escherichia coli membranes is mediated by a multiprotein system that includes SeqA and a newly identified factor, SeqB. Proc. Natl. Acad. Sci. USA 95, 11117-11121.
49. Sharpe, M.E. & Errington, J. (1996) The Bacillus subtilis soj-spo0J locus is required for a centromere-like function involved in prespore chromosome partitioning. Mol. Microbiol. 21, 501-509.
50. Sharpe, M.E. & Errington, J. (1998) A fixed distance for separation of newly replicated copies of oriC in Bacillus subtilis: implications for co-ordination of chromosome segregation and cell division. Mol. Microbiol. 28, 981-990.
51. Slater, S., Wold, S., Lu, M., et al. (1995) E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration. Cell 82, 927-936.
52. Smith, J. & Modrich, P. (1996) Mutation detection with MutH, MutL, and MutS mismatch repair proteins. Proc. Natl. Acad. Sci. USA 93, 4374-4379.
53. Stancheva, I., Koller, T. & Sogo, J.M. (1999) Asymmetry of Dam remethylation on the leading and lagging arms of plasmid replicative intermediates. EMBO J. 18, 6542-6551.
54. Torheim, N.K. & Skarstad, K. (1999) Escherichia coli SeqA protein affects DNA topology and inhibits open complex formation at oriC. EMBO J. 18, 4882-4888.
55. Webb, C.D, Teleman, A., Gordon, S., et al. (1997) Bipolar localization of the replication origin regions of chromosomes in vegetative and sporulating cells of B. subtilis. Cell 88, 667-674.
56. Wold, S., Boye, E., Slater, S., et al. (1998) Effects of purified SeqA protein on oriC-dependent DNA replication in vitro. EMBO J. 17, 4158-4165.
57. Wu, L.J. & Errington, J. (1994) Bacillus subtilis SpoIIIE protein required for DNA segregation during asymmetric cell division. Science 264, 572-575.
58. Wu, L.J. & Errington, J. (1997) Septal localization of the SpoIIIE chromosome partitioning protein in Bacillus subtilis. EMBO J. 16, 2161-2169.
59. Wu, L.J., Lewis, P.J., Allmansberger, R., et al. (1995) A conjugation-like mechanism for prespore chromosome partitioning during sporulation in Bacillus subtilis. Genes Dev. 9, 1316-1326.
60. Yamanaka, K., Ogura, T., Niki, H. & Hiraga, S. (1996) Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli. Mol. Gen. Genet. 250, 241-251.
61. Yamazoe, M., Onogi, T., Sunako, Y., et al. (1999) Complex formation of MukB, MukE, and MukF proteins involved in chromosome partitioning in E. coli. EMBO J. 18, 5873-5884.