A protein related to eucaryal and bacterial dna-motor proteins in the hyperthermophilic archaeon sulfolobus acidocaldarius

Journal of Molecular Evolution

Volumn 45, Issue 1, 1997, Pages 107-114

  Elie, Christiane ^a   Baucher, Marie France ^a   Fondrat, Christian ^b   Forterre, Patrick ^a  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b CITI2   (France)

Author keywords

Coiled coil structures; DNA motor proteins; Domain shuffling; Hyperthermophilic archaea; Purine NTPase; SMC like proteins; Sulfolobus acidocaldarius; UvrA related proteins

Indexed keywords

BACTERIAL DNA;

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; DNA RECOMBINATION; DNA REPAIR; EVOLUTION; NONHUMAN; PROTEIN DNA INTERACTION; PROTEIN DOMAIN; PROTEIN ISOLATION; PROTEIN PROCESSING; THERMOPHILIC BACTERIUM;

ACID ANHYDRIDE HYDROLASES; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CLONING, MOLECULAR; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; NUCLEOSIDE-TRIPHOSPHATASE; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY; SULFOLOBUS;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; SULFOLOBUS ACIDOCALDARIUS;

EID: 0030797561     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006193     Document Type: Article

References (35)

1. Alani E, Subbiah S, Kleckner N (1989) The yeast RAD50 gene encodes a predicted 153-kD protein containing a purine nucleotide-binding domain and two large heptad-repeat regions. Genetics 122:47-57
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-110
3. Bairoch A (1993) The PROSITE dictionary of sites and patterns in proteins, its current status. Nucleic Acids Res 21:3097-3103
4. Chuang P-T, Albertson DG, Meyer BJ (1994) DPY-27: a chromosome condensation protein homolog that regulates C. elegans dosage compensation through association with the X chromosome. Cell 79:459-474
5. Confalonieri F, Elie C, Nadal M, Bouthier de La Tour C, Forterre P, Duguet M (1993) Reverse gyrase: a helicase-like domain and a type I topoisomerase in the same polypeptide. Proc Natl Acad Sci USA 90:4753-4757
6. Dessen P, Fondrat C, Valencien C, Mugnier C (1990) BISANCE: a French service for access to biomolecular sequence databases. Comput Appl Biosci 6:355-356
7. Doolittle RF, Johnson MS, Husain I, Van Houten B, Thomas DC, Sancar A (1986) Domainal evolution of a prokaryotic DNA repair protein and its relationship to active-transport proteins. Nature 323: 451-453
8. Elie C, De Recondo AM, Forterre P (1989) Thermostable DNA polymerase from the archaebacterium Sulfolobus acidocaldarius: purification, characterization and immunological properties. Eur J Biochem 178:619-626
9. Forterre P, Elie C (1993) Chromosome structure, DNA topoisomerases, and DNA polymerases in Archaea. In: Kates M, Kushner DJ, Matheson AT (eds) The biochemistry of Archaea. New comprehensive biochemistry, Elsevier, Amsterdam, vol. 26. p 325
10. Gasser SM (1995) Coiling up chromosomes. Curr Biol 5:357-360
11. Gorbalenya AE, Koonin EV (1990) Superfamily of Uvra-related NTP-binding proteins. Implications for rational classification of recombination/repair systems. J Mol Biol 213:583-591
12. Grayling RA, Sandman K, Reeve JN (1994) Archaeal DNA binding proteins and chromosome structure. In: Pfeifer F, Palm P, Scleifer K-H (eds) Molecular biology of Archaea. Gustav Fisher, Verlag, p82
13. Higgins CF, Hiles ID, Salmond GPC, Gill DR, Downie JA, Evans IJ, Holland IB, Gray L, Buckel SD, Bell AW, Hermodson MA (1986) A family of related ATP-binding subunits coupled to many distinct biological processes in bacteria. Nature 323:448-450
14. Higgins CF, Gallagher MP, Mimmack ML, Pearce SR (1988) A family of closely related ATP-binding subunits from prokaryotic and eukaryotic cells. Bioessays 8:111-116
15. Hirano T (1995) Biochemical and genetic dissection of mitotic chromosome condensation. Trends Biochem Sci 20:357-361
16. Hirano T, Mitchison TJ (1994) A heterodimeric coiled-coil protein required for mitotic chromosome condensation in vitro. Cell 79: 449-458
17. Hirano T, Mitchison TJ, Swedlow JR (1995) The SMC family: from chromosome condensation to dosage compensation. Curr Opin Cell Biol 7:329-336
18. Huynh TV, Young RA, Davis RW (1985) Constructing and screening cDNA libraries in λgt10 and λgt11. In: Rickwood D, Hames BD (eds) DNA cloning, vol 1, a practical approach. Glover DM, IRL Press, Oxford, Washington DC, p49
19. Lehmann AR, Walicka M, Griffiths DJF, Murray JM, Watts FZ, McCready S, Carr AM (1995) The rad18 gene of Schizosaccharomyces pombe defines a new subgroup of the SMC superfamily involved in DNA repair. Mol Cell Biol 15:7067-7080
20. Lupas A, Van Dyke M, Stock J (1991) Predicting coiled coils from protein sequences. Science 252:1162-1164
21. Notarnicola SM, McIntosh MA, Wise KS (1991) A Mycoplasma hyorhinis protein with sequence similarities to nucleotide-binding enzymes. Gene 97:77-85
22. Pause A, Sonenberg N (1992) Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A. EMBO J 11:2643-2654
23. Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448
24. Peterson CL (1994) The SMC family: novel motor proteins for chromosome condensation? Cell 79:389-392
25. Saitoh N, Goldberg IG, Wood ER, Earnshaw WC (1994) ScII: an abundant chromosome scaffold protein is a member of a family of putative ATPases with an unusual predicted tertiary structure. J Cell Biol 127:303-318
26. Saitoh N, Goldberg I, Earnshaw WC (1995) The SMC proteins and the coming of age of the chromosome scaffold hypothesis. Bioessays 17:759-766
27. Saka Y, Sutani T, Yamashita Y, Saitoh S, Takeuchi M, Nakaseko Y, Yanagida M (1994) Fission yeast cut3 and cut14, members of a ubiquitous protein family, are required for chromosome condensation and segregation in mitosis. EMBO J 13:4938-4952
28. Sanger F, Nicklen, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
29. Sharples GJ, Leach DRF (1995) Structural and functional similarities between the SbcCD proteins of Escherichia coli and the Rad50 and MRE11 (RAD32) recombination and repair proteins of yeast. Mol Microbiol 17:1215-1220
30. Starich MR, Sandman K, Reeve JN, Summers MF (1996) NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histone. J Mol Biol 255:187-203
31. Strunnikov AV, Larionov VL, Koshland D (1993) SMC1: an essential yeast gene encoding a putative head-rod-tail protein is required for nuclear division and defines a new ubiquitous protein family. J Cell Biol 123:1635-1648
32. Strunnikov AV, Hogan E, Koschland D (1995) SMC2, a Saccharomyces cerevisiae gene essential for chromosome segregation and condensation, defines a subgroup within the SMC family. Genes Dev 9:587-599
33. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
34. Walker RA, Sheetz MP (1993) Cytoplasmic microtubule-associated motors. Annu Rev Biochem 62:429-451
35. Walker JE, Saraste M, Runswick MJ, Gay NJ (1982) Distantly related sequences in the α- and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1:945-951