ATP-dependent aggregation of single-stranded DNA by a bacterial SMC homodimer

EMBO Journal

Volumn 17, Issue 23, 1998, Pages 7139-7148

  Hirano, Michiko ^a   Hirano, Tatsuya ^a  

^a Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

Author keywords

ATPase; Bacillus subtilis; Chromosome organization; SMC proteins; ssDNA

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; SINGLE STRANDED DNA;

ARTICLE; BACILLUS SUBTILIS; CHROMOSOME CONDENSATION; CONTROLLED STUDY; ENZYME ACTIVITY; GENE SEGREGATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN DNA BINDING;

ARCHAEA; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); EUKARYOTA; POSIBACTERIA; UNIDENTIFIED BACTERIOPHAGE;

EID: 0032403026     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/17.23.7139     Document Type: Article

References (42)

1. Blattner, F.R. et al. (1997) The complete genome sequence of Escherichia coli K-12. Science. 277, 1453-1474.
2. Bode, J., Kohwi, Y., Dickinson, L., Joh, T., Klehr, D., Mielke, C. and Kohwi-Shigematsu, T. (1992) Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science, 255, 195-197.
3. Britton, R.A., Lin, D.C.-H. and Grossman, A.D. (1998) Characterization of a prokaryotic SMC protein involved in chromosome partitioning. Genes Dev., 12, 1254-1259.
4. Bult, C.J. et al. (1996) Complete genome sequence of the methanogenic archeon, Methanococcus jannaschii. Science, 273, 1058-1073.
5. Chuang, P.-T., Albertson, D.G. and Meyer, B.J. (1994) DPY-27: a chromosome condensation protein homolog that regulates C.elegans dosage compensation through association with the X chromosome. Cell. 79, 459-474.
6. Cole, S.T. et al. (1998) Deciphering the biology of Mycobacierium tuberculosis from the complete genome sequence. Nature, 393, 537-544.
7. Falk, G. and Walker, J. (1988) DNA sequence of a gene cluster coding for subunits of the F-0 membrane ATP synthase in Rhodospirillum rubrum: support for modular evolution of the F-1 and F-0 sectors. Biochem. J., 254, 109-122.
8. Fleischmann, R.D. et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influence Rd. Science, 269, 496-512.
9. Fraser, C.M. et al. (1995) The minimal gene complement of Mycoplasma genitalium. Science, 270, 397-403.
10. Guacci, V., Koshland, D. and Strunnikov, A. (1997) A direct link between sister chromatid cohesion and chromosome condensation revealed through the analysis of MCD1 in S.cerevisiae. Cell, 91, 47-57.
11. Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.-C. and Herrmann, R. (1996) Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res., 24, 4420-4449.
12. Hirano, T. (1998) SMC protein complexes and higher-order chromosome dynamics. Curr. Opin. Cell Biol., 10, 317-322.
13. Hirano, T. and Mitchison, T.J. (1994) A heterodimeric coiled-coil protein required for mitotic chromosome condensation in vitro. Cell, 79, 449-458.
14. Hirano, T., Kobayashi, R. and Hirano, M. (1997) Condensins, chromosome condensation protein complexes containing XCAP-C, XCAP-E and a Xenopus homolog of the Drosophila Barren protein. Cell, 89, 511-521.
15. Jessberger, R., Riwar, B., Baechtold, H. and Akhmedov, A.T. (1996) SMC proteins constitute two subunits of the mammalian recombination complex RC-1. EMBO J., 15, 4061-4068.
16. Jessberger, R., Frei, C. and Gasser, S.M. (1998) Chromosome dynamics: the SMC protein family. Curr. Opin. Genet. Dev., 8, 254-259.
17. Kaneko, T. et al. (1996) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res., 3, 109-136.
18. Kimura, K. and Hirano, T. (1997) ATP-dependent positive supercoiling of DNA by 13S condensin: a biochemical implication for chromosome condensation. Cell, 90, 625-634.
19. Klenk, H.P. et al. (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature, 390, 364-370.
20. Koshland, D. and Strunnikov, A. (1996) Mitotic chromosome condensation. Annu. Rev. Cell. Dev. Biol., 12, 305-333.
21. Kowalczykowski, S.C. and Eggleston, A.K. (1994) Homologous pairing and DNA strand-exchange proteins. Annu. Rev. Biochem., 63, 991-1043.
22. Kunst, F. et al. (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature, 390, 249-256.
23. Lieb, J.D., Albrecht, M.R., Chuang, P.-T. and Meyer, B.J. (1998) MIX-1: an essential component of the C.elegans mitotic machinery executes X-chromosome dosage compensation. Cell, 92, 265-277.
24. Lin, D.C.-H. and Grossman, A.D. (1998) Identification and characterization of a bacterial chromosome partitioning site. Cell, 92, 675-685.
25. Losada, A., Hirano, M. and Hirano, T. (1998) Identification of Xenopus SMC protein complexes required for sister chromatid cohesion. Genes Dev., 12, 1986-1997.
26. Lupas, A., VanDyke, M. and Stock, J. (1991) Predicting coiled coils from protein sequences. Science, 252, 1162-1164.
27. Matson, S.W. and Kaiser-Rogers, K.A. (1990) DNA helicases. Annu. Rev. Biochem., 59, 289-329.
28. Michaelis, C., Ciosk, R. and Nasmyth, K. (1997) Cohesins: chromosomal proteins that prevent premature separation of sister chromatids. Cell, 91, 35-45.
29. Moriya, S., Tsujikawa, E., Hassan, A.K., Asai, K., Kodama, T. and Ogasawara, N. (1998) A Bacillus subtilis gene-encoding protein homologous to eukaryotic SMC motor protein is necessary for chromosome partition and condensation. Mol. Microbiol., 29, 179-187.
30. Munakata, N., Morohoshi, F., Saitou, M., Yamazaki, N. and Hayashi, K. (1994) Molecular characterization of thirteen gyrA mutations conferring nalidixic acid resistance in Bacillus subtilis. Mol. Gen. Genet., 244, 97-103.
31. Notarnicola, S., McIntosh, M. and Wise, K. (1991) A Mycoplasma hvorhinis protein with sequence similarities to nucleotide-binding enzymes. Gene, 97, 77-85.
32. Oguro, A., Kakeshita, H., Honda, K., Takamatsu, H., Nakamura, K. and Yamane, K. (1995) srb: a Bacillus subtilis gene encoding a homologue of the alpha-subunit of the mammalian signal recognition particle receptor. DNA Res., 2. 95-100.
33. Pettijohn, D.E. (1982) Structure and properties of the bacterial nucleoid. Cell, 30, 667-669.
34. 1-ATPase. J. Biol. Chem., 263, 15957-15963.
35. Saitoh, N., Goldberg, I., Wood, E.R. and Earnshaw, W.C. (1994) ScII: an abundant chromosome scaffold protein is a member of a family of putative ATPases with an unusual predicted tertiary structure. J. Cell Biol. 127, 303-318.
36. Saka, Y., Sutani, T., Yamashita, Y., Saitoh, S., Takeuchi, M., Nakaseko, Y. and Yanagida, M. (1994) Fission yeast cut3 and cut14, members of a ubiquitous protein family, are required for chromosome condensation and segregation in mitosis. EMBO J., 13, 4938-4952.
37. Siegel, L.M. and Monty, K.J. (1966) Determination of molecular weights and friction ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation: application to crude preparations of sulfite and hydroxylamine reductases. Biochim. Biophys. Acta, 112, 346-362.
38. Strunnikov, A.V., Larionov, V.L. and Koshland, D. (1993) SMC1: an essential yeast gene encoding a putative head-rod-tail protein is required for nuclear division and defines a new ubiquitous family. J. Cell Biol., 123, 1635-1648.
39. Strunnikov, A.V. Hogan, E. and Koshland, D. (1995) SMC2, a Saccharomyces cerevisiae gene essential for chromosome segregation and condensation, defines a subgroup within the SMC family. Genes Dev., 9, 587-599.
40. Sutani, T. and Yanagida, M. (1997) DNA renaturation activity of the SMC complex implicated in chromosome condensation. Nature, 388, 798-801.
41. Tsang, S.S., Chow, S.A. and Radding, C.M. (1985) Networks of DNA and recA protein are intermediates in homologous pairing. Biochemistry, 24, 3226-3232.
42. Weinstock, G.M., McEntee, K. and Lehman, I.R. (1979) ATP-dependent renaturation of DNA catalyzed by the recA protein of Escherichia coli. Proc. Natl Acad. Sci. USA, 76, 126-130.