Prospects for ab initio protein structural genomics

Journal of Molecular Biology

Volumn 306, Issue 5, 2001, Pages 1191-1199

  Simons, Kim T ^a   Strauss, Charlie ^a   Baker, David ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Ab initio structure prediction; Protein folding; Proteomics

Indexed keywords

AMINO TERMINAL SEQUENCE; ARTICLE; COMPARATIVE STUDY; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

EID: 0035830958     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.4459     Document Type: Article

References (21)

1. FORESST: Fold recognition from secondary structure predictions of proteins
2. Prediction of protein tertiary structure to low resolture performance for a large and structurally diverse test set
3. Protein fold recognition using sequence-derived predictions
4. Sampling protein conformations using segment libraries and a genetic algorithm
5. Selection of representative protein data sets
6. DALI: A network tool for protein structure comparison
7. Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure
8. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
9. DSC: Public domain protein secondary structure prediction
10. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
11. Raster3D: Photo-realistic molecular graphics
12. Equation of state calculations by fast computing machine
13. Critical assessment of methods of protein structure prediction (CASP): Round III
14. Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction
15. PHD-an automatic mail server for protein secondary structure prediction
16. Clustering of low-energy conformations near the native structures of small proteins
17. From genes to protein structure and function: Novel applications of computational approaches in the genomic era
18. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
19. ab initio protein structure prediction of CASP III targets using ROSETTA
20. Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
21. Deviation of 3D coordinate templates for searching structural databases: Application of Ser-His-Asp catalytic triads in the serine proteinases and lipases