-
1
-
-
0025878149
-
Amino acid substitution matrices from an information theoretic perspective
-
Altschul SF. 1991 Amino acid substitution matrices from an information theoretic perspective. J Mol Biol 219:555-565.
-
(1991)
J Mol Biol
, vol.219
, pp. 555-565
-
-
Altschul, S.F.1
-
2
-
-
0025183708
-
Basic local alignment tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment tool. J Mol Biol 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0026562263
-
The SWISSPROT protein sequence data bank
-
Bairoch A, Boeckmann B. 1992. The SWISSPROT protein sequence data bank. Nucleic Acids Res 20:2019-2022.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2019-2022
-
-
Bairoch, A.1
Boeckmann, B.2
-
4
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. 1977. The Protein Data Bank: A computer-based archival file for macromolecular structures. J Mol Biol 112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
6
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie JU, Luthy R, Eisenberg D. 1991. A method to identify protein sequences that fold into a known three-dimensional structure. Science 253:164-170.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Luthy, R.2
Eisenberg, D.3
-
7
-
-
0027318317
-
An empirical energy function for threading protein sequence through folding motif
-
Bryant SH, Lawrence CE. 1993. An empirical energy function for threading protein sequence through folding motif. Proteins Struct Funct Genet 16:92-112.
-
(1993)
Proteins Struct Funct Genet
, vol.16
, pp. 92-112
-
-
Bryant, S.H.1
Lawrence, C.E.2
-
8
-
-
0000228203
-
A model of evolutionary change in proteins
-
Dayhoff MO, ed. Washington, DC: National Biomedical Research Foundation
-
Dayhoff MD, Schwartz RM, Orcutt BC. 1978. A model of evolutionary change in proteins. In: Dayhoff MO, ed. Atlas of protein sequence and structure, vol 5, suppl 3. Washington, DC: National Biomedical Research Foundation, pp 345.
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, Issue.3 SUPPL.
, pp. 345
-
-
Dayhoff, M.D.1
Schwartz, R.M.2
Orcutt, B.C.3
-
9
-
-
0030310317
-
Assessing the performance of inverted protein folding methods by means of an extensive benchmark
-
Fischer D, Elofsson A, Rice DW, Eisenberg D. 1996a. Assessing the performance of inverted protein folding methods by means of an extensive benchmark. Proc 1st Pacific Symposium on Biocomputing. pp 300-318. http://www.pharm.ucsf.edu/psb/psb96/proceedings/eproceedings.html.
-
(1996)
Proc 1st Pacific Symposium on Biocomputing
, pp. 300-318
-
-
Fischer, D.1
Elofsson, A.2
Rice, D.W.3
Eisenberg, D.4
-
11
-
-
0029564871
-
A 3-D sequence-independent representation of the Protein Data Bank
-
Fischer D, Tsai CJ, Nussinov R, Wolfson H. 1995. A 3-D sequence-independent representation of the Protein Data Bank. Protein Eng 8:981-997.
-
(1995)
Protein Eng
, vol.8
, pp. 981-997
-
-
Fischer, D.1
Tsai, C.J.2
Nussinov, R.3
Wolfson, H.4
-
12
-
-
0026726481
-
Topology fingerprint approach to the inverse folding problem
-
Godzik A, Kolinski A, Skolnick J. 1992. Topology fingerprint approach to the inverse folding problem. J Mol Biol 227:227-238.
-
(1992)
J Mol Biol
, vol.227
, pp. 227-238
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
13
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
Gonnet GH, Cohen MA, Benner SA. 1992. Exhaustive matching of the entire protein sequence database. Science 256:1433-1445.
-
(1992)
Science
, vol.256
, pp. 1433-1445
-
-
Gonnet, G.H.1
Cohen, M.A.2
Benner, S.A.3
-
14
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S, Henikoff JG. 1992. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 89:10915-10919.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
16
-
-
0026690571
-
A new approach to protein fold recognition
-
Jones DT, Taylor WR, Thornton JM. 1992. A new approach to protein fold recognition. Nature 358:86-89.
-
(1992)
Nature
, vol.358
, pp. 86-89
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
17
-
-
0028318094
-
Factors influencing the ability of knowledge-based potential to identify native sequence-structure matches
-
Kocher JPA, Rooman MJ, Wodak SJ. 1994. Factors influencing the ability of knowledge-based potential to identify native sequence-structure matches. J Mol Biol 235:1598-1613.
-
(1994)
J Mol Biol
, vol.235
, pp. 1598-1613
-
-
Kocher, J.P.A.1
Rooman, M.J.2
Wodak, S.J.3
-
18
-
-
0028818340
-
Protein structure prediction by threading methods: Evaluation of current techniques
-
Lemer CMR, Rooman MJ, Wodak SJ. 1995. Protein structure prediction by threading methods: Evaluation of current techniques. Proteins Struct Funct Genet 23:337-355.
-
(1995)
Proteins Struct Funct Genet
, vol.23
, pp. 337-355
-
-
Lemer, C.M.R.1
Rooman, M.J.2
Wodak, S.J.3
-
19
-
-
0028579433
-
Protein structural similarities predicted by a sequence-structure compatibility method
-
Matsuo Y, Nishikawa K. 1994. Protein structural similarities predicted by a sequence-structure compatibility method. Protein Sci 3:2055-2063.
-
(1994)
Protein Sci
, vol.3
, pp. 2055-2063
-
-
Matsuo, Y.1
Nishikawa, K.2
-
20
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman SB, Wunsch CD. 1970. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48:443-453.
-
(1970)
J Mol Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
21
-
-
0027302043
-
Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from 3D structures
-
Ouzounis C, Sander C, Scharf M, Schneider R. 1993. Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from 3D structures. J Mol Biol 232:805-825.
-
(1993)
J Mol Biol
, vol.232
, pp. 805-825
-
-
Ouzounis, C.1
Sander, C.2
Scharf, M.3
Schneider, R.4
-
22
-
-
0028607139
-
Crystal structure of AmiC: The controller of transcription antitermination in the amidase operon of Pseudomonas aeruginosa
-
Pearl LH, O'Hara B, Drew RE, Wilson SA. 1994. Crystal structure of AmiC: The controller of transcription antitermination in the amidase operon of Pseudomonas aeruginosa. EMBO J 13:5810-5817.
-
(1994)
EMBO J
, vol.13
, pp. 5810-5817
-
-
Pearl, L.H.1
O'Hara, B.2
Drew, R.E.3
Wilson, S.A.4
-
23
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson WR, Lipman DJ. 1988. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
25
-
-
0029186289
-
Topits: Threading one-dimensional predictions into three-dimensional structures
-
Rost B. 1995. Topits: Threading one-dimensional predictions into three-dimensional structures. Proc Conf Intelligent Systems in Molecular Biology, ISMB-95. pp 314-321.
-
(1995)
Proc Conf Intelligent Systems in Molecular Biology, ISMB-95
, pp. 314-321
-
-
Rost, B.1
-
26
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost B, Sander C. 1993. Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol 232:584-599.
-
(1993)
J Mol Biol
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
28
-
-
0029000696
-
Knowledge-based potentials for proteins
-
Sippl MJ. 1995. Knowledge-based potentials for proteins. Curr Opin Struct Biol 5:229-235.
-
(1995)
Curr Opin Struct Biol
, vol.5
, pp. 229-235
-
-
Sippl, M.J.1
-
29
-
-
0026704815
-
Detection of native like models for amino acid sequences of unknown three dimensional structure in a data base of known protein conformations
-
Sippl MJ, Weitckus S. 1992. Detection of native like models for amino acid sequences of unknown three dimensional structure in a data base of known protein conformations. Proteins Struct Funct Genet 13:258-271.
-
(1992)
Proteins Struct Funct Genet
, vol.13
, pp. 258-271
-
-
Sippl, M.J.1
Weitckus, S.2
-
30
-
-
0019887799
-
Identification of common molecular sub-sequences
-
Smith TF, Waterman MS. 1981. Identification of common molecular sub-sequences. J Mol Biol 147:195-197.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
31
-
-
0027458885
-
Three-dimensional profiles from residuepair preferences: Identification of sequences with β/α-barrel fold
-
Wilmanns M, Eisenberg D. 1993. Three-dimensional profiles from residuepair preferences: Identification of sequences with β/α-barrel fold. Proc Natl Acad Sci USA 90:1379-1383.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 1379-1383
-
-
Wilmanns, M.1
Eisenberg, D.2
-
32
-
-
0028886967
-
Inverted protein folding by the residue pair preference profile method
-
Wilmanns M, Eisenberg D. 1995. Inverted protein folding by the residue pair preference profile method. Protein Eng 8:627-639.
-
(1995)
Protein Eng
, vol.8
, pp. 627-639
-
-
Wilmanns, M.1
Eisenberg, D.2
-
34
-
-
0027994453
-
Recognition of related proteins by iterative template refinement (ITR)
-
Yi TM, Lander ES. 1994. Recognition of related proteins by iterative template refinement (ITR). Protein Sci 3:1315-1328.
-
(1994)
Protein Sci
, vol.3
, pp. 1315-1328
-
-
Yi, T.M.1
Lander, E.S.2
|