-
1
-
-
0028361219
-
The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria
-
T. Rowlands, P. Baumann and S.P. Jackson. The TATA-binding protein: a general transcription factor in eukaryotes and archaebacteria. Science 264 (1994) 1326-9.
-
(1994)
Science
, vol.264
, pp. 1326-1329
-
-
Rowlands, T.1
Baumann, P.2
Jackson, S.P.3
-
2
-
-
0030013203
-
Biochemistry and structural biology of transcription factor IID (TFIID)
-
S.K. Burley and R.G. Roeder. Biochemistry and structural biology of transcription factor IID (TFIID). Annu. Rev. Biochem. 65 (1996) 769-99.
-
(1996)
Annu. Rev. Biochem
, vol.65
, pp. 769-799
-
-
Burley, S.K.1
Roeder, R.G.2
-
3
-
-
0026741634
-
The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells
-
B.P. Cormack and K. Struhl. The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells. Cell 69 (1992) 685-96.
-
(1992)
Cell
, vol.69
, pp. 685-696
-
-
Cormack, B.P.1
Struhl, K.2
-
4
-
-
0028289788
-
TBP-TAF complexes: Selectivity factors for eukaryotic transcription
-
J.A. Goodrich and R. Tjian. TBP-TAF complexes: selectivity factors for eukaryotic transcription. Curr. Opin. Cell. Biol. 6 (1994) 403-9.
-
(1994)
Curr. Opin. Cell. Biol
, vol.6
, pp. 403-409
-
-
Goodrich, J.A.1
Tjian, R.2
-
5
-
-
0028329859
-
Duality of TBP, the universal transcription factor
-
K. Struhl. Duality of TBP, the universal transcription factor. Science 263 (1994) 1103.
-
(1994)
Science
, vol.263
, pp. 1103
-
-
Struhl, K.1
-
6
-
-
0030249381
-
The role of general initiation factors in transcription by RNA polymerase II
-
R.G. Roeder. The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21 (1996) 327-35.
-
(1996)
Trends Biochem. Sci
, vol.21
, pp. 327-335
-
-
Roeder, R.G.1
-
7
-
-
0019363396
-
Organization and expression of eucaryotic split genes coding for proteins
-
R. Breathnach and P. Chambon. Organization and expression of eucaryotic split genes coding for proteins. Annu. Rev. Biochem. 50 (1981) 349-83.
-
(1981)
Annu. Rev. Biochem
, vol.50
, pp. 349-383
-
-
Breathnach, R.1
Chambon, P.2
-
8
-
-
0032540282
-
Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II
-
B.C. Hoopes, J.F. LeBlanc and D.K. Hawley. Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II. J. Mol. Biol. 277 (1998) 1015-31.
-
(1998)
J. Mol. Biol
, vol.277
, pp. 1015-1031
-
-
Hoopes, B.C.1
LeBlanc, J.F.2
Hawley, D.K.3
-
9
-
-
0033542484
-
Enhancement of TBP binding by activators and general transcription factors
-
X.Y. Li, A. Virbasius, X. Zhu and M.R. Green. Enhancement of TBP binding by activators and general transcription factors. Nature 399 (1999) 605-9.
-
(1999)
Nature
, vol.399
, pp. 605-609
-
-
Li, X.Y.1
Virbasius, A.2
Zhu, X.3
Green, M.R.4
-
10
-
-
0033542436
-
Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme
-
L. Kuras and K. Struhl. Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature 399 (1999) 609-13.
-
(1999)
Nature
, vol.399
, pp. 609-613
-
-
Kuras, L.1
Struhl, K.2
-
11
-
-
0032466113
-
The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box
-
T.W. Burke, P.J. Willy, A.K. Kutach, J.E. Butler and J.T. Kadonaga. The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box. Cold Spring Harb. Symp. Quant. Biol. 63 (1998) 75-82.
-
(1998)
Cold Spring Harb. Symp. Quant. Biol
, vol.63
, pp. 75-82
-
-
Burke, T.W.1
Willy, P.J.2
Kutach, A.K.3
Butler, J.E.4
Kadonaga, J.T.5
-
12
-
-
0024977414
-
Five intermediate complexes in transcription initiation by RNA polymerase II
-
S. Buratowski, S. Hahn, L. Guarente and P.A. Sharp. Five Intermediate Complexes in Transcription Initiation by RNA Polymerase II. Cell 56 (1989) 549-561.
-
(1989)
Cell
, vol.56
, pp. 549-561
-
-
Buratowski, S.1
Hahn, S.2
Guarente, L.3
Sharp, P.A.4
-
13
-
-
0028904453
-
The RNA polymerase II holoenzyme and its implications for gene regulation
-
A.J. Koleske and R.A. Young. The RNA polymerase II holoenzyme and its implications for gene regulation. Trends Biochem. Sci. 20 (1995) 113-6.
-
(1995)
Trends Biochem. Sci
, vol.20
, pp. 113-116
-
-
Koleske, A.J.1
Young, R.A.2
-
14
-
-
0032900980
-
Intermediates in formation and activity of the RNA polymerase II preinitiation complex: Holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB
-
J.A. Ranish, N. Yudkovsky and S. Hahn. Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev. 13 (1999) 49-63.
-
(1999)
Genes Dev
, vol.13
, pp. 49-63
-
-
Ranish, J.A.1
Yudkovsky, N.2
Hahn, S.3
-
15
-
-
0029846871
-
The general transcription factors of RNA polymerase II
-
G. Orphanides, T. Lagrange and D. Reinberg. The general transcription factors of RNA polymerase II. Genes Dev. 10 (1996) 2657-83.
-
(1996)
Genes Dev
, vol.10
, pp. 2657-2683
-
-
Orphanides, G.1
Lagrange, T.2
Reinberg, D.3
-
16
-
-
0033198714
-
The TBP-like factor: An alternative transcription factor in metazoa?
-
J.C. Dantonel, J.M. Wurtz, O. Poch, D. Moras and L. Tora. The TBP-like factor: an alternative transcription factor in metazoa? Trends Biochem. Sci. 24 (1999) 335-9.
-
(1999)
Trends Biochem. Sci
, vol.24
, pp. 335-339
-
-
Dantonel, J.C.1
Wurtz, J.M.2
Poch, O.3
Moras, D.4
Tora, L.5
-
17
-
-
0032722208
-
A human TATA binding protein-related protein with altered DNA binding specificity inhibits transcription from multiple promoters and activators
-
P.A. Moore, et al. A human TATA binding protein-related protein with altered DNA binding specificity inhibits transcription from multiple promoters and activators. Mol. Cell Biol. 19 (1999) 7610-20.
-
(1999)
Mol. Cell Biol
, vol.19
, pp. 7610-7620
-
-
Moore, P.A.1
-
18
-
-
0030596148
-
The crystal structure of a hyperthermophilic archaeal TATA-box binding protein
-
B.S. DeDecker, et al. The crystal structure of a hyperthermophilic archaeal TATA-box binding protein. J. Mol. Biol. 264 (1996) 1072-84.
-
(1996)
J. Mol. Biol
, vol.264
, pp. 1072-1084
-
-
DeDecker, B.S.1
-
19
-
-
0026491908
-
Crystal structure of TFIID TATA-box binding protein
-
D.B. Nikolov, et al. Crystal structure of TFIID TATA-box binding protein. Nature 360 (1992) 40-6.
-
(1992)
Nature
, vol.360
, pp. 40-46
-
-
Nikolov, D.B.1
-
20
-
-
0028056035
-
2.1 A resolution refined structure of a TATA box-binding protein (TBP)
-
D.B. Nikolov and S.K. Burley. 2.1 A resolution refined structure of a TATA box-binding protein (TBP). Nature Struct Biol 1 (1994) 621-37.
-
(1994)
Nature Struct Biol
, vol.1
, pp. 621-637
-
-
Nikolov, D.B.1
Burley, S.K.2
-
22
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATA element
-
J.L. Kim, D.B. Nikolov and S.K. Burley. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365 (1993) 520-7.
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
23
-
-
0027504913
-
Crystal structure of a yeast TBP/TATA-box complex
-
Y. Kim, J.H. Geiger, S. Hahn and P.B. Sigler. Crystal structure of a yeast TBP/TATA-box complex. Nature 365 (1993) 512-20.
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.B.4
-
24
-
-
0027974851
-
1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG
-
J.L. Kim and S.K. Burley. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature Struct Biol 1 (1994) 638-53.
-
(1994)
Nature Struct Biol
, vol.1
, pp. 638-653
-
-
Kim, J.L.1
Burley, S.K.2
-
25
-
-
0029995880
-
Crystal structure of a human TATA box-binding protein/TATA element complex
-
D.B. Nikolov, et al. Crystal structure of a human TATA box-binding protein/TATA element complex. Proc. Natl. Acad. Sci. USA 93 (1996) 4862-7.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 4862-4867
-
-
Nikolov, D.B.1
-
26
-
-
0030590260
-
How proteins recognize the TATA box
-
Z.S. Juo, et al. How proteins recognize the TATA box. J. Mol. Biol. 261 (1996) 239.
-
(1996)
J. Mol. Biol
, vol.261
, pp. 239
-
-
Juo, Z.S.1
-
27
-
-
0028978670
-
Crystal structure of a TFIIB-TBP-TATA-element ternary complex
-
D.B. Nikolov, et al. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377 (1995) 119-28.
-
(1995)
Nature
, vol.377
, pp. 119-128
-
-
Nikolov, D.B.1
-
28
-
-
0029870514
-
Crystal structure of a yeast TFIIA/TBP/DNA complex
-
S. Tan, Y. Hunziker, D.F. Sargent and T.J. Richmond. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature 381 (1996) 127-51.
-
(1996)
Nature
, vol.381
, pp. 127-151
-
-
Tan, S.1
Hunziker, Y.2
Sargent, D.F.3
Richmond, T.J.4
-
29
-
-
0029930779
-
Crystal structure of the yeast TFIIA/TBP/DNA complex
-
J.H. Geiger, S. Hahn, S. Lee and P.B. Sigler. Crystal structure of the yeast TFIIA/TBP/DNA complex. Science 272 (1996) 830-6.
-
(1996)
Science
, vol.272
, pp. 830-836
-
-
Geiger, J.H.1
Hahn, S.2
Lee, S.3
Sigler, P.B.4
-
30
-
-
0031562901
-
The 2.1-A crystal structure of an archaeal preinitiation complex: TATA- box-binding protein/transcription factor (II)B core/TATA-box
-
P.F. Kosa, G. Ghosh, B.S. DeDecker and P.B. Sigler. The 2.1-A crystal structure of an archaeal preinitiation complex: TATA- box-binding protein/transcription factor (II)B core/TATA-box. Proc. Natl. Acad. Sci. USA 94 (1997) 6042-7.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6042-6047
-
-
Kosa, P.F.1
Ghosh, G.2
DeDecker, B.S.3
Sigler, P.B.4
-
31
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP/TFB/promoter complex
-
O. Littlefield, Y. Korkhin and P.B. Sigler. The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc. Natl. Acad. Sci. USA 96 (1999) 13668-73.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13668-13673
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.B.3
-
32
-
-
0034602843
-
Structural basis of preinitiation complex assembly on human Pol II promoters
-
F.T. Tsai and P.B. Sigler. Structural basis of preinitiation complex assembly on human Pol II promoters. EMBO J. 19 (2000) 25-36.
-
(2000)
EMBO J
, vol.19
, pp. 25-36
-
-
Tsai, F.T.1
Sigler, P.B.2
-
33
-
-
0031830815
-
Minor groove-binding architectural proteins: Structure, function, and DNA recognition
-
C.A. Bewley, A.M. Gronenborn and G.M. Clore. Minor groove-binding architectural proteins: structure, function, and DNA recognition. Annu. Rev. Biophys. Biomol. Struct. 27 (1998) 105-31.
-
(1998)
Annu. Rev. Biophys. Biomol. Struct
, vol.27
, pp. 105-131
-
-
Bewley, C.A.1
Gronenborn, A.M.2
Clore, G.M.3
-
34
-
-
0032483558
-
Solution structure of a TBP-TAF(II)230 complex: Protein mimicry of the minor groove surface of the TATA box unwound by TBP
-
D. Liu, et al. Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP. Cell 94 (1998) 573-83.
-
(1998)
Cell
, vol.94
, pp. 573-583
-
-
Liu, D.1
-
35
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
F.C. Bernstein, et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112 (1977) 535-42.
-
(1977)
J. Mol. Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
-
36
-
-
0026742978
-
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids
-
H.M. Berman, et al. The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. Biophys. J. 63 (1992) 751-9.
-
(1992)
Biophys. J
, vol.63
, pp. 751-759
-
-
Berman, H.M.1
-
37
-
-
0027931369
-
Topological localization of the human transcription factors IIA, IIB, TATA box-binding protein, and RNA polymerase II-associated protein 30 on a class II promoter
-
B. Coulombe, J. Li and J. Greenblatt. Topological localization of the human transcription factors IIA, IIB, TATA box-binding protein, and RNA polymerase II-associated protein 30 on a class II promoter. J Biol Chem 269 (1994) 19962-7.
-
(1994)
J Biol Chem
, vol.269
, pp. 19962-19967
-
-
Coulombe, B.1
Li, J.2
Greenblatt, J.3
-
38
-
-
0031011592
-
Visualizing nucleic acids and their complexes using electron microscopy
-
J.D. Griffith, S. Lee and Y.-H. Wang. Visualizing nucleic acids and their complexes using electron microscopy. Curr. Opin. Struct. Biol. 7 (1997) 362-6.
-
(1997)
Curr. Opin. Struct. Biol
, vol.7
, pp. 362-366
-
-
Griffith, J.D.1
Lee, S.2
Wang, Y.-H.3
-
39
-
-
0030730281
-
Trajectory of DNA in the RNA polymerase II transcription preinitiation complex
-
T.K. Kim, et al. Trajectory of DNA in the RNA polymerase II transcription preinitiation complex. Proc. Natl. Acad. Sci. USA 94 (1997) 12268-73.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 12268-12273
-
-
Kim, T.K.1
-
40
-
-
0029785839
-
High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA photocrosslinking: Organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex
-
T. Lagrange, et al. High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA photocrosslinking: organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex. Proc. Natl. Acad. Sci. USA 93 (1996) 10620-5.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10620-10625
-
-
Lagrange, T.1
-
41
-
-
0032522546
-
Structure of wild-type yeast RNA polymerase II and location of Rpb4 and Rpb7
-
G.J. Jensen, G. Meredith, D.A. Bushnell and R.D. Kornberg. Structure of wild-type yeast RNA polymerase II and location of Rpb4 and Rpb7. EMBO J. 17 (1998) 2353-8.
-
(1998)
EMBO J
, vol.17
, pp. 2353-2358
-
-
Jensen, G.J.1
Meredith, G.2
Bushnell, D.A.3
Kornberg, R.D.4
-
42
-
-
0029869460
-
Structural similarity between TAFs and the heterotetrameric core of the histone octamer
-
X. Xie, et al. Structural similarity between TAFs and the heterotetrameric core of the histone octamer. Nature 380 (1996) 316-22.
-
(1996)
Nature
, vol.380
, pp. 316-322
-
-
Xie, X.1
-
43
-
-
0030050454
-
The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon
-
W. Zhu, et al. The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon. Nature Struct. Biol. 3 (1996) 122-4.
-
(1996)
Nature Struct. Biol
, vol.3
, pp. 122-124
-
-
Zhu, W.1
-
44
-
-
0029120954
-
Solution structure of the C-terminal core domain of human TFIIB: Similarity to cyclin A and interaction with TATA-binding protein
-
S. Bagby, et al. Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein. Cell 82 (1995) 857-67.
-
(1995)
Cell
, vol.82
, pp. 857-867
-
-
Bagby, S.1
-
45
-
-
0030694039
-
The cyclin box fold: Protein recognition in cell-cycle and transcription control
-
M.E. Noble, J.A. Endicott, N.R. Brown and L.N. Johnson. The cyclin box fold: protein recognition in cell-cycle and transcription control. Trends Biochem. Sci. 22 (1997) 482-7.
-
(1997)
Trends Biochem. Sci
, vol.22
, pp. 482-487
-
-
Noble, M.E.1
Endicott, J.A.2
Brown, N.R.3
Johnson, L.N.4
-
46
-
-
0026665954
-
Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway
-
B.C. Hoopes, J.F. LeBlanc and D.K. Hawley. Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J Biol Chem 267 (1992) 11539.
-
(1992)
J Biol Chem
, vol.267
, pp. 11539
-
-
Hoopes, B.C.1
LeBlanc, J.F.2
Hawley, D.K.3
-
47
-
-
0029127570
-
DNA bending is an important component of site-specific recognition by the TATA binding protein
-
D.B. Starr, B.C. Hoopes and D.K. Hawley. DNA bending is an important component of site-specific recognition by the TATA binding protein. J. Mol. Biol. 250 (1995) 434.
-
(1995)
J. Mol. Biol
, vol.250
, pp. 434
-
-
Starr, D.B.1
Hoopes, B.C.2
Hawley, D.K.3
-
50
-
-
0029896209
-
Dimerization of TFIID when not bound to DNA
-
A.K. Taggart and B.F. Pugh. Dimerization of TFIID when not bound to DNA. Science 272 (1996) 1331-3.
-
(1996)
Science
, vol.272
, pp. 1331-1333
-
-
Taggart, A.K.1
Pugh, B.F.2
-
51
-
-
0030795734
-
Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding
-
R.A. Coleman and B.F. Pugh. Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding. Proc. Natl. Acad. Sci. USA 94 (1997) 7221-6.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7221-7226
-
-
Coleman, R.A.1
Pugh, B.F.2
-
52
-
-
0033197553
-
TFIIA regulates TBP and TFIID dimers
-
R.A. Coleman, A.K. Taggart, S. Burma, J.J.n. Chicca and B.F. Pugh. TFIIA regulates TBP and TFIID dimers. Mol. Cell 4 (1999) 451-7.
-
(1999)
Mol. Cell
, vol.4
, pp. 451-457
-
-
Coleman, R.A.1
Taggart, A.K.2
Burma, S.3
Chicca, J.J.N.4
Pugh, B.F.5
-
53
-
-
0033152140
-
A role for TBP dimerization in preventing unregulated gene expression
-
A.J. Jackson-Fisher, C. Chitikila, M. Mitra and B.F. Pugh. A role for TBP dimerization in preventing unregulated gene expression. Mol. Cell 3 (1999) 717-27.
-
(1999)
Mol. Cell
, vol.3
, pp. 717-727
-
-
Jackson-Fisher, A.J.1
Chitikila, C.2
Mitra, M.3
Pugh, B.F.4
-
54
-
-
0033621025
-
Dimer dissociation and thermosensitivity kinetics of the Saccharomyces cerevisiae and human TATA binding proteins
-
A.J. Jackson-Fisher, et al. Dimer dissociation and thermosensitivity kinetics of the Saccharomyces cerevisiae and human TATA binding proteins. Biochemistry 38 (1999) 11340-8.
-
(1999)
Biochemistry
, vol.38
, pp. 11340-11348
-
-
Jackson-Fisher, A.J.1
-
55
-
-
0029014933
-
Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA
-
R.A. Coleman and B.F. Pugh. Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA. J. Biol. Chem. 270 (1995) 13850-9.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 13850-13859
-
-
Coleman, R.A.1
Pugh, B.F.2
-
56
-
-
0029080688
-
Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter
-
V. Petri, M. Hsieh and M. Brenowitz. Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter. Biochemistry 34 (1995) 9977-84.
-
(1995)
Biochemistry
, vol.34
, pp. 9977-9984
-
-
Petri, V.1
Hsieh, M.2
Brenowitz, M.3
-
57
-
-
0029008807
-
Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics
-
G.M. Perez-Howard, P.A. Weil and J.M. Beechem. Yeast TATA binding protein interaction with DNA: fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics. Biochemistry 34 (1995) 8005-17.
-
(1995)
Biochemistry
, vol.34
, pp. 8005-8017
-
-
Perez-Howard, G.M.1
Weil, P.A.2
Beechem, J.M.3
-
58
-
-
0029943025
-
Simultaneous binding and bending of promoter DNA by the TATA binding protein: Real time kinetic measurements
-
K.M. Parkhurst, M. Brenowitz and L.J. Parkhurst. Simultaneous binding and bending of promoter DNA by the TATA binding protein: real time kinetic measurements. Biochemistry 35 (1996) 7459-65.
-
(1996)
Biochemistry
, vol.35
, pp. 7459-7465
-
-
Parkhurst, K.M.1
Brenowitz, M.2
Parkhurst, L.J.3
-
59
-
-
0032506171
-
DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: Promoter-dependent differences in the thermodynamics and kinetics of binding
-
V. Petri, M. Hsieh, E. Jamison and M. Brenowitz. DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding. Biochemistry 37 (1998) 15842-9.
-
(1998)
Biochemistry
, vol.37
, pp. 15842-15849
-
-
Petri, V.1
Hsieh, M.2
Jamison, E.3
Brenowitz, M.4
-
60
-
-
0033603388
-
Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex
-
K.M. Parkhurst, R.M. Richards, M. Brenowitz and L.J. Parkhurst. Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex. J. Mol. Biol. 289 (1999) 1327-41.
-
(1999)
J. Mol. Biol
, vol.289
, pp. 1327-1341
-
-
Parkhurst, K.M.1
Richards, R.M.2
Brenowitz, M.3
Parkhurst, L.J.4
-
61
-
-
0028919503
-
Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor
-
J.D. Parvin, R.J. McCormick, P.A. Sharp and D.E. Fisher. Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor. Nature 373 (1995) 724-7.
-
(1995)
Nature
, vol.373
, pp. 724-727
-
-
Parvin, J.D.1
McCormick, R.J.2
Sharp, P.A.3
Fisher, D.E.4
-
62
-
-
0032475962
-
Affinity, Stability and Polarity of Binding of the TATA Binding Protein Governed by Flexure at the TATA Box
-
A. Grove, A. Galeone, E. Yu, L. Mayol and E.P. Geiduschek. Affinity, Stability and Polarity of Binding of the TATA Binding Protein Governed by Flexure at the TATA Box. J. Mol. Biol. 282 (1998) 731-739.
-
(1998)
J. Mol. Biol
, vol.282
, pp. 731-739
-
-
Grove, A.1
Galeone, A.2
Yu, E.3
Mayol, L.4
Geiduschek, E.P.5
-
63
-
-
0017146579
-
Ion effects on ligand-nucleic acid interactions
-
M.T. Record Jr, T.M. Lohman and P. de Haseth. Ion effects on ligand-nucleic acid interactions. J Mol Biol 107 (1976) 145-158.
-
(1976)
J Mol Biol
, vol.107
, pp. 145-158
-
-
Record M.T., Jr.1
Lohman, T.M.2
De Haseth, P.3
-
64
-
-
0017895903
-
The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides
-
G.S. Manning. The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides. Quart. Rev. Biophys. 11 (1978) 179-246.
-
(1978)
Quart. Rev. Biophys
, vol.11
, pp. 179-246
-
-
Manning, G.S.1
-
65
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
R.S. Spolar and M.T.J. Record. Coupling of local folding to site-specific binding of proteins to DNA. Science 263 (1994) 777-84.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record, M.T.J.2
-
66
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
J.M. Sturtevant. Heat capacity and entropy changes in processes involving proteins. Proc. Natl. Acad. Sci. USA 74 (1977) 2236-40.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
67
-
-
0000127073
-
Sequence-specific recognition of double helical nucleic acids by proteins
-
N.C. Seeman, J.M. Rosenberg and A. Rich. Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl. Acad. Sci. USA 73 (1976) 804-8.
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 804-808
-
-
Seeman, N.C.1
Rosenberg, J.M.2
Rich, A.3
-
68
-
-
0032475994
-
A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA
-
C.L. Kielkopf, et al. A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA. Science 282 (1998) 111-5.
-
(1998)
Science
, vol.282
, pp. 111-115
-
-
Kielkopf, C.L.1
-
69
-
-
0026711087
-
Biochemical and genetic characterization of a yeast TFIID mutant that alters transcription in vivo and DNA binding in vitro
-
K.M. Arndt, S.L. Ricupero, D.M. Eisenmann and F. Winston. Biochemical and genetic characterization of a yeast TFIID mutant that alters transcription in vivo and DNA binding in vitro. Mol Cell Biol 12 (1992) 2372-82.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2372-2382
-
-
Arndt, K.M.1
Ricupero, S.L.2
Eisenmann, D.M.3
Winston, F.4
-
70
-
-
0028270659
-
Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition specificities
-
K.M. Arndt, C.R. Wobbe, H.S. Ricupero, K. Struhl and F. Winston. Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition specificities. Mol. Cell. Biol. 14 (1994) 3719-28.
-
(1994)
Mol. Cell. Biol
, vol.14
, pp. 3719-3728
-
-
Arndt, K.M.1
Wobbe, C.R.2
Ricupero, H.S.3
Struhl, K.4
Winston, F.5
-
71
-
-
0026566106
-
Yeast and human TFIID with altered DNA-binding specificity for TATA elements
-
M. Strubin and K. Struhl. Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell 68 (1992) 721-30.
-
(1992)
Cell
, vol.68
, pp. 721-730
-
-
Strubin, M.1
Struhl, K.2
-
72
-
-
0026780180
-
Variants of the TATA-binding protein can distinguish subsets of RNA polymerase I, II, and III promoters
-
M.C. Schultz, R.H. Reeder and S. Hahn. Variants of the TATA-binding protein can distinguish subsets of RNA polymerase I, II, and III promoters. Cell 69 (1992) 697.
-
(1992)
Cell
, vol.69
, pp. 697
-
-
Schultz, M.C.1
Reeder, R.H.2
Hahn, S.3
-
73
-
-
0027418819
-
Genetic and biochemical analyses of yeast TATA-binding protein mutants
-
D. Poon, et al. Genetic and biochemical analyses of yeast TATA-binding protein mutants. J Biol Chem 268 (1993) 5005-13.
-
(1993)
J Biol Chem
, vol.268
, pp. 5005-5013
-
-
Poon, D.1
-
74
-
-
0030061842
-
Protein-protein interactions in eukaryotic transcription initiation: Structure of the preinitiation complex
-
H. Tang, X. Sun, D. Reinberg and R.H. Ebright. Protein-protein interactions in eukaryotic transcription initiation: structure of the preinitiation complex. Proc. Natl. Acad. Sci. USA 93 (1996) 1119-24.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1119-1124
-
-
Tang, H.1
Sun, X.2
Reinberg, D.3
Ebright, R.H.4
-
75
-
-
0029802124
-
Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo
-
G.O. Bryant, L.S. Martel, S.K. Burley and A.J. Berk. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes Dev. 10 (1996) 2491-504.
-
(1996)
Genes Dev
, vol.10
, pp. 2491-2504
-
-
Bryant, G.O.1
Martel, L.S.2
Burley, S.K.3
Berk, A.J.4
-
76
-
-
0025848742
-
Dominant negative mutations in yeast TFIID define a bipartite DNA-binding region
-
P. Reddy and S. Hahn. Dominant negative mutations in yeast TFIID define a bipartite DNA-binding region. Cell 65 (1991) 349-57.
-
(1991)
Cell
, vol.65
, pp. 349-357
-
-
Reddy, P.1
Hahn, S.2
-
77
-
-
0026566679
-
A bipartite DNA binding domain composed of direct repeats in the TATA box binding factor TFIID
-
T. Yamamoto, et al. A bipartite DNA binding domain composed of direct repeats in the TATA box binding factor TFIID. Proc Natl Acad Sci U S A 89 (1992) 2844-8.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 2844-2848
-
-
Yamamoto, T.1
-
78
-
-
0027960116
-
Multiple regions of TBP participate in the response to transcriptional activators in vivo
-
W.P. Tansey, S. Ruppert, R. Tjian and W. Herr. Multiple regions of TBP participate in the response to transcriptional activators in vivo. Genes Dev 8 (1994) 2756-69.
-
(1994)
Genes Dev
, vol.8
, pp. 2756-2769
-
-
Tansey, W.P.1
Ruppert, S.2
Tjian, R.3
Herr, W.4
-
79
-
-
0030987367
-
Transactivation by CIITA, the type II bare lymphocyte syndrome-associated factor, requires participation of multiple regions of the TATA box binding protein
-
S.K. Mahanta, T. Scholl, F.C. Yang and J.L. Strominger. Transactivation by CIITA, the type II bare lymphocyte syndrome- associated factor, requires participation of multiple regions of the TATA box binding protein. Proc. Natl. Acad. Sci. USA 94 (1997) 6324-9.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6324-6329
-
-
Mahanta, S.K.1
Scholl, T.2
Yang, F.C.3
Strominger, J.L.4
-
80
-
-
0033486113
-
A new regulatory domain on the TATA-binding protein
-
Y. Cang, D.T. Auble and G. Prelich. A new regulatory domain on the TATA-binding protein. EMBO J. 18 (1999) 6662-6671.
-
(1999)
EMBO J
, vol.18
, pp. 6662-6671
-
-
Cang, Y.1
Auble, D.T.2
Prelich, G.3
-
81
-
-
0028833228
-
Electrostatic analysis of DNA binding properties in lysine to leucine mutants of TATA-box binding proteins
-
N. Pastor and H. Weinstein. Electrostatic analysis of DNA binding properties in lysine to leucine mutants of TATA-box binding proteins. Protein Eng. 8 (1995) 543-9.
-
(1995)
Protein Eng
, vol.8
, pp. 543-549
-
-
Pastor, N.1
Weinstein, H.2
-
82
-
-
0034082814
-
Binding mechanisms of TATA box-binding proteins: DNA kinking is stabilized by specific hydrogen bonds
-
in press
-
L. Pardo, M. Campillo, D. Bosch, N. Pastor and H. Weinstein. Binding mechanisms of TATA box-binding proteins: DNA kinking is stabilized by specific hydrogen bonds. Biophys. J. in press (2000) .
-
(2000)
Biophys. J
-
-
Pardo, L.1
Campillo, M.2
Bosch, D.3
Pastor, N.4
Weinstein, H.5
-
83
-
-
0031782289
-
Selective binding of the TATA box-binding protein to the TATA box-containing promoter: Analysis of structural and energetic factors
-
L. Pardo, N. Pastor and H. Weinstein. Selective binding of the TATA box-binding protein to the TATA box-containing promoter: analysis of structural and energetic factors. Biophys. J. 75 (1998) 2411-21.
-
(1998)
Biophys. J
, vol.75
, pp. 2411-2421
-
-
Pardo, L.1
Pastor, N.2
Weinstein, H.3
-
84
-
-
0030040722
-
A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding protein
-
G. Guzikevich-Guerstein and Z. Shakked. A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding protein. Nature Struct. Biol. 3 (1996) 32-7.
-
(1996)
Nature Struct. Biol
, vol.3
, pp. 32-37
-
-
Guzikevich-Guerstein, G.1
Shakked, Z.2
-
85
-
-
0031968248
-
Progressive DNA bending is made possible by gradual changes in the torsion angle of the glycosyl bond
-
L. Pardo, N. Pastor and H. Weinstein. Progressive DNA bending is made possible by gradual changes in the torsion angle of the glycosyl bond. Biophys. J. 74 (1998) 2191.
-
(1998)
Biophys. J
, vol.74
, pp. 2191
-
-
Pardo, L.1
Pastor, N.2
Weinstein, H.3
-
86
-
-
0030992537
-
Local DNA stretching mimics the distortion caused by the TATA box-binding protein
-
A. Lebrun, Z. Shakked and R. Lavery. Local DNA stretching mimics the distortion caused by the TATA box- binding protein. Proc. Natl. Acad. Sci. USA 94 (1997) 2993.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2993
-
-
Lebrun, A.1
Shakked, Z.2
Lavery, R.3
-
87
-
-
0033561745
-
Modeling DNA deformations induced by minor groove binding proteins
-
A. Lebrun and R. Lavery. Modeling DNA deformations induced by minor groove binding proteins. Biopolymers 49 (1999) 341-53.
-
(1999)
Biopolymers
, vol.49
, pp. 341-353
-
-
Lebrun, A.1
Lavery, R.2
-
88
-
-
0029895487
-
The low dielectric interior of proteins is sufficient to cause major structural changes in DNA on association
-
A.H. Elcock and J.A. McCammon. The low dielectric interior of proteins is sufficient to cause major structural changes in DNA on association. J. Amer. Chem. Soc. 118 (1996) 3787-3788.
-
(1996)
J. Amer. Chem. Soc
, vol.118
, pp. 3787-3788
-
-
Elcock, A.H.1
McCammon, J.A.2
-
89
-
-
0030852865
-
Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein
-
N. Pastor, L. Pardo and H. Weinstein. Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein. Biophys. J. 73 (1997) 640-52.
-
(1997)
Biophys. J
, vol.73
, pp. 640-652
-
-
Pastor, N.1
Pardo, L.2
Weinstein, H.3
-
91
-
-
0031836876
-
Sequence-dependent dynamics of TATA-Box binding sites
-
D. Flatters and R. Lavery. Sequence-dependent dynamics of TATA-Box binding sites. Biophys. J. 75 (1998) 372-81.
-
(1998)
Biophys. J
, vol.75
, pp. 372-381
-
-
Flatters, D.1
Lavery, R.2
-
92
-
-
0032213753
-
Inherent DNA curvature and flexibility correlate with TATA box functionality
-
O.N. de Souza and R.L. Ornstein. Inherent DNA curvature and flexibility correlate with TATA box functionality. Biopolymers 46 (1998) 403-15.
-
(1998)
Biopolymers
, vol.46
, pp. 403-415
-
-
De Souza, O.N.1
Ornstein, R.L.2
-
93
-
-
6344260593
-
An all-atom empirical energy function for the simulation of nucleic acids
-
A.D. MacKerell Jr, J. Wiorkiewicz-Kuczera and M. Karplus. An all-atom empirical energy function for the simulation of nucleic acids. J Am Chem Soc 117 (1995) 11946.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 11946
-
-
MacKerell A.D., Jr.1
Wiorkiewicz-Kuczera, J.2
Karplus, M.3
-
94
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
W.D. Cornell, et al. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 117 (1995) 5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
-
95
-
-
0031808069
-
Structural equilibrium of DNA represented with different force fields
-
M. Feig and B.M. Pettitt. Structural equilibrium of DNA represented with different force fields. Biophys. J. 75 (1998) 134-49.
-
(1998)
Biophys. J
, vol.75
, pp. 134-149
-
-
Feig, M.1
Pettitt, B.M.2
-
96
-
-
0031237692
-
Experiment vs force fields: DNA conformation from molecular dynamics simulations
-
M. Feig and B.M. Pettitt. Experiment vs force fields: DNA conformation from molecular dynamics simulations. J. Phys. Chem. B 101 (1997) 7361-3.
-
(1997)
J. Phys. Chem B
, vol.101
, pp. 7361-7363
-
-
Feig, M.1
Pettitt, B.M.2
-
97
-
-
0032812795
-
TATA Box DNA deformation with and without the TATA Box-binding Protein
-
N.A. Davis, S.S. Majee and J.D. Kahn. TATA Box DNA Deformation with and without the TATA Box-binding Protein. J. Mol. Biol. 291 (1999) 249-265.
-
(1999)
J. Mol. Biol
, vol.291
, pp. 249-265
-
-
Davis, N.A.1
Majee, S.S.2
Kahn, J.D.3
-
98
-
-
0028624664
-
Bending and curvature calculations in B-DNA
-
D.S. Goodsell and R.E. Dickerson. Bending and curvature calculations in B-DNA. Nucleic Acids Res. 22 (1994) 5497-503.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5497-5503
-
-
Goodsell, D.S.1
Dickerson, R.E.2
-
99
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
W.L. Jorgensen, J. Chandrasekhar, J.D. Madura, R.W. Impey and M.L. Klein. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79 (1983) 926-35.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
100
-
-
0000621151
-
-
(eds. Leontis, N.B. & SantaLucia Jr, J.) (American Chemical Society, San Francisco, CA)
-
N. Pastor, L. Pardo and H. Weinstein. in Molecular Modeling of Nucleic Acids (eds. Leontis, N.B. & SantaLucia Jr, J.) 329-45 (American Chemical Society, San Francisco, CA, 1997).
-
(1997)
Molecular Modeling of Nucleic Acids
, pp. 329-345
-
-
Pastor, N.1
Pardo, L.2
Weinstein, H.3
-
102
-
-
0030706150
-
Functional significance of the TATA element major groove in transcription initiation by RNA polymerase II
-
D.K. Lee, K.C. Wang and R.G. Roeder. Functional significance of the TATA element major groove in transcription initiation by RNA polymerase II. Nucleic Acids Res. 25 (1997) 4338-45.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4338-4345
-
-
Lee, D.K.1
Wang, K.C.2
Roeder, R.G.3
-
103
-
-
0021100688
-
Wrinkled DNA
-
S. Arnott, et al. Wrinkled DNA. Nucleic Acids Res. 11 (1983) 1457-1474.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 1457-1474
-
-
Arnott, S.1
-
104
-
-
0028863271
-
Statistical analysis of DNA duplex structural features
-
N.B. Ulyanov and T.L. James. Statistical analysis of DNA duplex structural features. Methods Enzymol. 261 (1995) 90-120.
-
(1995)
Methods Enzymol
, vol.261
, pp. 90-120
-
-
Ulyanov, N.B.1
James, T.L.2
-
105
-
-
0032566315
-
Nuclear magnetic resonance structure of d(GCATATGATAG). d(CTATCATATGC): A consensus sequence for promoters recognized by sigma K RNA polymerase
-
M. Tonelli, E. Ragg, A.M. Bianucci, K. Lesiak and T.L. James. Nuclear magnetic resonance structure of d(GCATATGATAG). d(CTATCATATGC): a consensus sequence for promoters recognized by sigma K RNA polymerase. Biochemistry 37 (1998) 11745-61.
-
(1998)
Biochemistry
, vol.37
, pp. 11745-11761
-
-
Tonelli, M.1
Ragg, E.2
Bianucci, A.M.3
Lesiak, K.4
James, T.L.5
-
106
-
-
0025309524
-
Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro
-
C.R. Wobbe and K. Struhl. Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro. Mol. Cell. Biol. 10 (1990) 3859-67.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 3859-3867
-
-
Wobbe, C.R.1
Struhl, K.2
-
107
-
-
0028365899
-
TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs
-
J.M. Wong and E. Bateman. TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs. Nucleic Acids Res 22 (1994) 1890-6.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1890-1896
-
-
Wong, J.M.1
Bateman, E.2
-
108
-
-
0024821134
-
Describing protein structure: A general algorithm yielding complete helicoidal parameters and a unique overall axis
-
H. Sklenar, C. Etchebest and R. Lavery. Describing protein structure: a general algorithm yielding complete helicoidal parameters and a unique overall axis. Proteins 6 (1989) 46-60.
-
(1989)
Proteins
, vol.6
, pp. 46-60
-
-
Sklenar, H.1
Etchebest, C.2
Lavery, R.3
-
109
-
-
0029994425
-
Analysis of co-crystal structures to identify the stereochemical determinants of the orientation of TBP on the TATA box
-
M. Suzuki, M.D. Allen, N. Yagi and J.T. Finch. Analysis of co-crystal structures to identify the stereochemical determinants of the orientation of TBP on the TATA box. Nucleic Acids Res. 24 (1996) 2767-73.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2767-2773
-
-
Suzuki, M.1
Allen, M.D.2
Yagi, N.3
Finch, J.T.4
-
110
-
-
0030005131
-
Simulating DNA at low resolution
-
W.K. Olson. Simulating DNA at low resolution. Curr. Opin. Struct. Biol. 6 (1996) 242-56.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 242-256
-
-
Olson, W.K.1
-
111
-
-
0031456020
-
Bidirectional binding of the TATA box binding protein to the TATA box
-
J.M. Cox, et al. Bidirectional binding of the TATA box binding protein to the TATA box. Proc. Natl. Acad. Sci. USA 94 (1997) 13475-80.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13475-13480
-
-
Cox, J.M.1
-
112
-
-
0030048596
-
Role of base-backbone and base-base interactions in alternating DNA conformations
-
M. Suzuki, N. Yagi and J.T. Finch. Role of base-backbone and base-base interactions in alternating DNA conformations. FEBS Lett. 379 (1996) 148-52.
-
(1996)
FEBS Lett.
, vol.379
, pp. 148-152
-
-
Suzuki, M.1
Yagi, N.2
Finch, J.T.3
-
113
-
-
0032577337
-
The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon
-
R. O'Brien, B. DeDecker, K.G. Fleming, P.B. Sigler and J.E. Ladbury. The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon. J. Mol. Biol. 279 (1998) 117-25.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 117-125
-
-
O'Brien, R.1
DeDecker, B.2
Fleming, K.G.3
Sigler, P.B.4
Ladbury, J.E.5
-
114
-
-
0032895752
-
TIT for TAT: The properties of inosine and adenosine in TATA box DNA
-
N. Pastor, A.D. MacKerell, Jr. and H. Weinstein. TIT for TAT: the properties of inosine and adenosine in TATA box DNA. J. Biomol. Struct. Dyn. 16 (1999) 787-810.
-
(1999)
J. Biomol. Struct. Dyn.
, vol.16
, pp. 787-810
-
-
Pastor, N.1
MacKerell A.D., Jr.2
Weinstein, H.3
-
116
-
-
0000293654
-
Structural analysis of molecular solutions based on quasi-component distribution functions. Application to [H2CO]aq at 25 oC
-
P.K. Mehrotra and D.L. Beveridge. Structural analysis of molecular solutions based on quasi-component distribution functions. Application to [H2CO]aq at 25 oC. J. Am. Chem. Soc. 102 (1980) 4287-94.
-
(1980)
J. Am. Chem. Soc.
, vol.102
, pp. 4287-4294
-
-
Mehrotra, P.K.1
Beveridge, D.L.2
-
117
-
-
0022462967
-
Structural chemistry of biomolecular hydration via computer simulation: The proximity criterion
-
M. Mezei and D.L. Beveridge. Structural chemistry of biomolecular hydration via computer simulation: the proximity criterion. Methods Enzymol. 127 (1986) 2147.
-
(1986)
Methods Enzymol.
, vol.127
, pp. 21-47
-
-
Mezei, M.1
Beveridge, D.L.2
-
118
-
-
0029916115
-
DNA binding by TATA-box binding protein (TBP): A molecular dynamics computational study
-
K. Miaskiewicz and R.L. Ornstein. DNA binding by TATA-box binding protein (TBP): a molecular dynamics computational study. J. Biomol. Struct. Dyn. 13 (1996) 593-600.
-
(1996)
J. Biomol. Struct. Dyn.
, vol.13
, pp. 593-600
-
-
Miaskiewicz, K.1
Ornstein, R.L.2
-
119
-
-
84988053694
-
An all atom force field for simulations of proteins and nucleic acids
-
S.J. Weiner, P.A. Kollman, D.T. Nguyen and D.A. Case. An all atom force field for simulations of proteins and nucleic acids. J Comp Chem 7 (1986) 230-252.
-
(1986)
J Comp Chem
, vol.7
, pp. 230-252
-
-
Weiner, S.J.1
Kollman, P.A.2
Nguyen, D.T.3
Case, D.A.4
-
120
-
-
85031197108
-
Sidechain dynamics and seuqence specific TBP binding to TATA box DNA
-
N. Pastor and H. Weinstein. Sidechain dynamics and seuqence specific TBP binding to TATA box DNA. Biophys. J. 76 (1999) A387.
-
(1999)
Biophys J
, vol.76
-
-
Pastor, N.1
Weinstein, H.2
-
121
-
-
0026503020
-
Transcription factor TFIID induces DNA bending upon binding to the TATA element
-
M. Horikoshi, et al. Transcription factor TFIID induces DNA bending upon binding to the TATA element. Proc Natl Acad Sci U S A 89 (1992) 1060-4.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 1060-1064
-
-
Horikoshi, M.1
-
122
-
-
0025048360
-
A downstream initiation element required for efficient TATA box binding and in vitro function of TFIID
-
Y. Nakatani, et al. A downstream initiation element required for efficient TATA box binding and in vitro function of TFIID. Nature 348 (1990) 86-8.
-
(1990)
Nature
, vol.348
, pp. 86-88
-
-
Nakatani, Y.1
-
123
-
-
0027255450
-
Transcription factor TFIID recognizes DNA sequences downstream of the TATA element in the Hsp70 heat shock gene
-
P.A. Emanuel and D.S. Gilmour. Transcription factor TFIID recognizes DNA sequences downstream of the TATA element in the Hsp70 heat shock gene. Proc. Natl. Acad. Sci. USA 90 (1993) 8449-53.
-
(1993)
Natl Acad Sci USA
, vol.90
, pp. 8449-8453
-
-
Emanuel, P.A.1
Gilmour, D.S.2
-
124
-
-
0030668928
-
Mechanism of synergy between TATA and initiator: Synergistic binding of TFIID following a putative TFIIA-induced isomerization
-
K.H. Emami, A. Jain and S.T. Smale. Mechanism of synergy between TATA and initiator: synergistic binding of TFIID following a putative TFIIA-induced isomerization. Genes Dev. 11 (1997) 3007-19.
-
(1997)
Genes Dev
, vol.11
, pp. 3007-3019
-
-
Emami, K.H.1
Jain, A.2
Smale, S.T.3
-
125
-
-
0033500157
-
Analysis of TFIIA Function In Vivo: Evidence for a Role in TATA-Binding Protein Recruitment and Gene-Specific Activation
-
Q. Liu, S.E. Gabriel, K.L. Roinick, R.D. Ward and K.M. Arndt. Analysis of TFIIA Function In Vivo: Evidence for a Role in TATA-Binding Protein Recruitment and Gene-Specific Activation. Mol. Cell Biol. 19 (1999) 8673-8685.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 8673-8685
-
-
Liu, Q.1
Gabriel, S.E.2
Roinick, K.L.3
Ward, R.D.4
Arndt, K.M.5
-
126
-
-
0030055654
-
TBP binds the transcriptionally inactive TA5 sequence but the resulting complex is not efficiently recognised by TFIIB and TFIIA
-
J. Bernues, P. Carrera and F. Azorin. TBP binds the transcriptionally inactive TA5 sequence but the resulting complex is not efficiently recognised by TFIIB and TFIIA. Nucleic Acids Res. 24 (1996) 2950-8.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2950-2958
-
-
Bernues, J.1
Carrera, P.2
Azorin, F.3
|