Trajectory of DNA in the RNA polymerase II transcription preinitiation complex

Proceedings of the National Academy of Sciences of the United States of America

Volumn 94, Issue 23, 1997, Pages 12268-12273

  Kim, Tae Kyung ^a   Lagrange, Thierry ^a   Wang, Yuh Hwa ^b   Griffith, Jack D ^b   Reinberg, Danny ^a   Ebright, Richard H ^c  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^c RUTGERS UNIVERSITY   (United States)

Author keywords

DNA bending; DNA compaction; DNA wrapping; Electron microscopy; Protein DNA photocrosslinking

Indexed keywords

RNA POLYMERASE II; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR II B; TRANSCRIPTION FACTOR II F; UNCLASSIFIED DRUG;

ARTICLE; CROSS LINKING; ELECTRON MICROSCOPY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA INTERACTION; TRANSCRIPTION INITIATION;

ANIMALS; BASE SEQUENCE; CROSS-LINKING REAGENTS; DNA; DNA-DIRECTED RNA POLYMERASES; HUMANS; MICROSCOPY, ELECTRON; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; TRANSCRIPTION, GENETIC;

EID: 0030730281     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.94.23.12268     Document Type: Article

References (54)

1. Orphanides, G., Lagrange, T. & Reinberg, D. (1996) Genes Dev. 8, 2657-2683.
2. Roeder, R. (1996) Trends Biochem. Sci. 21, 327-335.
3. Nikolov, D. & Burley, S. (1997) Proc. Natl. Acad. Sci. USA 94, 15-22.
4. Conaway, R., Garrett, P., Hanley, J. & Conaway, J. (1991) Proc. Natl. Acad. Sci. USA 88, 6205-6209.
5. Flores, O., Lu, H., Killeen, M., Greenblatt, J., Burton, Z. & Reinberg, D. (1991) Proc. Natl. Acad. Sci. USA 88, 9999-10003.
6. Parvin, J. & Sharp, P. (1993) Cell 73, 533-540.
7. Timmers, H. T. M. (1994) EMBO J. 13, 391-399.
8. Parvin, J., Shykind, B., Meyers, R., Kim, J. & Sharp, P. (1994) J. Biol. Chem. 269, 18414-18421.
9. Pan, G. & Greenblatt, J. (1994) J. Biol. Chem. 269, 30101-30104.
10. Holstege, F., Tantin, D., Carey, M., van der Vliet, P. & Timmers, H. T. M. (1995) EMBO J. 14, 810-819.
11. Holstege, F., van der Vliet, P. & Timmers, H. T. M. (1996) EMBO J. 15, 1666-1677.
12. Spassky, A., Kirkegaard, K. & Buc, H. (1985) Biochemistry 24, 2723-2731.
13. Cowing, D., Mecsas, J. Record, M. T. & Gross, C. (1989) J. Mol. Biol. 210, 521-530.
14. Schickor, P., Metzger, W., Werel, W., Lederer, H. & Heumann, H. (1990) EMBO J. 19, 2215-2220.
15. Mecsas, J., Cowing, D. & Gross, C. (1991) J. Mol. Biol. 220, 585-597.
16. Kim, Y., Geiger, J., Hahn, S. & Sigler, P. (1993) Nature (London) 365, 512-520.
17. Kim, J., Nikolov, D. & Burley, S. (1993) Nature (London) 365, 520-527.
18. Nikolov, D., Chen, H., Halay, E., Usheva, A., Hisatake, K., Lee, D. K., Roeder, R. & Burley, S. (1995) Nature (London) 377, 119-128.
19. Darst, S., Edwards, A., Kubalek, E. & Kornberg, R. (1991) Cell 66, 121-128.
20. Leuther, K., Bushnell, D. & Kornberg, R. (1996) Cell 85, 773-779.
21. Lagrange, T., Kim, T.-K., Orphanides, G., Ebright, Y., Ebright, R. & Reinberg, D. (1996) Proc. Natl. Acad. Sci. USA 93, 10620-10625.
22. Mayer, A. & Barany, F. (1995) Gene 153, 1-8.
23. Maldonado, E., Ha, I., Cortes, P., Weis, L. & Reinberg, D. (1990) Mol. Cell. Biol. 10, 6335-6347.
24. Maldonado, E., Drapkin, R. & Reinberg, D. (1996) Methods Enzymol. 274, 72-100.
25. Bartholomew, B., Kassavetis, G. & Geiduschek, E. P. (1991) Mol. Cell. Biol. 11, 5181-5189.
26. Tan, S., Conaway, R. & Conaway, J. (1994) BioTechniques 16, 824-828.
27. Wang, B. & Burton, Z. (1995) J. Biol. Chem. 270, 27035-27044.
28. Hansen, J., Pheiffer, B. & Boehnert, J. (1980) Anal. Biochem. 105, 192-201.
29. Griffith, J., Makhov, A., Zawel, L. & Reinberg, D. (1995) J. Mol. Biol. 246, 576-584.
30. Sawadogo, M. & Roeder, R. (1985) Cell 43, 165-175.
31. Robert, F., Forget, D., Li, J., Greenblatt, J. & Coulombe, B. (1996) J. Biol. Chem. 271, 8517-8520.
32. Forget, D., Robert, F., Grondin, G., Burton, Z., Greenblatt, J. & Coulombe, B. (1997) Proc. Natl. Acad. Sci. USA 94, 7150-7155.
33. van Dyke, M., Roeder, R. & Sawadogo, M. (1988) Science 241, 1335-1338.
34. Buratowski, S., Hahn, S., Guarante, L. & Sharp, P. (1989) Cell 56, 549-561.
35. Wolffe, A. (1995) Chromatin, Structure and Function (Academic, London).
36. Kornberg, R. (1996) Trends Biochem. Sci. 21, 325-326.
37. Geiger, J., Hahn, S., Lee, S. & Sigler, P. (1996) Science 272, 830-836.
38. Tan, S., Hunziker, Y., Sargent, D. & Richmond, T. (1996) Nature (London) 381, 127-134.
39. Schultz, P., Celia, H., Riva, M., Sentenac, A. & Oudet, P. (1993) EMBO J. 12, 2601-2607.
40. Polyakov, A., Severinova, E. & Darst, S. (1995) Cell 83, 365-373.
41. Young, R. (1991) Annu. Rev. Biochem. 60, 689-715.
42. Sentenac, A., Riva, M., Thuriaux, P., Buhler, J.-M., Treich, I., Carles, C., Werner, M., Ruet, A., Huet, J., Mann, C., Chiannilkulchai, N., Stettler, S. & Mariotte, S. (1992) in Transcriptional Regulation, eds. McKnight, S. & Yamamoto, K. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 27-54.
43. Simpson, R. (1979) Cell 18, 277-285.
44. Chenchick, A., Beabealashvilli, R. & Mirzabekov, A. (1981) FEBS Lett. 128, 46-50.
45. Bartholomew, B., Durkovich, D., Kassavetis, G. & Geiduschek, E. P. (1993) Mol. Cell. Biol. 13, 942-952.
46. Bartholomew, B., Braun, B., Kassavetis, G. & Geiduschek, E. P. (1994) J. Biol. Chem. 269, 18090-18095.
47. Nudler, E., Avetissova, E., Markovtsov, V. & Goldfarb, A. (1996) Science 273, 211-217.
48. Heumann, H., Ricchetti, M. & Werel, W. (1988) EMBO J. 7, 4379-4381.
49. Rees, W., Keller, R., Vesenka, J., Yang, G. & Bustamante, C. (1993) Science 260, 1646-1649.
50. Meyers-Almes, F., Heumann, H. & Porschke, D. (1994) J. Mol. Biol. 236, 1-6.
51. Rippe, K., Guthold, M., von Hippel, P. & Bustamante, C. (1997) J. Mol. Biol. 270, 125-138.
52. Bue, H. (1986) Biochem. Soc. Trans. 14, 196-199.
53. Amouyal, H. & Bue, H. (1987) J. Mol. Biol. 195, 795-808.
54. Craig, M., Suh, W. & Record, M. T. (1995) Biochemistry 34, 15624-15632.