-
1
-
-
0031736121
-
Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
-
ARAVIND, L., R. L. TATUSOV, Y. I. WOLF, D. R. WALKER, AND E. V. KOONIN. 1998. Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles. Trends Genet. 14:442-444.
-
(1998)
Trends Genet.
, vol.14
, pp. 442-444
-
-
Aravind, L.1
Tatusov, R.L.2
Wolf, Y.I.3
Walker, D.R.4
Koonin, E.V.5
-
2
-
-
0028839560
-
Heterogeneity of genome size among natural isolates of Escherichia coli
-
BERGTHORSSON, U., AND H. OCHMAN. 1995. Heterogeneity of genome size among natural isolates of Escherichia coli. J. Bacteriol. 177:5784-5789.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5784-5789
-
-
Bergthorsson, U.1
Ochman, H.2
-
3
-
-
0031963154
-
Distribution of chromosome length variation in natural isolates of Escherichia coli
-
BERGTHORSSON, U., AND H. OCHMAN. 1998. Distribution of chromosome length variation in natural isolates of Escherichia coli. Mol. Biol. Evol. 15:6-16.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 6-16
-
-
Bergthorsson, U.1
Ochman, H.2
-
4
-
-
0024006345
-
Context-connected shift pattern of the frequencies of synonymous codons in Escherichia coli
-
in Russian
-
BORODOVSKII, M. Y., V. A. SHEPELEV, AND A. A. ALEKSANDROV. 1988. Context-connected shift pattern of the frequencies of synonymous codons in Escherichia coli. Mol. Biol. 22:767-779 (in Russian).
-
(1988)
Mol. Biol.
, vol.22
, pp. 767-779
-
-
Borodovskii, M.Y.1
Shepelev, V.A.2
Aleksandrov, A.A.3
-
5
-
-
0030788417
-
Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases
-
BROWN, J. R., F. T. ROBB, R. WEISS, AND W. F. DOOLITTLE. 1997. Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases. J. Mol. Evol. 45:9-16.
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 9-16
-
-
Brown, J.R.1
Robb, F.T.2
Weiss, R.3
Doolittle, W.F.4
-
6
-
-
0023649099
-
The mob and oriT mobilization functions of a bacterial plasmid promote its transfer to plants
-
BUCHANAN-WOLLASTON, V., J. E. PASSIATORE, AND F. CANON. 1987. The mob and oriT mobilization functions of a bacterial plasmid promote its transfer to plants. Nature 328:170-175.
-
(1987)
Nature
, vol.328
, pp. 170-175
-
-
Buchanan-Wollaston, V.1
Passiatore, J.E.2
Canon, F.3
-
7
-
-
0019348834
-
Evolutionary significance of accessory DNA elements in bacteria
-
CAMPBELL, A. 1981. Evolutionary significance of accessory DNA elements in bacteria. Annu. Rev. Microbiol. 35:55-83.
-
(1981)
Annu. Rev. Microbiol.
, vol.35
, pp. 55-83
-
-
Campbell, A.1
-
8
-
-
0033529862
-
Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA
-
CAMPBELL, A., J. MRAZEK, AND S. KARLIN. 1999. Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc. Natl. Acad. Sci. USA 96:9184-9189.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9184-9189
-
-
Campbell, A.1
Mrazek, J.2
Karlin, S.3
-
9
-
-
0032425482
-
The diverse and dynamic structure of bacterial genomes
-
CASJENS, S. 1998. The diverse and dynamic structure of bacterial genomes. Annu. Rev. Genet. 32:339-377.
-
(1998)
Annu. Rev. Genet.
, vol.32
, pp. 339-377
-
-
Casjens, S.1
-
10
-
-
0035527404
-
Bacterial species and speciation
-
this issue
-
COHAN, F. M. 2001. Bacterial species and speciation. Sys. Biol. 50: (this issue).
-
(2001)
Sys. Biol.
, vol.50
-
-
Cohan, F.M.1
-
12
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
DOOLITTLE, W. F. 1999b. Phylogenetic classification and the universal tree. Science 284:2124-2129.
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
13
-
-
0031916242
-
Rates of spontaneous mutation
-
DRAKE, J. W., B. CHARLESWORTH, D. CHARLESWORTH, AND J. F. CROW. 1998. Rates of spontaneous mutation. Genetics 148:1667-1686.
-
(1998)
Genetics
, vol.148
, pp. 1667-1686
-
-
Drake, J.W.1
Charlesworth, B.2
Charlesworth, D.3
Crow, J.F.4
-
14
-
-
0025130018
-
The molecular evolution of alkaline phosphatase: Correlating variation among enteric bacteria to experimental manipulations of the protein
-
DUBOSE, R. F., AND D. L. HARTL. 1990. The molecular evolution of alkaline phosphatase: Correlating variation among enteric bacteria to experimental manipulations of the protein. Mol. Biol. Evol. 7:547-577.
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 547-577
-
-
Dubose, R.F.1
Hartl, D.L.2
-
15
-
-
0031981808
-
Santa Rosalia revisited: Why are there so many species of bacteria?
-
DYKHUIZEN, D. E. 1998. Santa Rosalia revisited: Why are there so many species of bacteria? Antoine van Leeuwenhoek 73:25-33.
-
(1998)
Antoine Van Leeuwenhoek
, vol.73
, pp. 25-33
-
-
Dykhuizen, D.E.1
-
16
-
-
0025788069
-
Recombination in Escherichia coli and the definition of biological species
-
DYKHUIZEN, D. E., AND L. GREEN. 1991. Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173:7257-7268.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7257-7268
-
-
Dykhuizen, D.E.1
Green, L.2
-
17
-
-
0034128665
-
Estimating recombinational parameters in streptococcus pneumoniae from multilocus sequence typing data
-
FEIL, E. J., J. M. SMITH, M. C. ENRIGHT, AND B. G. SPRATT. 2000. Estimating recombinational parameters in streptococcus pneumoniae from multilocus sequence typing data. Genetics 154:1439-1450.
-
(2000)
Genetics
, vol.154
, pp. 1439-1450
-
-
Feil, E.J.1
Smith, J.M.2
Enright, M.C.3
Spratt, B.G.4
-
18
-
-
0032949947
-
Glyceraldehyde-3-phosphate dehydrogenase genes in eubacteria and eukaryotes: Evidence for intra- and inter-kingdom gene transfer
-
FIGGE, R. M., M. SCHUBERT, H. BRINKMANN, AND R. CERFF. 1999. Glyceraldehyde-3-phosphate dehydrogenase genes in eubacteria and eukaryotes: Evidence for intra- and inter-kingdom gene transfer. Mol. Biol. Evol. 16:429-140.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 429-1140
-
-
Figge, R.M.1
Schubert, M.2
Brinkmann, H.3
Cerff, R.4
-
19
-
-
0024722874
-
+-ATPase: Implications for the origin of eukaryotes
-
+-ATPase: Implications for the origin of eukaryotes. Proc. Natl. Acad. Sci. USA 86:6661-6665.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6661-6665
-
-
Gogarten, J.P.1
Kibak, H.2
Dittrich, P.3
Taiz, L.4
Bowman, E.J.5
Bowman, B.J.6
Manolson, M.F.7
Poole, R.J.8
Date, T.9
Oshima, T.10
-
20
-
-
0031966661
-
The structural basis of molecular adaptation
-
GOLDING, G. B., AND A. M. DEAN. 1998. The structural basis of molecular adaptation. Mol. Biol. Evol. 15:355-369.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 355-369
-
-
Golding, G.B.1
Dean, A.M.2
-
21
-
-
0031735878
-
The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery
-
GRIBALDO, S., AND P. CAMMARANO. 1998. The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery. J. Mol. Evol. 47:508-516.
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 508-516
-
-
Gribaldo, S.1
Cammarano, P.2
-
22
-
-
0031436694
-
Recombination and clonality in natural populations of Escherichia coli
-
GUTTMAN, D. S. 1997. Recombination and clonality in natural populations of Escherichia coli. trends Ecol. Evol. 12:16-22.
-
(1997)
Trends Ecol. Evol.
, vol.12
, pp. 16-22
-
-
Guttman, D.S.1
-
23
-
-
0028605344
-
Clonal divergence in Escherichia coli as a result of recombination, not mutation
-
GUTTMAN, D. S., AND D. E. DYKHUIZEN. I994a. Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 266:1380-1383.
-
(1994)
Science
, vol.266
, pp. 1380-1383
-
-
Guttman, D.S.1
Dykhuizen, D.E.2
-
24
-
-
0028030110
-
Detecting selective sweeps in naturally occurring Escherichia coli
-
GUTTMAN, D. S., AND D. E. DYKHUIZEN. 1994b. Detecting selective sweeps in naturally occurring Escherichia coli. Genetics 138:993-1003.
-
(1994)
Genetics
, vol.138
, pp. 993-1003
-
-
Guttman, D.S.1
Dykhuizen, D.E.2
-
25
-
-
0032813386
-
Mobile gene cassettes and integrons in evolution
-
HALL, R. M., C. M. COLLIS, M. J. KIM, S. R. PARTRIDGE, G. D. RECCHIA, AND H. W. STOKES. 1999. Mobile gene cassettes and integrons in evolution. Ann. N.Y. Acad. Sci. 870:68-80.
-
(1999)
Ann. N.Y. Acad. Sci.
, vol.870
, pp. 68-80
-
-
Hall, R.M.1
Collis, C.M.2
Kim, M.J.3
Partridge, S.R.4
Recchia, G.D.5
Stokes, H.W.6
-
26
-
-
0021697065
-
The population genetics of Escherichia coli
-
HARTL, D. L., AND D. E. DYKHUIZEN. 1984. The population genetics of Escherichia coli. Annu. Rev. Genet. 18:31-68.
-
(1984)
Annu. Rev. Genet.
, vol.18
, pp. 31-68
-
-
Hartl, D.L.1
Dykhuizen, D.E.2
-
27
-
-
0024323555
-
Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeast
-
HEINEMANN, J. A., AND G. F. J. SPRAGUE. 1989. Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeast. Nature 340:205-209.
-
(1989)
Nature
, vol.340
, pp. 205-209
-
-
Heinemann, J.A.1
Sprague, G.F.J.2
-
29
-
-
0033058895
-
Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes
-
ITOH, T., K. TAKEMOTO, H. MORI, AND T. GOJOBORI. 1999. Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol. Biol. Evol. 16:332-346.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 332-346
-
-
Itoh, T.1
Takemoto, K.2
Mori, H.3
Gojobori, T.4
-
30
-
-
0024358140
-
Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
-
IWABE, N., K.-I. KUMA, M. HASEGAWA, S. OSAWA, AND T. MIYATA. 1989. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 9355-9359
-
-
Iwabe, N.1
Kuma, K.-I.2
Hasegawa, M.3
Osawa, S.4
Miyata, T.5
-
31
-
-
0032173634
-
Global dinucleotide signatures and analysis of genomic heterogeneity
-
KARLIN, S. 1998. Global dinucleotide signatures and analysis of genomic heterogeneity. Curr. Opin. Microbiol. 1:598-610.
-
(1998)
Curr. Opin. Microbiol.
, vol.1
, pp. 598-610
-
-
Karlin, S.1
-
32
-
-
0003880358
-
-
Cambridge Univ. Press, Cambridge
-
KING, M. 1993. Species evolution. Cambridge Univ. Press, Cambridge.
-
(1993)
Species Evolution
-
-
King, M.1
-
33
-
-
0030809629
-
Selfish operons and speciation by gene transfer
-
LAWRENCE, J. G. 1997. Selfish operons and speciation by gene transfer. Trends Microbiol. 5:355-359.
-
(1997)
Trends Microbiol.
, vol.5
, pp. 355-359
-
-
Lawrence, J.G.1
-
34
-
-
0032855518
-
Gene transfer, speciation, and the evolution of bacterial genomes
-
LAWRENCE, J. G. 1999a. Gene transfer, speciation, and the evolution of bacterial genomes. Curr. Opin. Microbiol. 2:519-523.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 519-523
-
-
Lawrence, J.G.1
-
35
-
-
0032793852
-
Selfish operons: The evolutionary impact of gene clustering in the prokaryotes and eukaryotes
-
LAWRENCE, J. G. 1999b. Selfish operons: The evolutionary impact of gene clustering in the prokaryotes and eukaryotes. Curr. Opin. Genet. Dev. 9:642-648.
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 642-648
-
-
Lawrence, J.G.1
-
36
-
-
0002822413
-
Clustering of antibiotic resistance genes : Beyond the selfish operon
-
LAWRENCE, J. G. 2000. Clustering of antibiotic resistance genes : Beyond the selfish operon. ASM News 66:281-286.
-
(2000)
ASM News
, vol.66
, pp. 281-286
-
-
Lawrence, J.G.1
-
37
-
-
0030994798
-
Amelioration of bacterial genomes: Rates of change and exchange
-
LAWRENCE, J. G., AND H. OCHMAN. 1997. Amelioration of bacterial genomes: Rates of change and exchange. J. Mol. Evol. 44:383-397.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
38
-
-
0032482924
-
Molecular archaeology of the Escherichia coli genome
-
LAWRENCE, J. G., AND H. OCHMAN. 1998. Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. USA 95:9413-9417.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9413-9417
-
-
Lawrence, J.G.1
Ochman, H.2
-
39
-
-
0029847554
-
Selfish operons: Horizontal transfer may drive the evolution of gene clusters
-
LAWRENCE, J. G., AND J. R. ROTH. 1996. Selfish operons: Horizontal transfer may drive the evolution of gene clusters. Genetics 143:1843-1860.
-
(1996)
Genetics
, vol.143
, pp. 1843-1860
-
-
Lawrence, J.G.1
Roth, J.R.2
-
40
-
-
0004226949
-
Roles of horizontal transfer in bacterial evolution
-
(M. Syvanen, and C. I. Kado, eds.). Chapman and Hall, London
-
LAWRENCE, J. G., AND J. R. ROTH. 1998. Roles of horizontal transfer in bacterial evolution. Pages 208-225 in Horizontal Ttransfer (M. Syvanen, and C. I. Kado, eds.). Chapman and Hall, London.
-
(1998)
Horizontal Ttransfer
, pp. 208-225
-
-
Lawrence, J.G.1
Roth, J.R.2
-
41
-
-
0002500640
-
Genomic flux: Genome evolution by gene loss and acquisition
-
(R. L. Charlebois, ed.). ASM Press, Washington, D.C.
-
LAWRENCE, J. G., AND J. R. ROTH. 1999. Genomic flux: Genome evolution by gene loss and acquisition. Pages 263-289 in Organization of the prokaryotic genome (R. L. Charlebois, ed.). ASM Press, Washington, D.C.
-
(1999)
Organization of the Prokaryotic Genome
, pp. 263-289
-
-
Lawrence, J.G.1
Roth, J.R.2
-
42
-
-
0034691077
-
Bacteria are different: Observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes
-
LEVIN, B. R., AND C. T. BERGSTROM. 2000. Bacteria are different: Observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes. Proc. Natl. Acad. Sci. USA 97:6981-6985.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6981-6985
-
-
Levin, B.R.1
Bergstrom, C.T.2
-
44
-
-
0033533618
-
Thermotoga heats up lateral gene transfer
-
LOGSDON, J. M., AND D. M. FUGUY. 1999. Thermotoga heats up lateral gene transfer. Curr. Biol. 9:R747-R751.
-
(1999)
Curr. Biol.
, vol.9
-
-
Logsdon, J.M.1
Fuguy, D.M.2
-
45
-
-
0031930791
-
The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus
-
MAJEWSKI, J., AND F. M. COHAN. 1998. The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus. Genetics 148:13-18.
-
(1998)
Genetics
, vol.148
, pp. 13-18
-
-
Majewski, J.1
Cohan, F.M.2
-
46
-
-
0032709783
-
DNA sequence similarity requirements for interspecific recombination in Bacillus
-
MAJEWSKI, J., AND F. M. COHAN. 1999. DNA sequence similarity requirements for interspecific recombination in Bacillus. Genetics 153:1525-1533.
-
(1999)
Genetics
, vol.153
, pp. 1525-1533
-
-
Majewski, J.1
Cohan, F.M.2
-
47
-
-
0033959357
-
Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation
-
MAJEWSKI, J., P. ZAwADZKI, P. PICKERILL, F. M. COHAN, AND C. G. DOWSON. 2000. Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. J. Bacteriol. 182:1016-1023.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1016-1023
-
-
Majewski, J.1
Zawadzki, P.2
Pickerill, P.3
Cohan, F.M.4
Dowson, C.G.5
-
48
-
-
0033054580
-
Directed evolution of the surface chemistry of the reporter enzyme beta-glucuronidase
-
MATSUMURA, I., J. B. WALLINGFORD, N. K. SURANA, P. D. VIZE, AND A. D. ELLINGTON. 1999. Directed evolution of the surface chemistry of the reporter enzyme beta-glucuronidase. Nat. Biotechnol. 17:696-701.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 696-701
-
-
Matsumura, I.1
Wallingford, J.B.2
Surana, N.K.3
Vize, P.D.4
Ellington, A.D.5
-
49
-
-
0032584169
-
"Black holes" and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli
-
MAURELLI, A. T., R. E. FERNÁNDEZ, C. A. BLOCH, C. K. RODE, AND A. FASANO. 1998. "Black holes" and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli. Proc. Natl. Acad. Sci. USA 95:3943-3948.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3943-3948
-
-
Maurelli, A.T.1
Fernández, R.E.2
Bloch, C.A.3
Rode, C.K.4
Fasano, A.5
-
50
-
-
0027287389
-
How clonal are bacteria?
-
MAYNARD SMITH, J., N. H. SMITH, M. O'ROURKE, AND B. G. SPRATT. 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. USA 90:4384-4388.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 4384-4388
-
-
Maynard Smith, J.1
Smith, N.H.2
O'Rourke, M.3
Spratt, B.G.4
-
52
-
-
0002175468
-
Change of genetic environment and evolution
-
(J. S. Huxley, A. C. Hardy, and E. B. Ford, eds.). Allen and Unwin, London
-
MAYR, E. 1954. Change of genetic environment and evolution. Pages 156-180 in Evolution as a process (J. S. Huxley, A. C. Hardy, and E. B. Ford, eds.). Allen and Unwin, London.
-
(1954)
Evolution as a Process
, pp. 156-180
-
-
Mayr, E.1
-
53
-
-
0003401433
-
-
Harvard Univ. Press, Cambridge, Massachusetts
-
MAYR, E. 1963. Animal species and evolution. Harvard Univ. Press, Cambridge, Massachusetts.
-
(1963)
Animal Species and Evolution
-
-
Mayr, E.1
-
54
-
-
0026332291
-
Evidence for horizontal gene transfer in Escherichia coli speciation
-
MEDIGUE, C., T. ROUXEL, P. VIGIER, A. HENAUT, AND A. DANCHIN. 1991. Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol. 222:851-856.
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 851-856
-
-
Medigue, C.1
Rouxel, T.2
Vigier, P.3
Henaut, A.4
Danchin, A.5
-
55
-
-
0030807132
-
Recombination and population structure in Escherichia coli
-
MILKMAN, R. 1997. Recombination and population structure in Escherichia coli. Genetics 146:745-750.
-
(1997)
Genetics
, vol.146
, pp. 745-750
-
-
Milkman, R.1
-
56
-
-
0025133386
-
Molecular evolution of the E. coli chromosome. III. Clonal frames
-
MILKMAN, R.,AND M. M. BRIDGES. 1990. Molecular evolution of the E. coli chromosome. III. Clonal frames. Genetics 126:505-517.
-
(1990)
Genetics
, vol.126
, pp. 505-517
-
-
Milkman, R.1
Bridges, M.M.2
-
57
-
-
0027509705
-
Molecular evolution of the E. coli chromosome. IV. Sequence comparisons
-
MILKMAN, R., AND M. M. BRIDGES. 1993. Molecular evolution of the E. coli chromosome. IV. Sequence comparisons. Genetics 133:455-468.
-
(1993)
Genetics
, vol.133
, pp. 455-468
-
-
Milkman, R.1
Bridges, M.M.2
-
58
-
-
0024100897
-
Molecular evolution of the Escherichia coli chromosome. II. Clonal segments
-
MILKMAN, R., AND A. STOLTZFUS. 1988. Molecular evolution of the Escherichia coli chromosome. II. Clonal segments. Genetics 120:359-366.
-
(1988)
Genetics
, vol.120
, pp. 359-366
-
-
Milkman, R.1
Stoltzfus, A.2
-
59
-
-
0032804381
-
Detecting alien genes in bacterial genomes
-
MRAZEK, J., AND S. KARLIN. 1999. Detecting alien genes in bacterial genomes. Ann. N.Y. Acad. Sci. 870:314-329.
-
(1999)
Ann. N.Y. Acad. Sci.
, vol.870
, pp. 314-329
-
-
Mrazek, J.1
Karlin, S.2
-
60
-
-
0001224667
-
Some genetic aspects of sex
-
MULLER, H. 1932. Some genetic aspects of sex. Am. Nat. 66:118-138.
-
(1932)
Am. Nat.
, vol.66
, pp. 118-138
-
-
Muller, H.1
-
61
-
-
0013596021
-
The guanine and cytosine content of genomic DNA and bacterial evolution
-
MUTO, A., AND S. OSAWA. 1987. The guanine and cytosine content of genomic DNA and bacterial evolution. Proc. Natl. Acad. Sci. USA 84:166-169.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 166-169
-
-
Muto, A.1
Osawa, S.2
-
62
-
-
0027337721
-
The absence of a surface protease, OmpT, determines the intercellular spreading ability of Shigella: The relationship between the ompT and kcpA loci
-
NAKATA, N., T. TOBE, I. FUKUDA, T. SUZUKI, K. KOMATSU, M. YOSHIKAWA, AND C. SASAKAWA. 1993. The absence of a surface protease, OmpT, determines the intercellular spreading ability of Shigella: The relationship between the ompT and kcpA loci. Mol. Microbiol. 9:459-468.
-
(1993)
Mol. Microbiol.
, vol.9
, pp. 459-468
-
-
Nakata, N.1
Tobe, T.2
Fukuda, I.3
Suzuki, T.4
Komatsu, K.5
Yoshikawa, M.6
Sasakawa, C.7
-
63
-
-
0033609333
-
Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thermotoga maritima
-
NELSON, K. E., R. A. CLAYTON, S. R. GILL, M. L. GWINN, R. J. DODSON, D. H. HAFT, E. K. HICKEY, J. D. PETERSON, W. C. NELSON, K. A. KETCHUM, ET AL. 1999. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399:323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
-
65
-
-
0032173633
-
Rates and patterns of chromosome evolution in enteric bacteria
-
OCHMAN, H., AND U. BERGTHORSSON. 1998. Rates and patterns of chromosome evolution in enteric bacteria. Curr. Opin. Microbiol. 1:580-583.
-
(1998)
Curr. Opin. Microbiol.
, vol.1
, pp. 580-583
-
-
Ochman, H.1
Bergthorsson, U.2
-
66
-
-
0000526062
-
Phylogenetics and the amelioration of bacterial genomes
-
(F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger, eds.). American Society for Microbiology, Washington, D.C.
-
OCHMAN, H., AND J. G. LAWRENCE. 1996. Phylogenetics and the amelioration of bacterial genomes. Pages 2627-2637 in Escherichia coli and Salmonella typhimurium: Cellular and molecular biology, 2nd edition (F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger, eds.). American Society for Microbiology, Washington, D.C.
-
(1996)
Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology, 2nd Edition
, pp. 2627-2637
-
-
Ochman, H.1
Lawrence, J.G.2
-
67
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
OCHMAN, H., J. G. LAWRENCE, AND E. GROISMAN. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.3
-
68
-
-
0033616661
-
Genomic evolution during a 10,000-generation experiment with bacteria
-
PAPADOPOULOS, D., D. SCHNEIDER, J. MEIER-EISS, W. ARBER, R. E. LENSKI, AND M. BLOT. 1999. Genomic evolution during a 10,000-generation experiment with bacteria. Proc. Natl. Acad. Sci. USA 96:3807-3812.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3807-3812
-
-
Papadopoulos, D.1
Schneider, D.2
Meier-Eiss, J.3
Arber, W.4
Lenski, R.E.5
Blot, M.6
-
69
-
-
0002751551
-
The recognition concept of species
-
(E. S. Vrba, ed.). Transvaal Museum, Pretoria, South Africa
-
PATERSON, H. E. H. 1985. The recognition concept of species. Pages 21-29 in Species and speciation (E. S. Vrba, ed.). Transvaal Museum, Pretoria, South Africa.
-
(1985)
Species and Speciation
, pp. 21-29
-
-
Paterson, H.E.H.1
-
70
-
-
0032474853
-
Adaptive radiation in a heterogeneous environment
-
RAINEY, P. B., AND M. TRAVISANO. 1998. Adaptive radiation in a heterogeneous environment. Nature 394:69-72.
-
(1998)
Nature
, vol.394
, pp. 69-72
-
-
Rainey, P.B.1
Travisano, M.2
-
71
-
-
0017794180
-
Evolution of the bacterial genome
-
RILEY, M., AND A. ANILONIS. 1978. Evolution of the bacterial genome. Annu. Rev. Microbiol. 32:519-560.
-
(1978)
Annu. Rev. Microbiol.
, vol.32
, pp. 519-560
-
-
Riley, M.1
Anilonis, A.2
-
72
-
-
0016345760
-
Chemical and biological evolution of a nucleotide-binding protein
-
ROSSMAN, M. G., D. MORAS, AND K. W. OLSEN. 1974. Chemical and biological evolution of a nucleotide-binding protein. Nature 250:194-199.
-
(1974)
Nature
, vol.250
, pp. 194-199
-
-
Rossman, M.G.1
Moras, D.2
Olsen, K.W.3
-
73
-
-
0001213179
-
Evolutionary genetics of Salmonella enterica
-
(F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger, eds.). American Society for Microbiology, Washington, D.C.
-
SELANDER, R. K., J. LI, AND K. NELSON. 1996. Evolutionary genetics of Salmonella enterica. Pages 2691-2707 in Escherichia coli and Salmonella typhimurium: Cellular and molecular biology, 2nd edition (F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger, eds.). American Society for Microbiology, Washington, D.C.
-
(1996)
Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology, 2nd Edition
, pp. 2691-2707
-
-
Selander, R.K.1
Li, J.2
Nelson, K.3
-
74
-
-
0029654101
-
DNA sequence evolution: The sounds of silence
-
SHARP, P. M., M. AVEROF, A. T. LLOYD, G. MATASSI, AND J. F. PEDEN. 1995. DNA sequence evolution: The sounds of silence. Philos. Trans. R. Soc. London B Biol. Sci. 349:241-247.
-
(1995)
Philos. Trans. R. Soc. London B Biol. Sci.
, vol.349
, pp. 241-247
-
-
Sharp, P.M.1
Averof, M.2
Lloyd, A.T.3
Matassi, G.4
Peden, J.F.5
-
75
-
-
0023046211
-
Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons
-
SHARP, P. M., AND W.-H. LI. 1986. Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons. Nucleic. Acids Res. 14:7737-7749.
-
(1986)
Nucleic. Acids Res.
, vol.14
, pp. 7737-7749
-
-
Sharp, P.M.1
Li, W.-H.2
-
76
-
-
0023650543
-
The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
-
SHARP, P. M., AND W.-H. LI. 1987a. The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15:1281-1295.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.-H.2
-
77
-
-
0023274170
-
The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
-
SHARP, P. M., AND W.-H. LI. 1987b. The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol. Biol. Evol. 4:222-230.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 222-230
-
-
Sharp, P.M.1
Li, W.-H.2
-
78
-
-
0032900532
-
Genome phylogeny based on gene content
-
SNEL, B., P. BORK, AND M. HUYNEN. 1999. Genome phylogeny based on gene content. Nat. Genet. 21:108-110.
-
(1999)
Nat. Genet.
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.3
-
79
-
-
0032555128
-
Pathogenic adaptation of Escherichia coli by natural variation of the FimH adhesin
-
SOKURENKO, E. V., V. CHESNOKOVA, D. E. DYKHUIZEN, I. OFEK, X. R. WU, K. A. KROGFELT, C. STRUVE, M. A. SCHEMBRI, AND D. L. HASTY. 1998. Pathogenic adaptation of Escherichia coli by natural variation of the FimH adhesin. Proc. Natl. Acad. Sci. USA 95:8922-8926.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 8922-8926
-
-
Sokurenko, E.V.1
Chesnokova, V.2
Dykhuizen, D.E.3
Ofek, I.4
Wu, X.R.5
Krogfelt, K.A.6
Struve, C.7
Schembri, M.A.8
Hasty, D.L.9
-
80
-
-
0032770725
-
On the possibility of constructive neutral evolution
-
STOLTZFUS, A. 1999. On the possibility of constructive neutral evolution. J. Mol. Evol. 49:169-181.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 169-181
-
-
Stoltzfus, A.1
-
81
-
-
3643052747
-
On the genetic basis of variation and heterogeneity in base composition
-
SUEOKA, N. 1962. On the genetic basis of variation and heterogeneity in base composition. Proc. Natl. Acad. Sci. USA 48:582-592.
-
(1962)
Proc. Natl. Acad. Sci. USA
, vol.48
, pp. 582-592
-
-
Sueoka, N.1
-
82
-
-
0023991945
-
Directional mutation pressure and neutral molecular evolution
-
SUEOKA, N. 1988. Directional mutation pressure and neutral molecular evolution. Proc. Natl. Acad. Sci. USA 85:2653-2657.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2653-2657
-
-
Sueoka, N.1
-
83
-
-
0026691099
-
Directional mutation pressure, selective constraints, and genetic equilibria
-
SUEOKA, N. 1992. Directional mutation pressure, selective constraints, and genetic equilibria. J. Mol. Evol. 34:95-114.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 95-114
-
-
Sueoka, N.1
-
84
-
-
0027218267
-
Directional mutation pressure, mutator mutations, and dynamics of molecular evolution
-
SUEOKA, N. 1993. Directional mutation pressure, mutator mutations, and dynamics of molecular evolution. J. Mol. Evol. 37:137-153.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 137-153
-
-
Sueoka, N.1
-
87
-
-
0000314099
-
Ecological species, multispecies, and oaks
-
VAN VALEN, L. 1976. Ecological species, multispecies, and oaks. Taxon 25:223-239.
-
(1976)
Taxon
, vol.25
, pp. 223-239
-
-
Van Valen, L.1
-
88
-
-
0041055370
-
-
Transvaal Museum, Pretoria, South Africa
-
VRBA, E. S. (ed.). 1985. Species and Sspeciation. Transvaal Museum, Pretoria, South Africa.
-
(1985)
Species and Sspeciation
-
-
Vrba, E.S.1
-
89
-
-
0030924545
-
Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in Enterobacteria
-
VULIC, M., F. DIONISIO, F. TADDEI, AND M. RADMAN. 1997. Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in Enterobacteria. Proc. Natl. Acad. Sci. USA 94:9763-9767.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 9763-9767
-
-
Vulic, M.1
Dionisio, F.2
Taddei, F.3
Radman, M.4
-
90
-
-
0033594973
-
Mutation, recombination, and incipient speciation of bacteria in the laboratory
-
VULIC, M., R. E. LENSKI, AND M. RADMAN. 1999. Mutation, recombination, and incipient speciation of bacteria in the laboratory. Proc. Natl. Acad. Sci. USA 96:7348-7351.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7348-7351
-
-
Vulic, M.1
Lenski, R.E.2
Radman, M.3
-
91
-
-
0031693468
-
Bacteriophage biology and bacterial virulence
-
WALDOR, M. K. 1998. Bacteriophage biology and bacterial virulence. Trends Microbiol. 6:295-297.
-
(1998)
Trends Microbiol.
, vol.6
, pp. 295-297
-
-
Waldor, M.K.1
-
92
-
-
0002609744
-
Genetic polymorphisms and recombination in natural populations of Escherichia coli
-
(N. Takahata and A. G. Clark, eds.). Japan Scientific Society Press, Tokyo
-
WHITTAM, T. S., AND S. AKE. 1992. Genetic polymorphisms and recombination in natural populations of Escherichia coli. Pages 223-246 in Mechanisms of molecular evolution (N. Takahata and A. G. Clark, eds.). Japan Scientific Society Press, Tokyo.
-
(1992)
Mechanisms of Molecular Evolution
, pp. 223-246
-
-
Whittam, T.S.1
Ake, S.2
-
93
-
-
84959755121
-
The evolutionary species concept reconsidered
-
WILEY, E. O. 1978. The evolutionary species concept reconsidered. Syst. Zool. 27:17-26.
-
(1978)
Syst. Zool.
, vol.27
, pp. 17-26
-
-
Wiley, E.O.1
-
94
-
-
0024215070
-
A specific, highly active malate dehydrogenase by redesign of a lactate dehydrogenase framework
-
WILKS, H. M., K. W. HART, R. FEENEY, C. R. DUNN, H. MUIRHEAD, W. N. CHIA, D. A. BARSTOW, T. ATKINSON, A. R. CLARKE, AND J. J. HOLBROOK. 1988. A specific, highly active malate dehydrogenase by redesign of a lactate dehydrogenase framework. Science 242:1541-1544.
-
(1988)
Science
, vol.242
, pp. 1541-1544
-
-
Wilks, H.M.1
Hart, K.W.2
Feeney, R.3
Dunn, C.R.4
Muirhead, H.5
Chia, W.N.6
Barstow, D.A.7
Atkinson, T.8
Clarke, A.R.9
Holbrook, J.J.10
-
95
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains archaea, bacteria, and eucarya
-
WOESE, C. R., O. KANDLER, AND M. L. WHEELIS. 1990. Towards a natural system of organisms: Proposal for the domains archaea, bacteria, and eucarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
96
-
-
0032991512
-
Convergent evolution of Trichomonas vaginalis lactate dehydrogenase from malate dehydrogenase
-
WU, G., A. FISER, B. TER KUILE, S. ALI, AND M. MÜLLER. 1999. Convergent evolution of Trichomonas vaginalis lactate dehydrogenase from malate dehydrogenase. Proc. Natl. Acad. Sci. USA 96:6285-6290.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6285-6290
-
-
Wu, G.1
Fiser, A.2
Ter Kuile, B.3
Ali, S.4
Müller, M.5
-
97
-
-
0029038657
-
The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust
-
ZAWADZKI, P., M. S. ROBERTS, AND F. M. COHAN. 1995. The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust. Genetics 140:917-932.
-
(1995)
Genetics
, vol.140
, pp. 917-932
-
-
Zawadzki, P.1
Roberts, M.S.2
Cohan, F.M.3
|