메뉴 건너뛰기




Volumn 16, Issue 3, 1999, Pages 332-346

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes

Author keywords

Complete genome; Genome structure; Insertion sequence; Operon

Indexed keywords

ARTICLE; BACILLUS SUBTILIS; ESCHERICHIA COLI; GENE INSERTION; GENE REARRANGEMENT; GENETIC STABILITY; MICROBIAL GENETICS; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PHYLOGENY; SEQUENCE ANALYSIS; TRANSCRIPTION REGULATION;

EID: 0033058895     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026114     Document Type: Article
Times cited : (171)

References (43)
  • 1
    • 0030608406 scopus 로고    scopus 로고
    • A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map
    • AIBA, H., T. BABA, K. HAYASHI et al. (33 co-authors). 1996. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. DNA Res. 3:363-377.
    • (1996) DNA Res. , vol.3 , pp. 363-377
    • Aiba, H.1    Baba, T.2    Hayashi, K.3
  • 2
    • 0000117110 scopus 로고    scopus 로고
    • Repeated sequences
    • F. C. NEIDHARDT, R. CURTISS III, J. L. INGRAHAM, E. C. C. LIN, K. B. LOW, B. MAGASANIK, W. S. REZNIKOFF, M. RILEY, M. SCHAECHTER, and H. E. UMBARGER, eds. ASM Press, Washington, D.C.
    • BACHELLIER, S., E. GILSON, M. HOFHUNG, and C. W. HILL. 1996. Repeated sequences. Pp. 2012-2040 in F. C. NEIDHARDT, R. CURTISS III, J. L. INGRAHAM, E. C. C. LIN, K. B. LOW, B. MAGASANIK, W. S. REZNIKOFF, M. RILEY, M. SCHAECHTER, and H. E. UMBARGER, eds. Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 2012-2040
    • Bachellier, S.1    Gilson, E.2    Hofhung, M.3    Hill, C.W.4
  • 3
    • 0025357077 scopus 로고
    • Relationship between DNA cycle and growth rate in Synechococcus sp. strain PCC 6301
    • BINDER, B. J., and S. W. CHISHOLM. 1990. Relationship between DNA cycle and growth rate in Synechococcus sp. strain PCC 6301. J. Bacteriol. 172:2313-2319.
    • (1990) J. Bacteriol. , vol.172 , pp. 2313-2319
    • Binder, B.J.1    Chisholm, S.W.2
  • 4
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • BLATTNER, F. R., G. PLUNKETT III, C. A. BLOCH et al. (17 co-authors). 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1474.
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1    Plunkett G. III2    Bloch, C.A.3
  • 5
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • BULT, C. J., O. WHITE, G. J. OLSEN et al. (40 co-authors). 1996. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273:1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3
  • 6
    • 0008910679 scopus 로고
    • Analysis of linkage relationships in Salmonella by transduction techniques
    • DEMEREC, M., and Z. E. DEMEREC. 1956. Analysis of linkage relationships in Salmonella by transduction techniques. Brookhaven Symp. Biol. 8:75-84.
    • (1956) Brookhaven Symp. Biol. , vol.8 , pp. 75-84
    • Demerec, M.1    Demerec, Z.E.2
  • 7
    • 0000239423 scopus 로고    scopus 로고
    • Native insertion sequence elements: Locations, distributions, and sequence relationships
    • F. C. NEIDHARDT, R. CURTISS III, J. L. INGRAHAM, E. C. C. LIN, K. B. LOW, B. MAGASANIK, W. S. REZNIKOFF, M. RILEY, M. SCHAECHTER, and H. E. UMBARGER, eds. ASM Press, Washington, D.C.
    • DEONIER, R. C. 1996. Native insertion sequence elements: locations, distributions, and sequence relationships. Pp. 2000-2011 in F. C. NEIDHARDT, R. CURTISS III, J. L. INGRAHAM, E. C. C. LIN, K. B. LOW, B. MAGASANIK, W. S. REZNIKOFF, M. RILEY, M. SCHAECHTER, and H. E. UMBARGER, eds. Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 2000-2011
    • Deonier, R.C.1
  • 9
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • FLEISCHMANN, R. D., M. D. ADAMS, O. WHITE et al. (40 co-authors). 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269:496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3
  • 10
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • FRASER, C. M., J. D. GOCAYNE, O. WHITE et al. (29 co-authors). 1995. The minimal gene complement of Mycoplasma genitalium. Science 270:397-403.
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1    Gocayne, J.D.2    White, O.3
  • 11
    • 0028290288 scopus 로고
    • Systematic sequencing of the Escherichia coli genome: Analysis of the 2.4-4.1 min (110,917-193,643 bp) region
    • FUJITA, N., H. MORI, T. YURA, and A. ISHIHAMA. 1994. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Nucleic Acids Res. 22:1637-1639.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1637-1639
    • Fujita, N.1    Mori, H.2    Yura, T.3    Ishihama, A.4
  • 12
    • 0031589946 scopus 로고    scopus 로고
    • The yeast genome directory
    • GOFFEAU, A., R. AERT, M. L. AGOSTINI-CARBONE et al. (633 co-authors). 1997. The yeast genome directory. Nature 387(Suppl.):1-105.
    • (1997) Nature , vol.387 , Issue.SUPPL. , pp. 1-105
    • Goffeau, A.1    Aert, R.2    Agostini-Carbone, M.L.3
  • 13
    • 0023664556 scopus 로고
    • Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes
    • HEROLD, M., and K. H. NIERHAUS. 1987. Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes. J. Biol. Chem. 262:8826-8833.
    • (1987) J. Biol. Chem. , vol.262 , pp. 8826-8833
    • Herold, M.1    Nierhaus, K.H.2
  • 15
    • 0030811859 scopus 로고    scopus 로고
    • Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium
    • HIMMELREICH, R., H. PLAGENS, H. HILBERT, B. REINER, and R. HERRMANN. 1997. Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. Nucleic Acids Res. 25:701-712.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 701-712
    • Himmelreich, R.1    Plagens, H.2    Hilbert, H.3    Reiner, B.4    Herrmann, R.5
  • 16
    • 0027478169 scopus 로고
    • Stability and asymmetric replication of the Bacillus subtilis 168 chromosome structure
    • ITAYA, M. 1993. Stability and asymmetric replication of the Bacillus subtilis 168 chromosome structure. J. Bacteriol. 175:741-749.
    • (1993) J. Bacteriol. , vol.175 , pp. 741-749
    • Itaya, M.1
  • 17
    • 0030608403 scopus 로고    scopus 로고
    • A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map
    • ITOH, T., H. AIBA, T. BABA et al. (31 co-authors). 1996. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. DNA Res. 3:379-392.
    • (1996) DNA Res. , vol.3 , pp. 379-392
    • Itoh, T.1    Aiba, H.2    Baba, T.3
  • 18
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • KANEKO, T., S. SATO, H. KOTANI et al. (24 co-authors). 1996. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3:109-136.
    • (1996) DNA Res. , vol.3 , pp. 109-136
    • Kaneko, T.1    Sato, S.2    Kotani, H.3
  • 19
    • 0031589052 scopus 로고    scopus 로고
    • Sequence analysis of the 36-kb region between gntZ and trnY genes of Bacillus subtilis genome
    • KASAHARA, Y., S. NAKAI, and N. OGASAWARA. 1997. Sequence analysis of the 36-kb region between gntZ and trnY genes of Bacillus subtilis genome. DNA Res. 4:155-159.
    • (1997) Dna Res. , vol.4 , pp. 155-159
    • Kasahara, Y.1    Nakai, S.2    Ogasawara, N.3
  • 20
    • 0031458333 scopus 로고    scopus 로고
    • The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
    • KLENK, H.-P., R. A. CLAYTON, J.-F. TOMB et al. (51 co-authors). 1997. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390:364-370.
    • (1997) Nature , vol.390 , pp. 364-370
    • Klenk, H.-P.1    Clayton, R.A.2    Tomb, J.-F.3
  • 21
    • 0030731108 scopus 로고    scopus 로고
    • The complete genome sequence of the gram-positive bacterium Bacillus subtilis
    • KUNST, F., N. OGASAWARA, I. MOSZER et al. (151 co-authors). 1997. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390:249-256.
    • (1997) Nature , vol.390 , pp. 249-256
    • Kunst, F.1    Ogasawara, N.2    Moszer, I.3
  • 23
    • 0004279283 scopus 로고    scopus 로고
    • Oxford University Press, Oxford
    • LEWIN, B. 1997. GENES VI. Oxford University Press, Oxford.
    • (1997) GENES VI
    • Lewin, B.1
  • 24
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • LIPMAN, D. J., and W. R. PEARSON. 1985. Rapid and sensitive protein similarity searches. Science 227:1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 25
    • 0030210340 scopus 로고    scopus 로고
    • Gene order is not conserved in bacterial evolution
    • MUSHEGIAN, A. R., and E. V. KOONIN. 1996. Gene order is not conserved in bacterial evolution. Trends Genet. 12:289-290.
    • (1996) Trends Genet. , vol.12 , pp. 289-290
    • Mushegian, A.R.1    Koonin, E.V.2
  • 26
    • 0028911404 scopus 로고
    • Dynamics of IS-related genetic rearrangements in resting Escherichia coli K-12
    • NAAS, T., M. BLOT, W. M. FITCH, and W. ARBER. 1995. Dynamics of IS-related genetic rearrangements in resting Escherichia coli K-12. Mol. Biol. Evol. 12:198-207.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 198-207
    • Naas, T.1    Blot, M.2    Fitch, W.M.3    Arber, W.4
  • 27
    • 0030606602 scopus 로고    scopus 로고
    • A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map
    • OSHIMA, T., H. AIBA, T. BABA et al. (32 co-authors). 1996. A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Res. 3:137-155.
    • (1996) DNA Res. , vol.3 , pp. 137-155
    • Oshima, T.1    Aiba, H.2    Baba, T.3
  • 28
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • PEARSON, W. R., and D. J. LIPMAN. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 29
    • 0002043965 scopus 로고    scopus 로고
    • Rearrangements of the bacterial chromosome: Formation and applications
    • E. C. NEIDHARDT, R. CURTISS III, J. L. INGRAHAM, E. C. C. LIN, K. B. Low, B. MAGASANIK, W. S. REZNIKOFF, M. RILEY, M. SCHAECHTER, and H. E. UMBARGER, eds. ASM Press, Washington, D.C.
    • ROTH, J. R., N. BENSON, T. GALITSKI, K. HAACK, J. G. LAWRENCE, and L. MIESEL. 1996. Rearrangements of the bacterial chromosome: formation and applications. Pp. 2256-2276 in E. C. NEIDHARDT, R. CURTISS III, J. L. INGRAHAM, E. C. C. LIN, K. B. Low, B. MAGASANIK, W. S. REZNIKOFF, M. RILEY, M. SCHAECHTER, and H. E. UMBARGER, eds. Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 2256-2276
    • Roth, J.R.1    Benson, N.2    Galitski, T.3    Haack, K.4    Lawrence, J.G.5    Miesel, L.6
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 0030732137 scopus 로고    scopus 로고
    • Conserved gene clusters in bacterial genome provide further support for the primacy of RNA
    • SIEFERT, J. L., K. A. MARTIN, F. ABDI, W. R. WIDGER, and G. E. FOX. 1997. Conserved gene clusters in bacterial genome provide further support for the primacy of RNA. J. Mol. Evol. 45:467-472.
    • (1997) J. Mol. Evol. , vol.45 , pp. 467-472
    • Siefert, J.L.1    Martin, K.A.2    Abdi, F.3    Widger, W.R.4    Fox, G.E.5
  • 32
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: Functional analysis and comparative genomics
    • SMITH, D. R., L. A. DOUCETTE-STAMM, C. DELOUGHERY et al. (37 co-authors). 1997. Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics. J. Bacteriol. 179:7135-7155.
    • (1997) J. Bacteriol. , vol.179 , pp. 7135-7155
    • Smith, D.R.1    Doucette-Stamm, L.A.2    Deloughery, C.3
  • 33
    • 0027166660 scopus 로고
    • Operons in C. Elegans: Polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions
    • SPIETH, J., G. BROOKE, S. KUERSTEN, K. LEA, and T. BLUMENΔ THAL. 1993. Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions. Cell 73:521-532.
    • (1993) Cell , vol.73 , pp. 521-532
    • Spieth, J.1    Brooke, G.2    Kuersten, S.3    Lea, K.4    Thal, T.B.5
  • 34
    • 0019799663 scopus 로고
    • The organization and transcription of the galactose gene cluster of Saccharomyces
    • ST. JOHN, T. P., and R. W. DAVIS. 1981. The organization and transcription of the galactose gene cluster of Saccharomyces. J. Mol. Biol. 152:285-315.
    • (1981) J. Mol. Biol. , vol.152 , pp. 285-315
    • St. John, T.P.1    Davis, R.W.2
  • 36
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 0030150662 scopus 로고    scopus 로고
    • A method to invert DNA segments of the Bacillus subtilis 168 genome by recombination between two homologous sequences
    • TODA, T., T. TANAKA, and M. ITAYA. 1996. A method to invert DNA segments of the Bacillus subtilis 168 genome by recombination between two homologous sequences. Biosci. Biotechnol. Biochem. 60:773-778.
    • (1996) Biosci. Biotechnol. Biochem. , vol.60 , pp. 773-778
    • Toda, T.1    Tanaka, T.2    Itaya, M.3
  • 38
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • TOMB, J.-F., O. WHITE, A. R. KERLAVAGE et al. (42 co-authors). 1997. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388:539-547.
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.-F.1    White, O.2    Kerlavage, A.R.3
  • 39
    • 0031035094 scopus 로고    scopus 로고
    • Genome plasticity as a paradigm of eubacterial evolution
    • WATANABE, H., H. MORI, T. ITOH, and T. GOJOBORI. 1997. Genome plasticity as a paradigm of eubacterial evolution. J. Mol. Evol. 44(Suppl. 1):S57-S64.
    • (1997) J. Mol. Evol. , vol.44 , Issue.SUPPL. 1
    • Watanabe, H.1    Mori, H.2    Itoh, T.3    Gojobori, T.4
  • 40
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • WOLFE, K. H., and D. C. SHIELDS. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 41
    • 0031589030 scopus 로고    scopus 로고
    • Construction of a contiguous 874-kb sequence of the Escherichia coli K-12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features
    • YAMAMOTO, Y., H. AIBA, T. BABA et al. (31 co-authors). 1997. Construction of a contiguous 874-kb sequence of the Escherichia coli K-12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features. DNA Res. 4:91-113.
    • (1997) Dna Res. , vol.4 , pp. 91-113
    • Yamamoto, Y.1    Aiba, H.2    Baba, T.3
  • 43
    • 0028033820 scopus 로고
    • Operons as a common form of chromosomal organization in C. elegans
    • ZORIO, D. A. R., N. N. CHENG, T. BLUMENTHAL, and J. SPIETH. 1994. Operons as a common form of chromosomal organization in C. elegans. Nature 372:270-272.
    • (1994) Nature , vol.372 , pp. 270-272
    • Zorio, D.A.R.1    Cheng, N.N.2    Blumenthal, T.3    Spieth, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.