Molecular markers in population genetics of forest trees

Scandinavian Journal of Forest Research

Volumn 16, Issue 3, 2001, Pages 199-220

  Wang, Xiao Ru ^a,b   Szmidt, Alfred E ^c  

^a INSTITUTE OF BOTANY   (China)

^b NATIONAL INSTITUTE FOR WORKING LIFE   (Sweden)

^c SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Allozymes; DNA markers; Evolutionary history; Genetic diversity; Population structure

Indexed keywords

FOREST TREE; GENETIC PARAMETERS; GENETIC VARIANCE; MOLECULAR EVOLUTION; MOLECULAR MARKER; PLANT ADAPTATION; PLANT EVOLUTION; POPULATION GENETICS;

GENES; SAMPLING;

GENE FLOWS;

FORESTRY;

EMBRYOPHYTA;

EID: 0035166893     PISSN: 02827581     EISSN: None     Source Type: Journal    
DOI: 10.1080/02827580118146     Document Type: Review

References (263)

1. RAPD markers of mitochondrial origin exhibit lower population diversity and higher differentiation than RAPDs of nuclear origin in Douglas fir
2. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
3. Molecular genetic analysis of black poplar (Populus nigra L.) along Dutch rivers
4. Mating system and asymmetric hybridization in a mixed stand of European oaks
5. The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny
6. A genetic linkage map of Quercus robus L. (pedunculate oak) based on RAPD SCAR, microsatellite, minisatellite, isozyme and 5S rDNA markers
7. Mating system in natural populations of eastern white pine in Quebec
8. Ribonsomal RNA genes in Quercus spp. (Fagaceae)
9. Genetic variation within and among populations of Arabidopsis thaliana
10. Organelle gene diversity under migration, mutation, and drift: Equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells, and comparison to nuclear genes
11. Inheritance and molecular variations of PCR-SSCP fragments in pedunculate oak (Quercus robur L)
12. Detection of DNA polymorphism in Pinus leucodermis Ant. Using random amplification
13. Genetic divergence and introgressive hybridization between Alnu sinuata and A. Crispa (Betulaceae)
14. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants
15. Complete congruence between morphological and rbcL-based molecular phylogenies in birches and related species (family Betulaceae)
16. Genetic studies in a tropical pine - Pinus kesiya III. The mating system in four populations from northern Thailand
17. Molecular genetics of growth and development in Populus IV. Mapping QTLs with large effects on growth, form, and phenology traits in a forest tree
18. Molecular genetics of growth and development in Populus III. A genetic linkage map of a hybrid poplar composed of RFLP, STS, and RAPD markers
19. Applications of AFLP™ in plant breeding, molecular biology and genetics
20. Enzyme polymorphism in plant population
21. Segregation analysis of random amplified polymorphic DNA (RAPD) markers in Picea abies Karst
22. Genetic variation of RAPD markers in a Picea abies Karst. Population
23. DNA fingerprinting and RFLP analysis
24. Detection and inheritance of RFLPs in Eucalyptus nitens
25. An integrated genetic linkage map for euclaypts using RFLP RAPD and isozyme markers
26. Conservation and genetic diversity of microsatellite loci in the genus Eucalyptus
27. 1progeny of conifers
28. The distribution of the number of heterozygous loci in an individual in natural populations
29. Patterns of genetic variation and characterization of matting system of Pinus merkusii in Thailand
30. Phylogenetics of seed plants - An analysis of nucleotide sequences from the plastid gene rbcL
31. Microsatellite markers for population and conservation genetics of tropical trees
32. Population structure and the mating system of white spruce
33. Chloroplast DNA and the study of plant phylogeny: Present status and future prospects
34. Isoenzyme uniformity in western red cedar seedlings from Oregon and Washington
35. Rapid screening method to detect potential biparental inheritance of plastid DNA and results for over 200 angiosperm species
36. Genetic markers in plant evolutionary ecology
37. Isolation and characterization of microsatellites in trembling aspen (Populus tremuloides)
38. Comparative study of genetic variation and differentiation of two pedunculate oak (Quercus robur) stands using microsatellite and allozyme loci
39. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants
40. Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L) in Europe
41. Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
42. Genetic variation in red pine (Pinus resinosa) revealed by RAPD and RAPD-RFLP analysis
43. Inheritance of mitochondrial DNA in the conifer Larix
44. An RELP linkage map for loblolly pine based on a three-generation outbred pedigree
45. A genetic linkage map for Pinus radiata based on RFLP, RAPD, and microsatellite markers
46. Taxonomic and population differentiation of mitochondrial diversity in Pinus banksiana and Pinus contorta
47. Paternally inherited chloroplast polymorphism in Pinus: Estimation of diversity and population subdivision, and tests of disequilibrium with a maternally inherited mitochondrial polymorphism
48. Size homoplasty in chloroplast microsatellites of wild perennial relatives of soybean (Glycine subgenus Glycine)
49. Characterization of microsatellite markers in eastern white pine
50. Chloroplast microsatellites reveal population genetic diversity in red pine, Pinus resinosa
51. Genetic variation within and among conifer populations: Review and evaluation of methods
52. Patterns of genotypic diversity in clonal plant species
53. Estimating the relative rates of pollen and seed migration among plant populations
54. Clonal diversity in a Rhododendron ferrugineum L. (Ericaceae) population inferred from AFLP markers
55. DNA polymorphism, haplotype structure and balancing selection in the Leavenworthia PgiC locus
56. Characteristics of single- and multi-copy microsatellites from Pinus radiata
57. Genetic diversity in red pine: Evidence for low genic heterozygosity
58. Quantitative trait loci and candidate gene mapping of bud set and bud flush in Populus
59. Mode of reproduction in higher plants
60. Analysis of genetic relationships of central American and Mexican pines using RAPD markers that distinguish species
61. Estimation of outcrossing rate in a breeding population of Eucalyptus urophylla with dominant RAPD and AFLP markers
62. Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants
63. Population genetic structure and conservation of an endangered conifer, Cathaya argyrophylla (Pinaceae)
64. Isozymes and DNA markers in gene conservation of forest trees
65. Structure and organization of the 5S rRNA genes (5S-DNA) in Pinus radiata (Pinaceae)
66. Electrophoretic evidence and plant systematics
67. Ribosomal DNA variation among populations of a Pinus rigida Mill (pitch pine) ecosystem. 1. Distribution of copy numbers
68. Phylogenetic analysis of pines using ribosomal DNA restriction fragment length polymorphisms
69. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: Mapping strategy and RAPD markers
70. The cytological basis of the plastid inheritance in angiosperms
71. Molecular contributions to conservation
72. Relationships between life history characteristics and electrophoretically detectable genetic variation in plants
73. Correlation between species traits and allozyme diversity: Implications for conservation biology
74. Factors influencing levels of genetic diversity in woody plant species
75. Evolution of anthocyanin biosynthesis in maize kernels: The role of regulatory and enzymatic loci
76. Enzyme polymorphism in man
77. A PCR marker for a Populus deltoides allele and its use in studying introgression with native European Populus nigra
78. Nucleic acids III: Sequencing
79. Speciation and domestication in maize and its wild relatives: Evidence from the Globulin-1 gene
80. Organelle genomes in conifers: Structure, evolution, and diversity
81. A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene
82. The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
83. Chloroplast DNA diversity among trees, populations and species in the California closed-cone pines (Pinus radiata, Pinus muricata and Pinus attenuata)
84. Chloroplast DNA transgresses species bounderies and evolves at variable rates in the California closed-cone pines (Pinus radiata, P. muricata, and P. attenuata)
85. A molecular approach to the study of genic heterozygosity in natural populations. I. The number of alleles at different loci in Drosophila pseudoobscura
86. Histochemical demonstration of enzymes separated by zone electrophoresis in starch gels
87. Genetics basis of climatic adaptation in Scots pine by bayesian quantitative trait locus analysis
88. Sequence-tagged sites (STSs) as standard landmarkers in the rice genome
89. Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce
90. Direct evidence for biased gene diversity estimates from dominant RAPD fingerprints
91. Phylogeny and phylogeography of the circumpolar genus Fraxinus (Oleaceae) based on internal transcribed spacer sequences of nuclear ribosomal DNA
92. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories
93. Molecular phylogeny of Dipterocarpaceae in Southeast Asia based on nucleotide sequence of matK, trnL nitron and trnL-trnF intergenic spacer region in chloroplast DNA
94. Do molecular markers reflect patterns of differentiation in adaptive traits of conifers?
95. Length variation in the internal transcribed spacers of ribosomal DNA in Picea abies and related species
96. DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thaliana
97. Inheritance of random amplified polymorphic DNA markers in an interspecific cross in the genus Stylosanthes
98. Genetic analysis of an interspecific hybrid swarm of Populus: Occurrence of unidirectional introgression
99. Mitochondrial DNA variation follows a geographic pattern in Japanese beech species
100. Microsatellite sequences in Pinus sylvestris
101. Phylogenetic measures of biodiversity - A comparison and critique
102. Nuclear and organelle gene diversity in Quercus robur and Q. petraea
103. Phylogenetic analysis of the hard pines (Pinus subgenus Pinus, Pinaceae) from chloroplast DNA restriction site analysis
104. RAPD genome maps of Douglas-fir
105. Repetitive DNA elements as a major component of plant genomes
106. The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(-Cys)(GCA)
107. Evolution of the angiosperm mitochondrial rps3 group II intron in perennial and annual taxa: Substitutions, insertions-deletions and homology to nad5 intron 1
108. Molecular evolution of angiosperm mitochondrial exons and introns
109. A comparison of population differentiation across four classes of gene markers in limber pine (Pinus flexilis James)
110. Direct and indirect estimates of seed versus pollen movement within a population of ponderosa pine
111. Human impacts on genetic diversity in forest ecosystems
112. Gene diversity and genetic structure in a narrow endemic, Torry pine (Pinus torreyana Parry ex Carr.)
113. Recent evolution and divergence among populations of a rare Mexican endemic, Chihuahua spruce, following Holocene climatic warming
114. Sexual and asexual reproduction in natural strands of Populus nigra
115. Properties of AFLP markers in inheritance and genetic diversity studies of Pinus sylvestris L.
116. A molecular approach to the study of genic heterozygosity in natural populations. II. Amounts of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura
117. Genetic diversity in Canadian hardwoods: Implications for conservation
118. Phylogenetics of Pinus (Pinaceae) based on nuclear ribosomal DNA internal transcribed spacer region sequences
119. Comparison of allozyme, RFLP, and RAPD markers for revealing genetic variation within and between trembling aspen and bigtooth aspen
120. Isozyme variation in tropical trees: Patterns of genetic organization
121. Inheritance of RAPD fragments in haploid and diploid tissues of Pinus sylvestris (L.)
122. RNA editing in gymnosperms and its impact on the evolution of the mitochondrial coxI gene
123. Analysis of population genetic structure with RAPD markers
124. Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
125. Mating system analysis in a natural population of Acacia milotica subspecies kraussiana
126. Mating system analysis in a natural population of Acacia nilotica subspecies leiocarapa
127. The use of chloroplast DNA polymorphism in studies of gene flow in plants
128. The spatial distribution of chloroplast DNA and allozyme polymorphisms within a populations of Silene alba (Caryophyllacease)
129. Recent advances of biotechnology and forest trees
130. Quantitative genetics in natural plant populations: A review of the theory
131. Conifers
132. Molecular approaches to populations biology
133. Patterns of genetic diversity in Australian tree species
134. The 5S-RNA genes in Pinus radiata and the speacer region as a probe for relationship between Pinus species
135. PCR-amplified microsatellites as markers in plant genetics
136. Applications of mitochondrial DNA analysis in conservation: A critical review
137. Sampling strategies for using female gametophytes to estimate heterozygosities in conifers
138. Specific synthesis of DNA in vitro via a polymerasecatalyzed chain reaction
139. Genetic comparison of natural and nursery grown seedlings of Pinus sylvestris using allozymes
140. Mating system analysis in a central and northern European population of Picea abies
141. Proteins I: Isozyme electrophoresis
142. Detection and localization of single base changes by denaturing gradient gel electrophoresis
143. Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in loblolly pine
144. Paternal inheritance of chloroplat DNA in Douglas-fir
145. Chloroplast and mitochondrial DNA are paternally inherited in Sequoia sempervirens D. Don Endl.
146. Inheritance of chloroplast and mitochondrial DNA in incense-ceder (Calocedrus decurrens)
147. A partial genetic linkage map of slash pine (Pinus elliottii Engelm. var. elliottii) based on random amplified polymorphic DNAs
148. Fingerprinting and pedigree analysis in Eucalyptus globulus using RAPDs
149. Genetic variation in natural populations: Patterns and theory
150. Molecular phylogeography, intraspecific variation and the conservation of tree species
151. Segregation distortion for AFLP markers in Cryptomeria japonica
152. DNA 'fingerprints' applied to paternity analysis in apples (Malus x domestica)
153. Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome
154. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA
155. Evidence on the origin of cassava: Phylogeography of Manihot esculenta
156. A common language for physical mapping of the human genome
157. Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction
158. PCR-based multiplex DNA fingerprinting techniques for the analysis of conifer genomes
159. Comparative organization of chloroplast genomes
160. PCR-RELP analysis of cpDNA in the genus Abies
161. What molecules can tell us about populations: Choosing and using a molecular marker
162. Natural hybridization between Picea mariana and P. rubens
163. Sequence-tagged-site (STS) markers of arbitrary genes: Development, characterization and analysis of linkage in black spruce
164. Sequence-tagged-site (STS) markers of arbitrary genes: The utility of black spruce-derived STS primers in other conifers
165. Pinus banksiana has at least seven expressed alcohol dehydrogenase genes in two linked groups
166. Sequence-tagged-site (STS) markers of arbitrary genes: The amount and nature of variation revealed in Norway spruce
167. Geographic structure of chloroplast DNA polymorphisms in European oaks
168. Finite island model for organelle and nuclear genes in plants
169. Identification and characterisation of microsatellites in Norway spruce (Picea abies K.)
170. Genomic mapping in Pinus pinaster (maritime pine) using RAPD and protein markers
171. Developing SSCP markers in two Pinus species
172. Chloroplast DNA diversity of Douglas-fir in British Columbia
173. Polymorphic simple sequence regions in chloroplast genomes: Applications to the population genetics of pines
174. Polymorphism revealed by simple sequence repeats
175. Gene-pool variation in Caledonian and European Scots pine (Pinus sylvestris L.) revealed by chloroplast simple-sequence repeats
176. Variation in the nuclear ribosomal DNA internal transcribed spacer (ITS) region of Pinus rzedowskii revealed by PCR-RFLP
177. Identification of wild and cultivated Hordeum species using two-primer RAPD fragments
178. Segregating random amplified polymorphic DNAs (RAPDs) in Betula alleghaniensis
179. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
180. ITS sequences from nuclear rDNA suggest unexpected phylogenetic relationships between Euro-Mediterranean, East Asiatic and North American taxa of Quercus (Fagaceae)
181. Chloroplast and nuclear gene sequences indicate Late Pennsylvanian time for the last common ancestor of extent seed plants
182. Genetic diversity and phylogenetic relationships between birches and alders using rbcL, 18S and ITS rRNA gene sequences
183. Local differentiation among Mediterranean populations of Aleppo pine in their isoenzymes
184. Comparative analysis of population genetic structure in Quercus macrocarpa and Q. gambelii (Fagaceae)
185. Microsatellite markers as a tool for the detection of intra- and interpopulational genetic structure
186. Molecular mechanisms of mitochondrial-genome evolution in higher plants
187. Study of pollination pattern in a Scots pine seed orchard by means of isozyme analysis
188. The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
189. Phylogenetic and biogeographic implications of chloroplast DNA variation in Picea
190. Isozyme uniformity in populations of red pine (Pinus resinosa) in the Abitibiti region, Quebec
191. Multiple origins for Scots pine (Pinus sylvestris L) in Scotland: Evidence from mitochondrial DNA variation
192. Genetic heterogeneity within electrophoretic 'alleles' of xanthine dehydrogenase in Drosophila pseudoobsura
193. Sequence-based genetic markers for genes and gene families: Single-strand conformational polymorphisms for the fatty acid synthesis genes of Cuphea
194. Occurrence and inheritance of microsatellites in Pinus radiata
195. Zone electrophoresis in starch gels: Group variations in the serum proteins of normal individuals
196. Reproductive traits and male fertility in plants-empirical approaches
197. An example of microsatellite length variation in the mitochondrial genome of conifers
198. Phylogenetic relationships of conifers inferred from partial 28S rRNA gene sequences
199. Inheritance of plastids in interspecific hybrids of blue spruce and white spruce
200. Nuclear DNA-based markers for plant evolutionary biology
201. Restriction fragment analysis of pine phylogeny
202. Biochemical and molecular genetic markers in biosystematic studies of forest trees
203. High levels of population differentiation for mitochondrial DNA haplotypes in Pinus radiata, muricata, and attenuata
204. Within-population genetic structure in Quercus robur L. and Quercus petraea (Matt.) Liebl. assessed with isozymes and microsatellites
205. Inheritance of chloroplast and mitochondrial DNA in Picea and composition of hybrids from introgression zones
206. Analysis of sitka spruce interior spruce introgression in British Columbia using cytoplasmic and nuclear DNA probes
207. Genetic variation in isolated populations of stone pine (Pinus cembra L.)
208. Molecular systematics and genetic differentiation of Pinus sylvestris (L.) and P. densiflora (Sieb. et Zucc.)
209. Paternal inheritance of chloroplast DNA in Larix
210. Classifying seedlots of Picea sitchensis and P. glauca in zones of introgression using restriction analysis of chloroplast DNA
211. Contrasting patterns of genetic diversity in two tropical pines: Pinus kesiya (Royle ex Gordon) and P. merkusii (Jungh et De Vriese)
212. Empirical assessment of allozyme and RAPD variation in Pinus sylvestris (L) using haploid tissue analysis
213. Effects of RNA editing on the cox1 evolution and phylogeny reconstruction
214. Universal primers for amplification of three non-coding regions of chloroplast DNA
215. Mitochondrial gene flow
216. Molecular markers in plant breeding
217. Intraspecific variation and phylogeographic patterns of Fagus crenata (Fagaceae) mitochondrial DNA
218. Use of RAPD markers to estimate hybridization in Salix alba and Salix fragilis
219. Differentiation of mitochondrial DNA polymorphisms in populations of five Japanese Abies species
220. Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes
221. Diversity and inheritance of inter-simple sequence repeat polymorphisms in Douglas-fir (Pseudotsuga menziesii) and sugi (Cryptomeria japonica)
222. Sequence-tagged-sites (STSs) of cDNA clones in Cryptomeria japonica and their evaluation as molecular markers in conifers
223. Single tree genetic linkage mapping in conifers using haploid DNA from megagametophytes
224. Development and polymorphism of simple sequence repeat DNA markers for Shorea curtisii and other Dipterocarpaceae species
225. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366924 nucleotides
226. Characterisation and inheritance of polymorphic plastid microsatellites in Abies
227. A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae
228. Genetic mapping in Eucalyptus urophylla and Eucalyptus grandis using RAPD markers
229. Allozyme, chloroplast DNA and RAPD markers for determining genetic relationships between Abies alba and the relic population of Abies nebrodensis
230. AFLP: A new technique for DNA fingerprinting
231. Chloroplast DNA polymorphisms in lodgepole and jack pines and their hybrids
232. Spatial patterns of chloroplast DNA and cone morphology variation within population of a Pinus banksiana-Pinus contorta sympatric region
233. Taxonomic patterns and inheritance of chloroplast DNA variation in a survey of Pinus echinata, Pinus elliotti, Pinus palustris, and Pinus taeda
234. Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii
235. Evolutionary analysis of Pinus densata (Masters), a putative Tertiary hybrid. 2. A study using species-specific chloroplast DNA markers
236. Chloroplast DNA-based phylogeny of Asian Pinus species (Pinaceae)
237. Hybridization and chloroplast DNA variation in a Pinus species complex from Asia
238. Evolutionary analysis of Pinus densata (Masters), a putative Tertiary hybrid. 1. Allozyme variation
239. Genetic evidence for the presence of cytoplasmic DNA in pollen and gametophytes and maternal inheritance of mitochondrial DNA in Pinus
240. Genetic variability in the canker pathogen fungus, Gremmeniella abietina (Lagerb.) Morelet. 2. Fine scale investigation of the population genetic structure
241. The limits of selection during maize domestication
242. Phylogenetic relationships of Eurasian pines (Pinus, Pinaceae) based on chloroplast rbcL, matK, rpl20-rpsl8 spacer and trnV intron sequences
243. The phylogenetic position of the endemic flat-needle pine Pinus krempfii (Pinaceae) from Vietnam, based on PCR-RELP analysis of chloroplast DNA
244. Detecting base pair substitutions by temperature gradient gel electrophoresis
245. Chloroplast DNA typing by PCR-SSCP in the Pinus pumila-P. parviflora var pentaphylla complex (Pinaceae)
246. Good news and bad news about DNA fingerprinting
247. Development and application of molecular marker linkage maps in woody fruit crops
248. Visualization and interpretation of plant isozymes
249. A quantitative measure of introgression between lodgepole and jack pines
250. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers
251. Chloroplast DNA evolves slowly in the palm family (Arecaceae)
252. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
253. Genetic structure of a Pinus sylvestris L. seed-tree stand and naturally regenerated understorey
254. Genomic mapping of Pinus sylvestris (L.) using random amplified polymorphic DNA markers
255. Electrophoretic and morphological differentiation of Picea sitchensis, Picea glauca and their hybrids
256. RAPD variation within and among natural populations of trembling aspen (Populus tremuloides Michx.) from Alberta
257. Estimating population structure in diploids with multilocus dominant DNA markers